>UBAP1_HUMAN (Q9NZ09) Ubiquitin-associated protein 1 (UBAP)|
          Length = 502

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 143 KKFHEIKHCTGLSNNEARCKINSKSCHEGESVLLHACLHRSIVQYPSVNRLKIQL 307
           KK  E +        EA  K+NSKS  EG+S +  +  H +    P +N +   L
Sbjct: 70  KKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASL 124

>KIF1C_RAT (O35787) Kinesin-like protein KIF1C (Kinesin-like protein KIF1D)|
          Length = 1097

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 53  EDHILSKC*LEHAKGQVDQTGRLKVN*LGTKKFHEIKHC 169
           ED ++S+C L H K  V + G++ V+   T +F   +HC
Sbjct: 503 EDPLMSECLLYHIKDGVTRVGQVDVDIKLTGQFIREQHC 541

>IPO11_HUMAN (Q9UI26) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)|
          Length = 975

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = +1

Query: 241 TPCMSPSI----NSSIPVCK*AEDPARSRLTIL-GFCMRASTDQLQTLAMGSCLVIC 396
           +PC++P +     +  P+ + + +  R+   I+ G+   +ST+ LQT A+G C   C
Sbjct: 678 SPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFC 734

>KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C|
          Length = 1100

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 53  EDHILSKC*LEHAKGQVDQTGRLKVN*LGTKKFHEIKHC 169
           ED ++S+C L H K  V + G++ V+   T +F   +HC
Sbjct: 506 EDPLMSECLLYHIKDGVTRVGQVDVDIKLTGQFIREQHC 544

>OXAA_HELPJ (Q9ZJG8) Inner membrane protein oxaA|
          Length = 549

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 41  TIAQEDHILSKC*LEHAKGQVDQTGRLKVN*LGTKKF 151
           TI QE  +LS    EHAK ++D  GR+K   L  KK+
Sbjct: 68  TIPQES-LLSTISFEHAKIEIDSLGRIKQVYLKDKKY 103

>UBAP1_RAT (Q5XIS7) Ubiquitin-associated protein 1 (UBAP)|
          Length = 502

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 182 NNEARCKINSKSCHEGESVLLHACLHRSIVQYPSVNRLKIQL 307
           + EA  K+NSKS  EG+S +  +  H      P +N +   L
Sbjct: 83  SEEAEAKVNSKSGPEGDSKVSFSKTHSPATMPPPINPILASL 124

>UBAP1_MOUSE (Q8BH48) Ubiquitin-associated protein 1 (UBAP)|
           (Ubiquitin-associated protein NAG20)
          Length = 502

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 188 EARCKINSKSCHEGESVLLHACLHRSIVQYPSVNRLKIQL 307
           EA  K+NSKS  EG+S +     H +    P +N +   L
Sbjct: 85  EAEAKVNSKSGPEGDSKVSFPKTHNTATMPPPINPILASL 124

>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C|
          Length = 1103

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 53  EDHILSKC*LEHAKGQVDQTGRLKVN*LGTKKFHEIKHC 169
           ED ++S+C L H K  V + G++ ++   T +F   +HC
Sbjct: 506 EDPLMSECLLYHIKDGVTRVGQVDMDIKLTGQFIREQHC 544


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,834,290
Number of Sequences: 219361
Number of extensions: 994558
Number of successful extensions: 1764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1764
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)