Clone Name | rbart50d04 |
---|---|
Clone Library Name | barley_pub |
>emb|AL772328.13| Mouse DNA sequence from clone RP23-270A19 on chromosome 4, complete sequence Length = 219095 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 agcaaaatggcactctttttt 407 ||||||||||||||||||||| Sbjct: 44662 agcaaaatggcactctttttt 44642
>emb|AL929125.1| Mouse DNA sequence from clone RP23-262O4 on chromosome 2, complete sequence Length = 183595 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 aacccaatgcatgatgtcacc 125 ||||||||||||||||||||| Sbjct: 51370 aacccaatgcatgatgtcacc 51350
>gb|AC154095.1| Homo sapiens chromosome 12 clone fa0961, complete sequence Length = 38257 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 tctctgtgtgattgctcaaaactt 236 ||||||||| |||||||||||||| Sbjct: 16122 tctctgtgttattgctcaaaactt 16099
>ref|NM_017731.4| Homo sapiens oxysterol binding protein-like 7 (OSBPL7), transcript variant 2, mRNA Length = 3320 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 aatgcatgatgtcaccttgttcca 133 |||||| ||||||||||||||||| Sbjct: 2126 aatgcaggatgtcaccttgttcca 2103
>ref|NM_145798.2| Homo sapiens oxysterol binding protein-like 7 (OSBPL7), transcript variant 1, mRNA Length = 3674 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 aatgcatgatgtcaccttgttcca 133 |||||| ||||||||||||||||| Sbjct: 2126 aatgcaggatgtcaccttgttcca 2103
>gb|AC108392.17| Mus musculus chromosome 10, clone RP23-121B23, complete sequence Length = 207763 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 ctaggtacaatgatgcatgaatac 191 |||||||||||| ||||||||||| Sbjct: 57686 ctaggtacaatgttgcatgaatac 57663
>gb|AC165265.2| Mus musculus BAC clone RP23-15M14 from chromosome 13, complete sequence Length = 237830 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 aatgatgcatgaatacgcca 195 |||||||||||||||||||| Sbjct: 165343 aatgatgcatgaatacgcca 165324
>emb|Z77249.2|HS358H7 Human DNA sequence from clone RP3-358H7 on chromosome X Contains a DEAD-box protein pseudogene and the gene for a novel E2F-like protein (LOC51270), complete sequence Length = 148864 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 taacactaggtacaatgatg 182 |||||||||||||||||||| Sbjct: 90062 taacactaggtacaatgatg 90081
>gb|BC065482.1| Homo sapiens oxysterol binding protein-like 7, transcript variant 1, mRNA (cDNA clone MGC:71150 IMAGE:6081784), complete cds Length = 3640 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 aatgcatgatgtcaccttgttcca 133 |||||| ||||||||||||||||| Sbjct: 2098 aatgcaggatgtcaccttgttcca 2075
>gb|AC011611.26| Homo sapiens 12 BAC RP11-290L1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179085 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 tctctgtgtgattgctcaaaactt 236 ||||||||| |||||||||||||| Sbjct: 178613 tctctgtgttattgctcaaaactt 178590
>gb|AF392446.1|AF392446 Homo sapiens oxysterol-binding protein-like protein OSBPL7 (OSBPL7) mRNA, complete cds Length = 3349 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 aatgcatgatgtcaccttgttcca 133 |||||| ||||||||||||||||| Sbjct: 2179 aatgcaggatgtcaccttgttcca 2156
>gb|AF323729.1|AF323729 Homo sapiens OSBP-related protein 7 mRNA, complete cds Length = 2883 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 aatgcatgatgtcaccttgttcca 133 |||||| ||||||||||||||||| Sbjct: 2115 aatgcaggatgtcaccttgttcca 2092
>gb|AC122937.4| Mus musculus BAC clone RP23-24P3 from chromosome 15, complete sequence Length = 196863 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tgtctctgtgtgattgctca 230 |||||||||||||||||||| Sbjct: 57497 tgtctctgtgtgattgctca 57516
>gb|AC159207.2| Mus musculus BAC clone RP23-150H14 from chromosome 13, complete sequence Length = 191824 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 aatgatgcatgaatacgcca 195 |||||||||||||||||||| Sbjct: 157021 aatgatgcatgaatacgcca 157040
>gb|AC126033.4| Mus musculus BAC clone RP24-115A22 from chromosome 14, complete sequence Length = 154626 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 aagaataaaacactgctgtc 214 |||||||||||||||||||| Sbjct: 57112 aagaataaaacactgctgtc 57093
>gb|AY730759.1| Bartonella vinsonii subsp. arupensis BrpC (brpC) gene, partial cds; BrpB (brpB), BrpA (brpA), hypothetical protein, exopolyphosphatase, and FtsJ (ftsJ) genes, complete cds; and GTP-binding protein gene, partial cds Length = 26422 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 aaagaagcaaatagttttgc 295 |||||||||||||||||||| Sbjct: 7125 aaagaagcaaatagttttgc 7144
>gb|AC010134.5| Homo sapiens BAC clone RP11-127K18 from 2, complete sequence Length = 202943 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ctgataagcttaacacagtc 102 |||||||||||||||||||| Sbjct: 159899 ctgataagcttaacacagtc 159918
>gb|AC114290.2| Homo sapiens chromosome 5 clone CTD-3062C19, complete sequence Length = 76144 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gatttgacatactattacaa 21 |||||||||||||||||||| Sbjct: 25010 gatttgacatactattacaa 24991
>gb|AC003665.1|AC003665 Homo sapiens chromosome 17, clone hCIT.211_P_7, complete sequence Length = 145528 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 aatgcatgatgtcaccttgttcca 133 |||||| ||||||||||||||||| Sbjct: 46371 aatgcaggatgtcaccttgttcca 46348
>dbj|AB208886.1| Homo sapiens mRNA for oxysterol-binding protein-like protein 7 variant protein Length = 4497 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 aatgcatgatgtcaccttgttcca 133 |||||| ||||||||||||||||| Sbjct: 2973 aatgcaggatgtcaccttgttcca 2950 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,513,054 Number of Sequences: 3902068 Number of extensions: 3513054 Number of successful extensions: 62205 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62169 Number of HSP's gapped (non-prelim): 36 length of query: 419 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 397 effective length of database: 17,147,199,772 effective search space: 6807438309484 effective search space used: 6807438309484 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)