ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FABI_BRANA (P80030) Enoyl-[acyl-carrier-protein] reductase [NADH... 45 4e-05
2PYRH_CHLTR (O84685) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine ... 29 3.2
3FABI1_RHIME (P58380) Enoyl-[acyl-carrier-protein] reductase [NAD... 28 4.1
4DRL42_ARATH (Q9FKZ1) Probable disease resistance protein At5g66900 28 5.4
5LYAM3_SHEEP (P98109) P-selectin precursor (Granule membrane prot... 28 7.0
6PYRH_CHLMU (P71147) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine ... 28 7.0
7KC1_PLAYO (Q7RBX5) Casein kinase I (EC 2.7.11.1) 28 7.0
8KC1_PLAF7 (Q8IHZ9) Casein kinase I (EC 2.7.11.1) 28 7.0
9Y2081_MYCTU (Q10689) Hypothetical protein Rv2081c/MT2143 28 7.0
10K0056_HUMAN (P42695) Protein KIAA0056 27 9.2
11CYAA_PODAN (Q01513) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophos... 27 9.2

>FABI_BRANA (P80030) Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplast|
           precursor (EC 1.3.1.9) (NADH-dependent enoyl-ACP
           reductase)
          Length = 385

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 19/28 (67%), Positives = 24/28 (85%)
 Frame = -2

Query: 377 AITGSTVYVDNGLNTMGLAVDSPTVSSL 294
           AITG+T+YVDNGLN+MG+A+DSP    L
Sbjct: 356 AITGATIYVDNGLNSMGVALDSPVFKDL 383



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>PYRH_CHLTR (O84685) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate|
           kinase) (UMP kinase)
          Length = 245

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 42  LLRRQSATLNTVSATTTFEIATLQMGQRGGAGLLKRSISTAIPSFFSCPQL 194
           L + QS  +N VSA     +ATL  G      L    +   + S  SCPQL
Sbjct: 62  LSQSQSLQINRVSADQMGMLATLINGMALADALKTEDVPNLLTSTLSCPQL 112



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>FABI1_RHIME (P58380) Enoyl-[acyl-carrier-protein] reductase [NADH] 1 (EC|
           1.3.1.9) (NADH-dependent enoyl-ACP reductase 1)
          Length = 272

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -2

Query: 374 ITGSTVYVDNGLNTMGL-AVDSPTVSSL 294
           +TG   +VD+G +T+G+ AVD+P +S L
Sbjct: 243 VTGEVHHVDSGYHTVGMKAVDAPDISVL 270



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>DRL42_ARATH (Q9FKZ1) Probable disease resistance protein At5g66900|
          Length = 809

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 172 EGMAVEIDLLSSPAPPLWPICNVAISNVVVADTVFSVADWRLNKL 38
           +G++  +DLLS PAP    +C+V        D V    DW L +L
Sbjct: 139 DGLSKRMDLLSVPAPVFRDLCSVP-----KLDKVIVGLDWPLGEL 178



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>LYAM3_SHEEP (P98109) P-selectin precursor (Granule membrane protein 140)|
           (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion
           molecule 3) (LECAM3) (CD62P antigen)
          Length = 769

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 325 LQLTAPRYLRCCDSGRWTYFPDSPRLDCV 239
           L+L    ++ C  SGRWT  P S ++D V
Sbjct: 544 LKLEGSNHVECTASGRWTAPPPSCKVDTV 572



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>PYRH_CHLMU (P71147) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate|
           kinase) (UMP kinase)
          Length = 245

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 42  LLRRQSATLNTVSATTTFEIATLQMGQRGGAGLLKRSISTAIPSFFSCPQL 194
           L + Q+  +N VSA     +ATL  G      L    +   + S  SCPQL
Sbjct: 62  LSQSQNLQINRVSADQMGMLATLINGMALADALKTEDVPNLLTSTLSCPQL 112



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>KC1_PLAYO (Q7RBX5) Casein kinase I (EC 2.7.11.1)|
          Length = 323

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 154 IDLLSSPAPPLWPICNVAISNVVVADTVFSVADWRLNKLCYIYIRNRVY 8
           +DLL      L+ +CN   S      TV   AD  LN++ Y++ +N ++
Sbjct: 82  LDLLGPSLEDLFTLCNRKFS----LKTVLMTADQMLNRIEYVHSKNFIH 126



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>KC1_PLAF7 (Q8IHZ9) Casein kinase I (EC 2.7.11.1)|
          Length = 323

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 154 IDLLSSPAPPLWPICNVAISNVVVADTVFSVADWRLNKLCYIYIRNRVY 8
           +DLL      L+ +CN   S      TV   AD  LN++ Y++ +N ++
Sbjct: 82  LDLLGPSLEDLFTLCNRKFS----LKTVLMTADQMLNRIEYVHSKNFIH 126



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>Y2081_MYCTU (Q10689) Hypothetical protein Rv2081c/MT2143|
          Length = 146

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
 Frame = +3

Query: 51  RQSATLNTVSATTTFEIATL------QMGQRGGAG 137
           R SAT+   + +TT  IATL      Q+ +RGGAG
Sbjct: 56  RVSATIKAAAPSTTAAIATLATAANGQLRERGGAG 90



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>K0056_HUMAN (P42695) Protein KIAA0056|
          Length = 1498

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 276 HLPESQQRRYRGAVNCKTHGVKSIVDVNSRASD 374
           HLP+S + +   AV CK +G +  ++V S A D
Sbjct: 768 HLPKSTRDKVTDAVKCKLNGFQWSLEVISSAVD 800



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>CYAA_PODAN (Q01513) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
            (Adenylyl cyclase)
          Length = 2145

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 277  TYQNHNNEDTVGLSTARPMVLSPLST*TVEP 369
            T+  H  E    L   RP +LSP S  +VEP
Sbjct: 1999 THSKHEKEQAQDLREIRPAILSPGSELSVEP 2029


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,097,633
Number of Sequences: 219361
Number of extensions: 805961
Number of successful extensions: 1923
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1922
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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