ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481639.1| Oryza sativa (japonica cultivar-group), mRNA 90 6e-15
2gb|DQ083199.1| Oryza sativa (indica cultivar-group) clone 5S11F1... 90 6e-15
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
4dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
5dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
6dbj|AK070992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
7emb|AJ003025.1|OSENOYLAC Oryza sativa mRNA for enoyl-ACP reductase 74 4e-10
8gb|BT016571.1| Zea mays clone Contig404 mRNA sequence 66 9e-08
9gb|AY112451.1| Zea mays CL3046_1 mRNA sequence 66 9e-08
10gb|AY106087.1| Zea mays PCO109463 mRNA sequence 64 3e-07
11gb|AC105749.2| Homo sapiens chromosome 3 clone RP11-640L9, compl... 46 0.082
12gb|AC097360.2| Homo sapiens chromosome 3 clone RP11-344C13, comp... 46 0.082
13gb|AC025056.5|AC025056 Homo sapiens chromosome 8, clone RP11-400... 44 0.32
14emb|AL118557.5|CNS01DRT Human chromosome 14 DNA sequence BAC R-1... 44 0.32
15dbj|AB009777.1| Homo sapiens gene for osteonidogen, promoter region 44 0.32
16gb|AC157562.8| Mus musculus chromosome 1, clone RP24-304A3, comp... 42 1.3
17emb|AL450345.6| Human DNA sequence from clone RP11-300M24 on chr... 42 1.3
18emb|AL158214.33| Human DNA sequence from clone RP11-543E8 on chr... 42 1.3
19gb|AC079320.9| Homo sapiens chromosome 5, clone RP11-729C24, com... 42 1.3
20gb|AC116366.2| Homo sapiens chromosome 5 clone RP11-89G4, comple... 42 1.3
21gb|AC156804.2| Pan troglodytes BAC clone CH251-371A18 from chrom... 42 1.3
22gb|AC005386.1|AC005386 citb_57_l_21, complete sequence 42 1.3
23gb|L81766.1|HSL81766 Homo sapiens (subclone 9_d11 from P1 H18) D... 42 1.3
24gb|L05072.1|HUMIFNRF1A Homo sapiens interferon regulatory factor... 42 1.3
25ref|NM_187851.1| Oryza sativa (japonica cultivar-group), Ozsa829... 40 5.0
26gb|DQ121061.1| Hucho taimen clone ZA-56 microsatellite sequence 40 5.0
27emb|AL031744.8|PFMAL1P1 Plasmodium falciparum DNA from MAL1P1, c... 40 5.0
28gb|AC087772.5|AC087772 Genomic Sequence for Mus musculus, clone ... 40 5.0
29dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
30gb|AC011754.8| Homo sapiens BAC clone RP11-546P22 from 2, comple... 40 5.0
31gb|AC020968.3| Mus musculus chromosome 18 clone RP23-193O23, com... 40 5.0
32dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
33emb|BX649333.9| Zebrafish DNA sequence from clone DKEY-200F3 in ... 40 5.0
34ref|XM_308264.2| Anopheles gambiae str. PEST ENSANGP00000010835 ... 40 5.0
35emb|AJ330610.1|HSA330610 Homo sapiens genomic sequence surroundi... 40 5.0
36emb|BX000462.10| Zebrafish DNA sequence from clone DKEY-114F6 in... 40 5.0
37dbj|AP004250.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 5.0 
>ref|XM_481639.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1647

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                        
Query: 310  gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 369
            ||||||||||||||||| ||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 1311 gggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgagcca 1252

                 
Query: 370  gtgat 374
            |||||
Sbjct: 1251 gtgat 1247



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 214  tactaactaactaagctctttattcaa 240
            ||||| |||||||||||||||||||||
Sbjct: 1404 tactacctaactaagctctttattcaa 1378
to top
>gb|DQ083199.1| Oryza sativa (indica cultivar-group) clone 5S11F12 mRNA sequence
          Length = 443

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                       
Query: 310 gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 369
           ||||||||||||||||| ||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 270 gggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgagcca 211

                
Query: 370 gtgat 374
           |||||
Sbjct: 210 gtgat 206



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 214 tactaactaactaagctctttattcaa 240
           ||||| |||||||||||||||||||||
Sbjct: 363 tactacctaactaagctctttattcaa 337
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                            
Query: 310      gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 369
                ||||||||||||||||| ||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 14411413 gggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgagcca 14411354

                     
Query: 370      gtgat 374
                |||||
Sbjct: 14411353 gtgat 14411349



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 214      tactaactaactaagctctttattcaa 240
                ||||| |||||||||||||||||||||
Sbjct: 14411506 tactacctaactaagctctttattcaa 14411480
to top
>dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0049I01
          Length = 140261

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                        
Query: 310  gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 369
            ||||||||||||||||| ||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 6281 gggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgagcca 6222

                 
Query: 370  gtgat 374
            |||||
Sbjct: 6221 gtgat 6217



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 214  tactaactaactaagctctttattcaa 240
            ||||| |||||||||||||||||||||
Sbjct: 6374 tactacctaactaagctctttattcaa 6348
to top
>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0670E08
          Length = 133106

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                         
Query: 310   gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 369
             ||||||||||||||||| ||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 55696 gggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgagcca 55637

                  
Query: 370   gtgat 374
             |||||
Sbjct: 55636 gtgat 55632



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 214   tactaactaactaagctctttattcaa 240
             ||||| |||||||||||||||||||||
Sbjct: 55789 tactacctaactaagctctttattcaa 55763
to top
>dbj|AK070992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077K10, full
            insert sequence
          Length = 1647

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                        
Query: 310  gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 369
            ||||||||||||||||| ||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 1311 gggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgagcca 1252

                 
Query: 370  gtgat 374
            |||||
Sbjct: 1251 gtgat 1247



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 214  tactaactaactaagctctttattcaa 240
            ||||| |||||||||||||||||||||
Sbjct: 1404 tactacctaactaagctctttattcaa 1378
to top
>emb|AJ003025.1|OSENOYLAC Oryza sativa mRNA for enoyl-ACP reductase
          Length = 1520

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                        
Query: 310  gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 369
            ||||||||||||||||| ||||| || || ||||||||||  ||||| ||||||||||||
Sbjct: 1148 gggctgtcaactgcaagccccattgtattgagtccattgtgaacgtacacagtcgagcca 1089

                 
Query: 370  gtgat 374
            |||||
Sbjct: 1088 gtgat 1084
to top
>gb|BT016571.1| Zea mays clone Contig404 mRNA sequence
          Length = 1517

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                        
Query: 310  gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 369
            |||||||||| |||||| ||||| || || || |||||||| || |||||||||||||| 
Sbjct: 1178 gggctgtcaattgcaagccccattgtattgagcccattgtcaacataaacagtcgagccg 1119

                     
Query: 370  gtgatggca 378
            |||||||||
Sbjct: 1118 gtgatggca 1110
to top
>gb|AY112451.1| Zea mays CL3046_1 mRNA sequence
          Length = 1482

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                        
Query: 310  gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 369
            |||||||||| |||||| ||||| || || || |||||||| || |||||||||||||| 
Sbjct: 1174 gggctgtcaattgcaagccccattgtattgagcccattgtcaacataaacagtcgagccg 1115

                     
Query: 370  gtgatggca 378
            |||||||||
Sbjct: 1114 gtgatggca 1106
to top
>gb|AY106087.1| Zea mays PCO109463 mRNA sequence
          Length = 1496

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 307  gtggggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgag 366
            ||||||||||||| |||||| ||||| ||||| || |||||||| ||||||| ||| || 
Sbjct: 1223 gtggggctgtcaagtgcaagtcccattgtgttgagcccattgtcaacgtaaatagttgaa 1164

                    
Query: 367  ccagtgat 374
            ||||||||
Sbjct: 1163 ccagtgat 1156
to top
>gb|AC105749.2| Homo sapiens chromosome 3 clone RP11-640L9, complete sequence
          Length = 200450

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 160    cagccatcccctcttttttctcctgcc 186
              ||||| |||||||||||||||||||||
Sbjct: 178821 cagccttcccctcttttttctcctgcc 178847
to top
>gb|AC097360.2| Homo sapiens chromosome 3 clone RP11-344C13, complete sequence
          Length = 166349

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 160    cagccatcccctcttttttctcctgcc 186
              ||||| |||||||||||||||||||||
Sbjct: 121280 cagccttcccctcttttttctcctgcc 121306
to top
>gb|AC025056.5|AC025056 Homo sapiens chromosome 8, clone RP11-400G5, complete sequence
          Length = 166222

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 229   ctctttattcaacacaatcaag 250
             ||||||||||||||||||||||
Sbjct: 88371 ctctttattcaacacaatcaag 88350
to top
>emb|AL118557.5|CNS01DRT Human chromosome 14 DNA sequence BAC R-1033H12 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 214175

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 157   caacagccatcccctctttttt 178
             ||||||||||||||||||||||
Sbjct: 81157 caacagccatcccctctttttt 81178
to top
>dbj|AB009777.1| Homo sapiens gene for osteonidogen, promoter region
          Length = 5332

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 157 caacagccatcccctctttttt 178
           ||||||||||||||||||||||
Sbjct: 510 caacagccatcccctctttttt 489
to top
>gb|AC157562.8| Mus musculus chromosome 1, clone RP24-304A3, complete sequence
          Length = 120189

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    acagtatcagcaacaacaaca 92
             |||||||||||||||||||||
Sbjct: 53372 acagtatcagcaacaacaaca 53352
to top
>emb|AL450345.6| Human DNA sequence from clone RP11-300M24 on chromosome 6 Contains a
             novel gene, complete sequence
          Length = 183342

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    acagtatcagcaacaacaaca 92
             |||||||||||||||||||||
Sbjct: 48741 acagtatcagcaacaacaaca 48721
to top
>emb|AL158214.33| Human DNA sequence from clone RP11-543E8 on chromosome 1q42.2-43
             Contains a novel gene, a ribosomal protein S24 (RPS24)
             pseudogene, the COG2 gene for component of oligomeric
             golgi complex 2, the 3' end of the AGT gene for
             angiotensinogen (serine (or cysteine) proteinase
             inhibitor,clade A (alpha-1 antiproteinase, antitrypsin),
             member 8) and a CpG island, complete sequence
          Length = 181175

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   ttttctcctgccctcagctct 195
             |||||||||||||||||||||
Sbjct: 70400 ttttctcctgccctcagctct 70380
to top
>gb|AC079320.9| Homo sapiens chromosome 5, clone RP11-729C24, complete sequence
          Length = 160042

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 169   cctcttttttctcctgccctc 189
             |||||||||||||||||||||
Sbjct: 33748 cctcttttttctcctgccctc 33728
to top
>gb|AC116366.2| Homo sapiens chromosome 5 clone RP11-89G4, complete sequence
          Length = 169385

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 169   cctcttttttctcctgccctc 189
             |||||||||||||||||||||
Sbjct: 98711 cctcttttttctcctgccctc 98691
to top
>gb|AC156804.2| Pan troglodytes BAC clone CH251-371A18 from chromosome unknown,
             complete sequence
          Length = 232130

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 169   cctcttttttctcctgccctc 189
             |||||||||||||||||||||
Sbjct: 95165 cctcttttttctcctgccctc 95145
to top
>gb|AC005386.1|AC005386 citb_57_l_21, complete sequence
          Length = 196361

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 175    ttttctcctgccctcagctct 195
              |||||||||||||||||||||
Sbjct: 163508 ttttctcctgccctcagctct 163488
to top
>gb|L81766.1|HSL81766 Homo sapiens (subclone 9_d11 from P1 H18) DNA sequence, complete
            sequence
          Length = 4220

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 169  cctcttttttctcctgccctc 189
            |||||||||||||||||||||
Sbjct: 3882 cctcttttttctcctgccctc 3902
to top
>gb|L05072.1|HUMIFNRF1A Homo sapiens interferon regulatory factor 1 gene, complete cds
          Length = 7721

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 169  cctcttttttctcctgccctc 189
            |||||||||||||||||||||
Sbjct: 3606 cctcttttttctcctgccctc 3626
to top
>ref|NM_187851.1| Oryza sativa (japonica cultivar-group), Ozsa8295 predicted mRNA
          Length = 2382

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 75   gtatcagcaacaacaacatt 94
            ||||||||||||||||||||
Sbjct: 1748 gtatcagcaacaacaacatt 1729
to top
>gb|DQ121061.1| Hucho taimen clone ZA-56 microsatellite sequence
          Length = 726

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  cagtatcagcaacaacaaca 92
           ||||||||||||||||||||
Sbjct: 498 cagtatcagcaacaacaaca 517
to top
>emb|AL031744.8|PFMAL1P1 Plasmodium falciparum DNA from MAL1P1, complete sequence
          Length = 124330

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   ccatcccctcttttttctcc 182
             ||||||||||||||||||||
Sbjct: 13448 ccatcccctcttttttctcc 13429
to top
>gb|AC087772.5|AC087772 Genomic Sequence for Mus musculus, clone RP23-326L17, complete sequence
          Length = 218905

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    tgggccaaagaggtggtgct 134
              ||||||||||||||||||||
Sbjct: 108792 tgggccaaagaggtggtgct 108811
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 75      gtatcagcaacaacaacatt 94
               ||||||||||||||||||||
Sbjct: 8268088 gtatcagcaacaacaacatt 8268069
to top
>gb|AC011754.8| Homo sapiens BAC clone RP11-546P22 from 2, complete sequence
          Length = 141704

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 20     tctgatgtatatataacacagttt 43
              |||||| |||||||||||||||||
Sbjct: 130824 tctgatatatatataacacagttt 130847
to top
>gb|AC020968.3| Mus musculus chromosome 18 clone RP23-193O23, complete sequence
          Length = 199704

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   tgggccaaagaggtggtgct 134
             ||||||||||||||||||||
Sbjct: 54397 tgggccaaagaggtggtgct 54416
to top
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0434D08
          Length = 161266

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    gtatcagcaacaacaacatt 94
             ||||||||||||||||||||
Sbjct: 62019 gtatcagcaacaacaacatt 62000
to top
>emb|BX649333.9| Zebrafish DNA sequence from clone DKEY-200F3 in linkage group 4,
             complete sequence
          Length = 273859

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   ccatcccctcttttttctcc 182
             ||||||||||||||||||||
Sbjct: 48803 ccatcccctcttttttctcc 48822
to top
>ref|XM_308264.2| Anopheles gambiae str. PEST ENSANGP00000010835
           (ENSANGG00000008346), partial mRNA
          Length = 381

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  atcagcaacaacaacattcg 96
           ||||||||||||||||||||
Sbjct: 269 atcagcaacaacaacattcg 288
to top
>emb|AJ330610.1|HSA330610 Homo sapiens genomic sequence surrounding NotI site, clone
           HSJ4P-E15RS
          Length = 676

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 110 acaaatgggccaaagaggtggtgc 133
           |||||||||||||||| |||||||
Sbjct: 524 acaaatgggccaaagaagtggtgc 501
to top
>emb|BX000462.10| Zebrafish DNA sequence from clone DKEY-114F6 in linkage group 1, complete
              sequence
          Length = 167671

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    ccatcccctcttttttctcc 182
              ||||||||||||||||||||
Sbjct: 117201 ccatcccctcttttttctcc 117182
to top
>dbj|AP004250.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47K21, TM0260,
             complete sequence
          Length = 79947

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    cagtatcagcaacaacaaca 92
             ||||||||||||||||||||
Sbjct: 74546 cagtatcagcaacaacaaca 74527


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,332,328
Number of Sequences: 3902068
Number of extensions: 4332328
Number of successful extensions: 87747
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87636
Number of HSP's gapped (non-prelim): 111
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top