ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart50d01 |
|---|---|
| Clone Library Name | barley_pub |
>TNR8_RAT (P97525) Tumor necrosis factor receptor superfamily member 8| precursor (CD30L receptor) (Lymphocyte activation antigen CD30) Length = 493 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = +1 Query: 127 QRSQNLDHPNLDRYRNSMDTPYIQTEIQTEQNLYQTPPQFDDSISSNRFTPRGGLQSREP 306 QRS ++ + + + P ++T +T P DDSI+ N F PR + EP Sbjct: 345 QRSGSVTDSSAGHTLSPLSPPAVETGASVGTACLETLPLLDDSITGNSFAPR---EPPEP 401 Query: 307 R 309 R Sbjct: 402 R 402
>HXK1_BOVIN (P27595) Hexokinase-1 (EC 2.7.1.1) (Hexokinase type I) (HK I)| (Brain form hexokinase) Length = 918 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/30 (36%), Positives = 22/30 (73%) Frame = +1 Query: 157 LDRYRNSMDTPYIQTEIQTEQNLYQTPPQF 246 L+R R++ TP ++T ++ + +LY+T PQ+ Sbjct: 394 LNRLRDNKSTPRLRTTVRVDGSLYKTHPQY 423
>HXK1_HUMAN (P19367) Hexokinase-1 (EC 2.7.1.1) (Hexokinase type I) (HK I)| (Brain form hexokinase) Length = 917 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = +1 Query: 157 LDRYRNSMDTPYIQTEIQTEQNLYQTPPQF 246 L+R R++ TP ++T + + +LY+T PQ+ Sbjct: 394 LNRLRDNKGTPRLRTTVGVDGSLYKTHPQY 423
>DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)| Length = 877 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Frame = +1 Query: 106 VHTVLSNQRSQNLDHPNLDRYRNSMDTPYIQTEI--QTEQNLYQTPPQFDDSISSNRFT 276 +H L+ +R L HP+ + + TPY+Q + Q ++ T P D + T Sbjct: 243 IHQALAAERKFFLSHPSYRHMADRLGTPYLQRVLNQQLTNHIRDTLPGLRDKLQKQMLT 301
>NO70_SOYBN (Q02920) Early nodulin 70| Length = 485 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = +1 Query: 94 PPTIVHTVLSNQRSQNLDHPNLDRYRNSMDTPYIQTEIQTEQNLY 228 PP+++ V+ N + L HPN + + + P+ + QNL+ Sbjct: 12 PPSMLRQVVDNVKETLLPHPNPNTFSYLRNQPFSKRAFALLQNLF 56
>TNNI2_RAT (P27768) Troponin I, fast skeletal muscle (Troponin I, fast-twitch| isoform) Length = 181 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 3/30 (10%) Frame = +2 Query: 209 KRNRTST---KHHRNLMIALAATDLRREEA 289 KRNR T +H +++M+ +AAT+L +EE+ Sbjct: 5 KRNRAITARRQHLKSVMLQIAATELEKEES 34
>TNNI2_MOUSE (P13412) Troponin I, fast skeletal muscle (Troponin I, fast-twitch| isoform) Length = 181 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 3/30 (10%) Frame = +2 Query: 209 KRNRTST---KHHRNLMIALAATDLRREEA 289 KRNR T +H +++M+ +AAT+L +EE+ Sbjct: 5 KRNRAITARRQHLKSVMLQIAATELEKEES 34
>TNNI2_HUMAN (P48788) Troponin I, fast skeletal muscle (Troponin I, fast-twitch| isoform) Length = 181 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 3/30 (10%) Frame = +2 Query: 209 KRNRTST---KHHRNLMIALAATDLRREEA 289 KRNR T +H +++M+ +AAT+L +EE+ Sbjct: 5 KRNRAITARRQHLKSVMLQIAATELEKEES 34
>CI079_HUMAN (Q6ZUB1) Protein C9orf79| Length = 1445 Score = 27.7 bits (60), Expect = 7.1 Identities = 20/67 (29%), Positives = 27/67 (40%) Frame = +1 Query: 79 NEEMIPPTIVHTVLSNQRSQNLDHPNLDRYRNSMDTPYIQTEIQTEQNLYQTPPQFDDSI 258 N E + T+ V N SQN LD+ S+ + E++ L Q PPQ Sbjct: 447 NSESLATTV--WVSRNPSSQNAHSVPLDKASTSLPG---EPEVEASSQLSQAPPQPHHMA 501 Query: 259 SSNRFTP 279 FTP Sbjct: 502 QPQHFTP 508
>BIR1_SCHPO (O14064) Protein bir1 (Chromosome segregation protein cut17)| Length = 997 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Frame = +1 Query: 94 PPTIVHTVLSNQRSQNLDHPNLDRYRNSMDTP---YIQTEIQTEQNLYQTPPQFDDSISS 264 P T VHT +S+ D N M TP I+++I+ E ++ + S+SS Sbjct: 363 PATSVHTTVSDITGHQSVTDESDEQNNCMSTPPKIEIESKIEEEISVVSKSKEISSSVSS 422
>CDC7_SCHPO (P41892) Cell division control protein 7 (EC 2.7.11.1)| Length = 1062 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 136 QNLDHPNLDRYRNSMDT 186 +NLDHPN+ +YR S T Sbjct: 61 KNLDHPNIVKYRGSYQT 77
>TNNI2_RABIT (P02643) Troponin I, fast skeletal muscle (Troponin I, fast-twitch| isoform) Length = 181 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 3/29 (10%) Frame = +2 Query: 209 KRNRTST---KHHRNLMIALAATDLRREE 286 KRNR T +H +++M+ +AAT+L +EE Sbjct: 5 KRNRAITARRQHLKSVMLQIAATELEKEE 33
>FTSH_CHLVU (P56369) Cell division protein ftsH homolog| Length = 1720 Score = 27.3 bits (59), Expect = 9.3 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%) Frame = +1 Query: 115 VLSNQRSQNLDHPNLDR-YRNSMDTPYIQ--------TEIQTEQNLYQTPPQFDDSISSN 267 V+ NQ + LD ++ Y+ + P I ++ +TE N++ T QFD S + Sbjct: 1633 VILNQNREILDRIVVELLYQEILKKPQIDDLMKELENSKPKTEPNVFSTELQFDASKKAP 1692 Query: 268 RFTPRGGLQSREPRP 312 G QSR+P P Sbjct: 1693 FVELSWGFQSRKPIP 1707 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,444,633 Number of Sequences: 219361 Number of extensions: 983676 Number of successful extensions: 2417 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2298 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2397 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
