Clone Name | rbart50c11 |
---|---|
Clone Library Name | barley_pub |
>gb|BC101863.1| Rattus norvegicus similar to a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 10, mRNA (cDNA clone MGC:124747 IMAGE:7939411), complete cds Length = 1932 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 719 atctctcactccacaggctgtgtc 696
>gb|AF163762.1| Homo sapiens zinc metalloendopeptidase (ADAMTS10) mRNA, partial cds Length = 3400 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 516 atctctcactccacaggctgtgtc 493
>gb|BC062489.1| Xenopus tropicalis kelch domain containing 4, mRNA (cDNA clone IMAGE:5379822), partial cds Length = 1134 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 atggatctctcactccacac 74 |||||||||||||||||||| Sbjct: 273 atggatctctcactccacac 292
>ref|NM_001034930.1| Rattus norvegicus similar to a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 10 (LOC314655), mRNA Length = 1932 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 719 atctctcactccacaggctgtgtc 696
>ref|XM_590783.2| PREDICTED: Bos taurus similar to ADAM metallopeptidase with thrombospondin type 1 motif, 10 preproprotein, transcript variant 1 (LOC513140), mRNA Length = 3601 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 688 atctctcactccacaggctgtgtc 665
>ref|XM_883027.1| PREDICTED: Bos taurus similar to ADAM metallopeptidase with thrombospondin type 1 motif, 10 preproprotein, transcript variant 3 (LOC513140), mRNA Length = 3655 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 688 atctctcactccacaggctgtgtc 665
>ref|NM_030957.2| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 10 (ADAMTS10), mRNA Length = 4237 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 868 atctctcactccacaggctgtgtc 845
>gb|BC082773.1| Mus musculus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10, mRNA (cDNA clone IMAGE:6511555), containing frame-shift errors Length = 4140 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 748 atctctcactccacaggctgtgtc 725
>gb|BC056427.1| Mus musculus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10, mRNA (cDNA clone IMAGE:5698210), containing frame-shift errors Length = 4027 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 726 atctctcactccacaggctgtgtc 703
>ref|XM_993386.1| PREDICTED: Mus musculus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10 (Adamts10), mRNA Length = 3766 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 736 atctctcactccacaggctgtgtc 713
>ref|XM_905505.1| PREDICTED: Mus musculus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10 (Adamts10), mRNA Length = 4039 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 736 atctctcactccacaggctgtgtc 713
>ref|XM_989486.1| PREDICTED: Mus musculus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10 (Adamts10), mRNA Length = 4039 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 736 atctctcactccacaggctgtgtc 713
>gb|BC100558.1| Mus musculus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10, mRNA (cDNA clone IMAGE:5143430), complete cds Length = 909 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 510 atctctcactccacaggctgtgtc 487
>ref|NM_172619.2| Mus musculus a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10 (Adamts10), mRNA Length = 3731 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 728 atctctcactccacaggctgtgtc 705
>dbj|AK042525.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730001E07 product:ADAMTS-10 PRECURSOR (EC 3.4.24.-) (A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 10) (ADAM-TS 10) (ADAM-TS10) (FRAGMENT) homolog [Homo sapiens], full insert sequence Length = 3983 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 744 atctctcactccacaggctgtgtc 721
>dbj|AK034565.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430006O18 product:a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 10, full insert sequence Length = 1799 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 731 atctctcactccacaggctgtgtc 708
>dbj|AK076334.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732442E24 product:ADAMTS-10 PRECURSOR (EC 3.4.24.-) (A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 10) (ADAM-TS 10) (ADAM-TS10) (FRAGMENT) homolog [Homo sapiens], full insert sequence Length = 3328 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 730 atctctcactccacaggctgtgtc 707
>emb|AL591401.5| Zebrafish DNA sequence from clone BUSM1-175P12 in linkage group 7, complete sequence Length = 84068 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ttgcaacaaagcatggatct 62 |||||||||||||||||||| Sbjct: 48653 ttgcaacaaagcatggatct 48634
>dbj|AB209515.1| Homo sapiens mRNA for a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 10 preproprotein variant protein Length = 3423 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atctctcactccacacgctgtgtc 82 ||||||||||||||| |||||||| Sbjct: 731 atctctcactccacaggctgtgtc 708
>ref|NM_127451.1| Arabidopsis thaliana unknown protein AT2G18940 mRNA, complete cds Length = 2666 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 34 accacaaacttgcaacaaagcat 56 |||| |||||||||||||||||| Sbjct: 1035 accaaaaacttgcaacaaagcat 1013
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 54 catggatctctcactccacacgc 76 |||||| |||||||||||||||| Sbjct: 131716 catggagctctcactccacacgc 131694
>ref|XM_582759.2| PREDICTED: Bos taurus similar to aldehyde dehydrogenase 16 family, member A1 (LOC506329), mRNA Length = 2942 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 tctctcactccacacgctg 78 ||||||||||||||||||| Sbjct: 1370 tctctcactccacacgctg 1352
>ref|XM_849227.1| PREDICTED: Canis familiaris similar to a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 10 preproprotein, transcript variant 1 (LOC611267), mRNA Length = 3406 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 60 tctctcactccacacgctgtgtc 82 |||||||||||||| |||||||| Sbjct: 687 tctctcactccacaggctgtgtc 665
>gb|BT010749.1| Arabidopsis thaliana At2g18940/F19F24.14 gene, complete cds Length = 2469 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 34 accacaaacttgcaacaaagcat 56 |||| |||||||||||||||||| Sbjct: 981 accaaaaacttgcaacaaagcat 959
>gb|AC161506.4| Mus musculus chromosome 3, clone RP24-210J6, complete sequence Length = 175241 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 acttgcaacaaagcatgga 59 ||||||||||||||||||| Sbjct: 146572 acttgcaacaaagcatgga 146554
>emb|AL591382.3| Zebrafish DNA sequence from clone BUSM1-105L16 in linkage group 7 Contains the nitr2d_1 gene for novel immune-type receptor 2d, allele 1, the nitr1o_3 gene for novel immune-type receptor 1o, allele 3, the nitr1m_2 gene for novel immune-type receptor 1m, allele 2, the nitr1l_2 gene for novel immune-type receptor 1l, allele 2, a novel immune-type receptor 1 pseudogene, the nitr5_4 gene for novel immune-type receptor 5, allele 4, the nitr4a_2 gene for novel immune-type receptor 4a, allele 2, the nitr1i_2 gene for novel immune-type receptor 1i, allele 2, the nitr1j_1 gene for novel immune-type receptor 1j, allele 1, the nitr1g_1 gene for novel immune-type receptor 1g, allele 1, a novel immune-type receptor 4b pseudogene, a novel gene, the nitr1k_3 gene for novel immune-type receptor 1k, allele 3 and a CpG island, complete sequence Length = 98934 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 ttgcaacaaagcatggatc 61 ||||||||||||||||||| Sbjct: 72779 ttgcaacaaagcatggatc 72797
>emb|AL591497.2| Zebrafish DNA sequence from clone BUSM1-173M20 in linkage group 7 Contains the nitr1.14, nitr1.17, nitr1.18, nitr2.4, nitr2.6, nitr3r.2, nitr1.13, nitr1.15, nitr1.16, nitr2.5, nitr3.4 and nitr3r.1 genes for novel immune-type receptors and a nitr pseudogene, complete sequence Length = 127998 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 ttgcaacaaagcatggatc 61 ||||||||||||||||||| Sbjct: 3708 ttgcaacaaagcatggatc 3726
>gb|AC154399.5| Mus musculus chromosome 3, clone RP24-295P14, complete sequence Length = 165984 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 acttgcaacaaagcatgga 59 ||||||||||||||||||| Sbjct: 37924 acttgcaacaaagcatgga 37906
>gb|AC003673.3| Arabidopsis thaliana chromosome 2 clone F19F24 map CIC06E08, complete sequence Length = 99359 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 34 accacaaacttgcaacaaagcat 56 |||| |||||||||||||||||| Sbjct: 57091 accaaaaacttgcaacaaagcat 57113
>gb|AY056798.1| Arabidopsis thaliana At2g18940/F19F24.14 mRNA, complete cds Length = 2666 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 34 accacaaacttgcaacaaagcat 56 |||| |||||||||||||||||| Sbjct: 1035 accaaaaacttgcaacaaagcat 1013
>emb|AL591427.2| Zebrafish DNA sequence from clone BUSM1-219H16 in linkage group 7, complete sequence Length = 126202 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 ttgcaacaaagcatggatc 61 ||||||||||||||||||| Sbjct: 40636 ttgcaacaaagcatggatc 40618
>gb|AC107237.7| Mus musculus chromosome 3, clone RP23-475B9, complete sequence Length = 173716 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 acttgcaacaaagcatgga 59 ||||||||||||||||||| Sbjct: 108560 acttgcaacaaagcatgga 108578
>emb|AL132988.4|CNS01DTW Human chromosome 14 DNA sequence BAC R-320M16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157962 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 51 aagcatggatctctcactccaca 73 ||||| ||||||||||||||||| Sbjct: 124228 aagcagggatctctcactccaca 124206 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 475,471 Number of Sequences: 3902068 Number of extensions: 475471 Number of successful extensions: 36393 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36358 Number of HSP's gapped (non-prelim): 35 length of query: 96 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 75 effective length of database: 17,151,101,840 effective search space: 1286332638000 effective search space used: 1286332638000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)