Clone Name | rbart50c08 |
---|---|
Clone Library Name | barley_pub |
>SIG13_PANTR (Q64JA4) Sialic acid-binding Ig-like lectin 13 precursor| (Siglec-13) Length = 387 Score = 30.4 bits (67), Expect = 1.7 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%) Frame = +2 Query: 104 PPSFS------APVARTATINTHVTFTKKDKNHGARYTCSCPLGG 220 PP FS +P++ T +++ VT + ++HG+R TC L G Sbjct: 173 PPIFSWIGTSVSPLSPTTALSSVVTLIPQPQDHGSRLTCQVTLPG 217
>ACK1_HUMAN (Q07912) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1) (Tyrosine| kinase non-receptor protein 2) Length = 1036 Score = 29.6 bits (65), Expect = 2.9 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 8/42 (19%) Frame = +2 Query: 92 ILVPPPSFSAPVARTATI--------NTHVTFTKKDKNHGAR 193 +L+PPPS AP A TAT+ + F+ + N GAR Sbjct: 890 LLLPPPSTPAPAAPTATVRPMPQAALDPKANFSTNNSNPGAR 931
>ACK1_MOUSE (O54967) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1) (Non-receptor| protein tyrosine kinase Ack) (Tyrosine kinase non-receptor protein 2) Length = 1055 Score = 28.9 bits (63), Expect = 4.9 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 8/41 (19%) Frame = +2 Query: 95 LVPPPSFSAPVARTATI--------NTHVTFTKKDKNHGAR 193 L+PPPS AP A TAT+ + F+ + N GAR Sbjct: 908 LLPPPSTPAPAAPTATVRPMPQAAPDPKANFSTNNSNPGAR 948
>AGRN_DISOM (Q90404) Agrin (Fragment)| Length = 1328 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 8/47 (17%) Frame = +2 Query: 107 PSFSAPV-ARTATINTHVTFTKKDKNHGAR-------YTCSCPLGGG 223 P FS V R AT+ H + HG YTCSCP G G Sbjct: 593 PPFSRKVEVRPATVKVHRPCDSQPCLHGGTCEDDGVSYTCSCPAGRG 639
>NRG1_RAT (P43322) Pro-neuregulin-1, membrane-bound isoform precursor| (Pro-NRG1) [Contains: Neuregulin-1 (Neu differentiation factor) (Heregulin) (HRG) (Acetylcholine receptor-inducing activity) (ARIA) (Sensory and motor neuron-derived factor) (Glial grow Length = 662 Score = 28.1 bits (61), Expect = 8.3 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +2 Query: 131 RTATINTHVTFTKKDKNHGARYTCSCP 211 +T +N FT KD ++ +RY C CP Sbjct: 187 KTFCVNGGECFTVKDLSNPSRYLCKCP 213
>SYE_HALMA (Q5V5N9) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 579 Score = 28.1 bits (61), Expect = 8.3 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +2 Query: 143 INTHVTFTKKDKNHGARYTCSCPLG 217 + T+ + +K + G YTCSCP G Sbjct: 185 VETYYEYARKLIDKGGAYTCSCPQG 209 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,379,620 Number of Sequences: 219361 Number of extensions: 704439 Number of successful extensions: 1485 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1417 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1485 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)