ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SIG13_PANTR (Q64JA4) Sialic acid-binding Ig-like lectin 13 precu... 30 1.7
2ACK1_HUMAN (Q07912) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-... 30 2.9
3ACK1_MOUSE (O54967) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-... 29 4.9
4AGRN_DISOM (Q90404) Agrin (Fragment) 28 6.4
5NRG1_RAT (P43322) Pro-neuregulin-1, membrane-bound isoform precu... 28 8.3
6SYE_HALMA (Q5V5N9) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 28 8.3

>SIG13_PANTR (Q64JA4) Sialic acid-binding Ig-like lectin 13 precursor|
           (Siglec-13)
          Length = 387

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
 Frame = +2

Query: 104 PPSFS------APVARTATINTHVTFTKKDKNHGARYTCSCPLGG 220
           PP FS      +P++ T  +++ VT   + ++HG+R TC   L G
Sbjct: 173 PPIFSWIGTSVSPLSPTTALSSVVTLIPQPQDHGSRLTCQVTLPG 217



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>ACK1_HUMAN (Q07912) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1) (Tyrosine|
            kinase non-receptor protein 2)
          Length = 1036

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
 Frame = +2

Query: 92   ILVPPPSFSAPVARTATI--------NTHVTFTKKDKNHGAR 193
            +L+PPPS  AP A TAT+        +    F+  + N GAR
Sbjct: 890  LLLPPPSTPAPAAPTATVRPMPQAALDPKANFSTNNSNPGAR 931



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>ACK1_MOUSE (O54967) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1) (Non-receptor|
            protein tyrosine kinase Ack) (Tyrosine kinase
            non-receptor protein 2)
          Length = 1055

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
 Frame = +2

Query: 95   LVPPPSFSAPVARTATI--------NTHVTFTKKDKNHGAR 193
            L+PPPS  AP A TAT+        +    F+  + N GAR
Sbjct: 908  LLPPPSTPAPAAPTATVRPMPQAAPDPKANFSTNNSNPGAR 948



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>AGRN_DISOM (Q90404) Agrin (Fragment)|
          Length = 1328

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
 Frame = +2

Query: 107 PSFSAPV-ARTATINTHVTFTKKDKNHGAR-------YTCSCPLGGG 223
           P FS  V  R AT+  H     +   HG         YTCSCP G G
Sbjct: 593 PPFSRKVEVRPATVKVHRPCDSQPCLHGGTCEDDGVSYTCSCPAGRG 639



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>NRG1_RAT (P43322) Pro-neuregulin-1, membrane-bound isoform precursor|
           (Pro-NRG1) [Contains: Neuregulin-1 (Neu differentiation
           factor) (Heregulin) (HRG) (Acetylcholine
           receptor-inducing activity) (ARIA) (Sensory and motor
           neuron-derived factor) (Glial grow
          Length = 662

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 131 RTATINTHVTFTKKDKNHGARYTCSCP 211
           +T  +N    FT KD ++ +RY C CP
Sbjct: 187 KTFCVNGGECFTVKDLSNPSRYLCKCP 213



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>SYE_HALMA (Q5V5N9) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 579

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 143 INTHVTFTKKDKNHGARYTCSCPLG 217
           + T+  + +K  + G  YTCSCP G
Sbjct: 185 VETYYEYARKLIDKGGAYTCSCPQG 209


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,379,620
Number of Sequences: 219361
Number of extensions: 704439
Number of successful extensions: 1485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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