ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia p... 29 5.1
2IL1R1_MOUSE (P13504) Interleukin-1 receptor type I precursor (IL... 29 5.1
3MATK_ARIGL (Q4H1B9) Maturase K (Intron maturase) 28 6.7
4MATK_MUSLA (Q8HV04) Maturase K (Intron maturase) 28 8.8

>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
            (Trithorax homolog 2)
          Length = 2715

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 285  PWSELVEHSGSELVNDLLQRRVSPTCSNQGAKNDDHDDQRNLNP 416
            P  E+V H G E  + LLQR+ +  C  Q    D  +D  +  P
Sbjct: 1054 PREEVVAHPGPEEQDSLLQRKSARRCVKQRPSYDIFEDSDDSEP 1097



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>IL1R1_MOUSE (P13504) Interleukin-1 receptor type I precursor (IL-1R-1) (p80)|
           (CD121a antigen)
          Length = 576

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 360 KWDLLFSAEDHSRVLNPSVPRVQTMVTSLSVWLVFCSNAKFP 235
           +W+  F AED+  V +PS  R  T++T+L++  V     ++P
Sbjct: 271 EWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYP 312



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>MATK_ARIGL (Q4H1B9) Maturase K (Intron maturase)|
          Length = 522

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +1

Query: 148 FCTIPASPTTNHDWTTLSRRSCCSL*MRFWKFCIATEHQPDGQRCYHGL 294
           FCT+   P +   WT LS         RF + C    H   G    HGL
Sbjct: 396 FCTVSGHPISKPIWTDLSDSYIIE---RFGRICRNLSHYHSGSSKKHGL 441



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>MATK_MUSLA (Q8HV04) Maturase K (Intron maturase)|
          Length = 511

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +1

Query: 148 FCTIPASPTTNHDWTTLSRRSCCSL*MRFWKFCIATEHQPDG 273
           FCT+   P +   WT LS    C +  RF + C    H   G
Sbjct: 385 FCTVSGHPISKSIWTDLSD---CDIINRFGRICRNLSHYHSG 423


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,120,719
Number of Sequences: 219361
Number of extensions: 1025871
Number of successful extensions: 2291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2291
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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