Clone Name | rbart50c07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC153728.1| Mus musculus BAC RP23-83N17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226417 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 gcagagaagagtaagtcccact 359 |||||||||||||||||||||| Sbjct: 119286 gcagagaagagtaagtcccact 119307
>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence Length = 247394 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 gcagagaagagtaagtcccact 359 |||||||||||||||||||||| Sbjct: 70213 gcagagaagagtaagtcccact 70234
>gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complete sequence Length = 230313 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 338 gcagagaagagtaagtcccact 359 |||||||||||||||||||||| Sbjct: 167593 gcagagaagagtaagtcccact 167572
>emb|AL671863.6| Mouse DNA sequence from clone RP23-88N4 on chromosome 11, complete sequence Length = 108660 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 333 cttctgcagagaagagtaagtccca 357 |||||| |||||||||||||||||| Sbjct: 23055 cttctggagagaagagtaagtccca 23079
>emb|BX324223.23| Zebrafish DNA sequence from clone CH211-217F24 in linkage group 21, complete sequence Length = 223297 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 aatgatcttctgcagagaaga 347 ||||||||||||||||||||| Sbjct: 125584 aatgatcttctgcagagaaga 125564
>gb|AY522504.1| Lyngbya majuscula jamaicamide biosynthesis gene cluster, complete sequence Length = 69900 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 caaccaaggagccaagaacgatga 388 ||||||||||||||| |||||||| Sbjct: 15579 caaccaaggagccaaaaacgatga 15602
>gb|AC099849.4| Homo sapiens chromosome 18, clone RP11-863N1, complete sequence Length = 200606 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tctgttctgcactatccctgcctc 167 |||| ||||||||||||||||||| Sbjct: 106620 tctgctctgcactatccctgcctc 106643
>emb|AL139393.13| Human DNA sequence from clone RP3-428L16 on chromosome 6q26-27 Contains part of a novel gene and the 5' end of the MAP3K4 gene for mitogen-activated protein kinase kinase kinase 4 (MTK1, MEKK4, MAPKKK4, KIAA0213, homolog of yeast SSK2/SSK22 MAP kinase kinase kinase). Contains a CpG island, complete sequence Length = 85624 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 ataaaatgatccagtgcatttggtttttcaca 32 ||||||| ||||||||||||| || ||||||| Sbjct: 70421 ataaaattatccagtgcattttgtctttcaca 70390
>gb|AC099731.5| Homo sapiens BAC clone RP11-1244M4 from 7, complete sequence Length = 216250 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gctacagaacaccaaccaga 269 |||||||||||||||||||| Sbjct: 73107 gctacagaacaccaaccaga 73088
>gb|AC006546.9| Homo sapiens chromosome 18 clone p1-1029 map 18q11, complete sequence Length = 79128 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tctgttctgcactatccctgcctc 167 |||| ||||||||||||||||||| Sbjct: 35153 tctgctctgcactatccctgcctc 35176
>gb|AC006545.3| Homo sapiens chromosome 18 clone p1-1028 map 18q11, complete sequence Length = 78735 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tctgttctgcactatccctgcctc 167 |||| ||||||||||||||||||| Sbjct: 20903 tctgctctgcactatccctgcctc 20926
>gb|AC007827.5|AC007827 Drosophila melanogaster, chromosome 3R, region 98E-98E, BAC clone BACR10P23, complete sequence Length = 180946 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gccaagaacgatgatcatga 394 |||||||||||||||||||| Sbjct: 8152 gccaagaacgatgatcatga 8133
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tgctttactagaaacagaaa 104 |||||||||||||||||||| Sbjct: 19000529 tgctttactagaaacagaaa 19000510
>gb|AC144411.2| Homo sapiens BAC clone GS1-146C24 from 7, complete sequence Length = 178059 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gctacagaacaccaaccaga 269 |||||||||||||||||||| Sbjct: 128215 gctacagaacaccaaccaga 128196
>gb|AC009213.5|AC009213 Drosophila melanogaster, chromosome 3R, region 98D-98D, BAC clone BACR09F18, complete sequence Length = 182525 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gccaagaacgatgatcatga 394 |||||||||||||||||||| Sbjct: 159689 gccaagaacgatgatcatga 159670
>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1198_B10 Length = 119768 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tgctttactagaaacagaaa 104 |||||||||||||||||||| Sbjct: 85449 tgctttactagaaacagaaa 85430
>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1051_A08 Length = 137583 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tgctttactagaaacagaaa 104 |||||||||||||||||||| Sbjct: 25316 tgctttactagaaacagaaa 25297
>emb|BX957273.10| Zebrafish DNA sequence from clone CH211-210P17 in linkage group 9, complete sequence Length = 150430 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggtttttcacagtggaatg 40 |||||||||||||||||||| Sbjct: 21284 tggtttttcacagtggaatg 21265
>emb|BX470257.13| Zebrafish DNA sequence from clone DKEY-99O15 in linkage group 18, complete sequence Length = 80589 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggtttttcacagtggaatg 40 |||||||||||||||||||| Sbjct: 67271 tggtttttcacagtggaatg 67252
>gb|AE003766.2| Drosophila melanogaster chromosome 3R, section 104 of 118 of the complete sequence Length = 232302 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gccaagaacgatgatcatga 394 |||||||||||||||||||| Sbjct: 51079 gccaagaacgatgatcatga 51060
>emb|BX544889.5| Mouse DNA sequence from clone RP23-216C16 on chromosome 4, complete sequence Length = 93737 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cctacaatataagcatgtac 75 |||||||||||||||||||| Sbjct: 80843 cctacaatataagcatgtac 80824
>gb|AC174068.1| Homo sapiens chromosome 12 clone WI2-678K21, complete sequence Length = 44340 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 tttggaaattttgcattgct 252 |||||||||||||||||||| Sbjct: 39462 tttggaaattttgcattgct 39443 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,986,066 Number of Sequences: 3902068 Number of extensions: 3986066 Number of successful extensions: 75865 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75807 Number of HSP's gapped (non-prelim): 58 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)