ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC153728.1| Mus musculus BAC RP23-83N17 (Roswell Park Cancer... 44 0.36
2gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, com... 44 0.36
3gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complet... 44 0.36
4emb|AL671863.6| Mouse DNA sequence from clone RP23-88N4 on chrom... 42 1.4
5emb|BX324223.23| Zebrafish DNA sequence from clone CH211-217F24 ... 42 1.4
6gb|AY522504.1| Lyngbya majuscula jamaicamide biosynthesis gene c... 40 5.7
7gb|AC099849.4| Homo sapiens chromosome 18, clone RP11-863N1, com... 40 5.7
8emb|AL139393.13| Human DNA sequence from clone RP3-428L16 on chr... 40 5.7
9gb|AC099731.5| Homo sapiens BAC clone RP11-1244M4 from 7, comple... 40 5.7
10gb|AC006546.9| Homo sapiens chromosome 18 clone p1-1029 map 18q1... 40 5.7
11gb|AC006545.3| Homo sapiens chromosome 18 clone p1-1028 map 18q1... 40 5.7
12gb|AC007827.5|AC007827 Drosophila melanogaster, chromosome 3R, r... 40 5.7
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
14gb|AC144411.2| Homo sapiens BAC clone GS1-146C24 from 7, complet... 40 5.7
15gb|AC009213.5|AC009213 Drosophila melanogaster, chromosome 3R, r... 40 5.7
16dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
17dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
18emb|BX957273.10| Zebrafish DNA sequence from clone CH211-210P17 ... 40 5.7
19emb|BX470257.13| Zebrafish DNA sequence from clone DKEY-99O15 in... 40 5.7
20gb|AE003766.2| Drosophila melanogaster chromosome 3R, section 10... 40 5.7
21emb|BX544889.5| Mouse DNA sequence from clone RP23-216C16 on chr... 40 5.7
22gb|AC174068.1| Homo sapiens chromosome 12 clone WI2-678K21, comp... 40 5.7

>gb|AC153728.1| Mus musculus  BAC RP23-83N17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 226417

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 338    gcagagaagagtaagtcccact 359
              ||||||||||||||||||||||
Sbjct: 119286 gcagagaagagtaagtcccact 119307



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>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence
          Length = 247394

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 338   gcagagaagagtaagtcccact 359
             ||||||||||||||||||||||
Sbjct: 70213 gcagagaagagtaagtcccact 70234



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>gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complete sequence
          Length = 230313

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 338    gcagagaagagtaagtcccact 359
              ||||||||||||||||||||||
Sbjct: 167593 gcagagaagagtaagtcccact 167572



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>emb|AL671863.6| Mouse DNA sequence from clone RP23-88N4 on chromosome 11, complete
             sequence
          Length = 108660

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 333   cttctgcagagaagagtaagtccca 357
             |||||| ||||||||||||||||||
Sbjct: 23055 cttctggagagaagagtaagtccca 23079



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>emb|BX324223.23| Zebrafish DNA sequence from clone CH211-217F24 in linkage group 21,
              complete sequence
          Length = 223297

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 327    aatgatcttctgcagagaaga 347
              |||||||||||||||||||||
Sbjct: 125584 aatgatcttctgcagagaaga 125564



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>gb|AY522504.1| Lyngbya majuscula jamaicamide biosynthesis gene cluster, complete
             sequence
          Length = 69900

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 365   caaccaaggagccaagaacgatga 388
             ||||||||||||||| ||||||||
Sbjct: 15579 caaccaaggagccaaaaacgatga 15602



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>gb|AC099849.4| Homo sapiens chromosome 18, clone RP11-863N1, complete sequence
          Length = 200606

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 144    tctgttctgcactatccctgcctc 167
              |||| |||||||||||||||||||
Sbjct: 106620 tctgctctgcactatccctgcctc 106643



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>emb|AL139393.13| Human DNA sequence from clone RP3-428L16 on chromosome 6q26-27 Contains
             part of a novel gene and the 5' end of the MAP3K4 gene for
             mitogen-activated protein kinase kinase kinase 4 (MTK1,
             MEKK4, MAPKKK4, KIAA0213, homolog of yeast SSK2/SSK22 MAP
             kinase kinase kinase). Contains a CpG island, complete
             sequence
          Length = 85624

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 1     ataaaatgatccagtgcatttggtttttcaca 32
             ||||||| ||||||||||||| || |||||||
Sbjct: 70421 ataaaattatccagtgcattttgtctttcaca 70390



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>gb|AC099731.5| Homo sapiens BAC clone RP11-1244M4 from 7, complete sequence
          Length = 216250

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   gctacagaacaccaaccaga 269
             ||||||||||||||||||||
Sbjct: 73107 gctacagaacaccaaccaga 73088



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>gb|AC006546.9| Homo sapiens chromosome 18 clone p1-1029 map 18q11, complete sequence
          Length = 79128

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 144   tctgttctgcactatccctgcctc 167
             |||| |||||||||||||||||||
Sbjct: 35153 tctgctctgcactatccctgcctc 35176



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>gb|AC006545.3| Homo sapiens chromosome 18 clone p1-1028 map 18q11, complete sequence
          Length = 78735

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 144   tctgttctgcactatccctgcctc 167
             |||| |||||||||||||||||||
Sbjct: 20903 tctgctctgcactatccctgcctc 20926



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>gb|AC007827.5|AC007827 Drosophila melanogaster, chromosome 3R, region 98E-98E, BAC clone
            BACR10P23, complete sequence
          Length = 180946

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 375  gccaagaacgatgatcatga 394
            ||||||||||||||||||||
Sbjct: 8152 gccaagaacgatgatcatga 8133



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 85       tgctttactagaaacagaaa 104
                ||||||||||||||||||||
Sbjct: 19000529 tgctttactagaaacagaaa 19000510



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>gb|AC144411.2| Homo sapiens BAC clone GS1-146C24 from 7, complete sequence
          Length = 178059

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    gctacagaacaccaaccaga 269
              ||||||||||||||||||||
Sbjct: 128215 gctacagaacaccaaccaga 128196



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>gb|AC009213.5|AC009213 Drosophila melanogaster, chromosome 3R, region 98D-98D, BAC clone
              BACR09F18, complete sequence
          Length = 182525

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    gccaagaacgatgatcatga 394
              ||||||||||||||||||||
Sbjct: 159689 gccaagaacgatgatcatga 159670



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>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1198_B10
          Length = 119768

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    tgctttactagaaacagaaa 104
             ||||||||||||||||||||
Sbjct: 85449 tgctttactagaaacagaaa 85430



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>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1051_A08
          Length = 137583

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    tgctttactagaaacagaaa 104
             ||||||||||||||||||||
Sbjct: 25316 tgctttactagaaacagaaa 25297



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>emb|BX957273.10| Zebrafish DNA sequence from clone CH211-210P17 in linkage group 9,
             complete sequence
          Length = 150430

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tggtttttcacagtggaatg 40
             ||||||||||||||||||||
Sbjct: 21284 tggtttttcacagtggaatg 21265



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>emb|BX470257.13| Zebrafish DNA sequence from clone DKEY-99O15 in linkage group 18,
             complete sequence
          Length = 80589

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tggtttttcacagtggaatg 40
             ||||||||||||||||||||
Sbjct: 67271 tggtttttcacagtggaatg 67252



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>gb|AE003766.2| Drosophila melanogaster chromosome 3R, section 104 of 118 of the
             complete sequence
          Length = 232302

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   gccaagaacgatgatcatga 394
             ||||||||||||||||||||
Sbjct: 51079 gccaagaacgatgatcatga 51060



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>emb|BX544889.5| Mouse DNA sequence from clone RP23-216C16 on chromosome 4, complete
             sequence
          Length = 93737

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    cctacaatataagcatgtac 75
             ||||||||||||||||||||
Sbjct: 80843 cctacaatataagcatgtac 80824



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>gb|AC174068.1| Homo sapiens chromosome 12 clone WI2-678K21, complete sequence
          Length = 44340

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   tttggaaattttgcattgct 252
             ||||||||||||||||||||
Sbjct: 39462 tttggaaattttgcattgct 39443


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,986,066
Number of Sequences: 3902068
Number of extensions: 3986066
Number of successful extensions: 75865
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75807
Number of HSP's gapped (non-prelim): 58
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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