>REV_HV1BN (P12485) REV protein (Anti-repression transactivator protein)|
           (ART/TRS) (Fragment)
          Length = 106

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 125 NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 247
           N+    +A +R I  L+GW+L +  GR+     L +PP++R
Sbjct: 30  NRRRRWRARQRQIQSLSGWILSTFLGRSAEPVPLQLPPLER 70

>REV_HV1OY (P20887) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 125 NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 247
           N+    +  +R I  ++GW+L +  GR+     L +PP++R
Sbjct: 40  NRRRRWRERQRQIRKISGWILSTYLGRSAEPVPLQLPPLER 80

>REV_HV1A2 (P04623) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 125 NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 247
           N+    +  +R I  ++GW+L +  GR+     L +PP++R
Sbjct: 40  NRRRRWRERQRQIRSISGWILSTYLGRSAEPVPLQLPPLER 80

>REV_HV1SC (P05872) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 125 NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 247
           N+    +  +R I  ++GW+L +  GR      L +PP++R
Sbjct: 40  NRRRRWRERQRQIRSISGWILSNYLGRLAEPVPLQLPPLER 80

>TOM1_MOUSE (O88746) Target of Myb protein 1|
          Length = 492

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +2

Query: 50  QRMHRFRSLNTDLSSSSFYTTR*MTNQNGSKKATRRMISVLAGWLLVSSTGRAGNSSL 223
           +R  RFR+  T  +SS       + +      AT  + S LAG  L S + RAG  SL
Sbjct: 299 ERFERFRTGQTAKASSEAELATDLIDMGPDPAATNNLSSQLAGMNLGSRSVRAGLQSL 356

>TOM1_HUMAN (O60784) Target of Myb protein 1|
          Length = 492

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +2

Query: 50  QRMHRFRSLNTDLSSSSFYTTR*MTNQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLA 229
           +R  RFR+  T  + S       + +      AT  + S LAG  L SS+ RAG  SL A
Sbjct: 299 ERFERFRTGQTTKAPSEAEPAADLIDMGPDPAATGNLSSQLAGMNLGSSSVRAGLQSLEA 358

>REV_HV1J3 (P12484) REV protein (Anti-repression transactivator protein)|
           (ART/TRS) (Fragment)
          Length = 113

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 125 NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 247
           N+    +  +R I  ++GW++ +  GR      L +PP++R
Sbjct: 37  NRRRRWRQRQRQIRSISGWIISNYLGRPAEPVPLQLPPLER 77

>REV_HV1C4 (P05865) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 125 NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 247
           N+    +  +R I  ++ WLL +  GR+     L +PP++R
Sbjct: 40  NRRRRWRERQRRIHSISAWLLSTCLGRSAEPVPLQLPPLER 80

>RFBC_SHIFL (P37780) dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)|
           (dTDP-4-keto-6-deoxyglucose 3,5-epimerase)
           (dTDP-L-rhamnose synthetase)
          Length = 181

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 130 KWIEESYPAHDQRSCWLATGFLHG 201
           KW+  +  A ++R  W+  GF HG
Sbjct: 97  KWVGVNLSAENKRQLWIPEGFAHG 120

>REV_HV1Y2 (P35960) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 95  SSFYTTR*MTNQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 247
           SS  T +   N+    +  +R I  ++GWLL +  GR        +PP++R
Sbjct: 30  SSEGTRQARRNRRRRWRERQRQIRSISGWLLSNYLGRPTEPVPFQLPPLER 80

>NUMA1_HUMAN (Q14980) Nuclear mitotic apparatus protein 1 (NuMA protein) (SP-H|
            antigen)
          Length = 2115

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 29/104 (27%), Positives = 48/104 (46%)
 Frame = +2

Query: 2    RKADRQTPFQINSMIVQRMHRFRSLNTDLSSSSFYTTR*MTNQNGSKKATRRMISVLAGW 181
            R A R+T   IN  + +++        D ++SSFY+TR       S +AT    S     
Sbjct: 1805 RSARRRTTQIINITMTKKLD---VEEPDSANSSFYSTRSAPASQASLRATSSTQS----- 1856

Query: 182  LLVSSTGRAGNSSLLAIPPMQRRWRTQM*REREKKNDQIISSGA 313
            L    +   GNS+LL++P  +   R+       +++   +SSGA
Sbjct: 1857 LARLGSPDYGNSALLSLPGYRPTTRSS-----ARRSQAGVSSGA 1895

>RP1_SAIBB (Q8MJ03) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein|
            homolog)
          Length = 2149

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = +1

Query: 139  EESYPAHDQRSCWLATGFLHGAGRKLFPVSN------PSDAAKMAHADVE 270
            EE  P   +R C   T     AG K++PVS+      P   + M H  ++
Sbjct: 1847 EEKCPHQSERICTSVTHSFMSAGNKVYPVSDDAIKNQPLPGSNMIHGTLQ 1896


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,007,771
Number of Sequences: 219361
Number of extensions: 864241
Number of successful extensions: 2018
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2010
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)