ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domai... 28 7.2
2EX1_BUCBP (Q89A43) Exodeoxyribonuclease I (EC 3.1.11.1) (Exonucl... 28 7.2
3ADM2_RAT (P61312) ADM2 precursor (Intermedin) [Contains: Adrenom... 28 7.2
4GPR37_HUMAN (O15354) Probable G-protein coupled receptor 37 prec... 27 9.4
5RECO_CHLMU (Q9PJS3) DNA repair protein recO (Recombination prote... 27 9.4
6YKW2_YEAST (P35995) Putative 82.2 kDa transcriptional regulatory... 27 9.4
7MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 27 9.4
8IGF1R_XENLA (O73798) Insulin-like growth factor 1 receptor precu... 27 9.4

>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like|
           domain-containing protein 4) (Multiple EGF-like domain
           protein 4)
          Length = 2386

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 347 GAHGERL-PGAFGSAQEGQGLRPLPC 273
           G H ER  PG+FG+A   +G RP  C
Sbjct: 729 GEHCERCRPGSFGNATGSRGCRPCQC 754



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>EX1_BUCBP (Q89A43) Exodeoxyribonuclease I (EC 3.1.11.1) (Exonuclease I) (DNA|
           deoxyribophosphodiesterase) (dRPase)
          Length = 481

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 257 PICQSILIVGWVRQYSLLCFVTEFEFQ*TNYTFVVHLKDCII 132
           P  +S+LI G   +Y+ L  V EFEF    Y+  +    CII
Sbjct: 59  PDPESVLITGISPKYTSLFGVNEFEFAKKIYSLFMKSDTCII 100



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>ADM2_RAT (P61312) ADM2 precursor (Intermedin) [Contains: Adrenomedullin-2|
           (Intermedin-long) (IMDL); Intermedin-short (IMDS)]
          Length = 146

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 226 HPTMS-MLWQIGDVRQTQGSGLRPWPSWALPNAPGSRSP*APSRHV 360
           HP++  ++W+     Q QG G     +  LP   GSR P  P RHV
Sbjct: 50  HPSLRPVVWKPPHALQPQGRGNPALATVHLPQGGGSRHP-GPQRHV 94



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>GPR37_HUMAN (O15354) Probable G-protein coupled receptor 37 precursor|
           (Endothelin B receptor-like protein 1) (ETBR-LP-1)
           (Parkin-associated endothelin receptor-like receptor)
           (PAELR)
          Length = 613

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 265 RQTQGSGLRPWPSWALPNAPG 327
           R+ QG+     PSW LP APG
Sbjct: 73  REEQGAAFLAGPSWDLPAAPG 93



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>RECO_CHLMU (Q9PJS3) DNA repair protein recO (Recombination protein O)|
          Length = 234

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 315 WQCPRRPRPKATSLRLAYITNLPEHTHSWVGSSIFV 208
           WQ   +P P+  SL L ++  +PE  H +  SS+F+
Sbjct: 103 WQ--EKPSPQLFSLFLNFLQRIPETPHPYFFSSMFL 136



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>YKW2_YEAST (P35995) Putative 82.2 kDa transcriptional regulatory protein in|
           FRE2 5'region
          Length = 705

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 285 ATSLRLAYITNLPEHTHSWVGSSIFVAVFRYGI*VPINQLHLCRSLERLYY 133
           AT   +  ++NL   TH          +F + +  P+N LHLC ++   Y+
Sbjct: 463 ATLHMIGSLSNLYTLTHQ----DFDARIFNFSVLAPLNSLHLCFNVLETYF 509



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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
           (High molecular weight salivary mucin MG1) (Sublingual
           gland mucin)
          Length = 5703

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 345 CSWRTTSGSVWQCPRRPRPKATSLR-LAYITNLPEHTHSWVGSSIFV 208
           CS  T SG +WQC   P P   S++  A+I+   E  +   G   +V
Sbjct: 405 CSSCTCSGGLWQCQDLPCPGTCSVQGGAHISTYDEKLYDLHGDCSYV 451



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>IGF1R_XENLA (O73798) Insulin-like growth factor 1 receptor precursor (EC|
           2.7.10.1) (xIGF-1R) (xIGFR) [Contains: Insulin-like
           growth factor 1 receptor alpha chain; Insulin-like
           growth factor 1 receptor beta chain]
          Length = 1358

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 123 YIQGLAVCITPAFCGTCGPNV 61
           +I GL +C+ PA    CGPN+
Sbjct: 12  WILGLLLCLGPAAAKVCGPNM 32


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,715,935
Number of Sequences: 219361
Number of extensions: 1130558
Number of successful extensions: 2443
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2442
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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