>gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS1) mRNA, complete
            cds
          Length = 1433

 Score =  708 bits (357), Expect = 0.0
 Identities = 360/361 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacaagcccaaaaatggcaccaacgttgctataattgatttagggaagtgcataggctaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 aacaagcccaaaaatggcaccaacgttgctataattgatttagggaagtgcataggctaa 1352

                                                                        
Query: 61   aacattaggaccacaagttccgcaaaaagcgggagtaatacaaacagccaggccttgtat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1351 aacattaggaccacaagttccgcaaaaagcgggagtaatacaaacagccaggccttgtat 1292

                                                                        
Query: 121  ataaagtttctaataatacaatctttcaagtgaacgacaaaggtgtaattggtttattgg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1291 ataaagtttctaataatacaatctttcaagtgaacgacaaaggtgtaattggtttattgg 1232

                                                                        
Query: 181  aactcaaattccgtaacgaaacacagcaacgaatattgacgaacccacccaactatgagt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1231 aactcaaattccgtaacgaaacacagcaacgaatattgacgaacccacccaactatgagt 1172

                                                                        
Query: 241  atgctctggcaaattggtgatgtacgccaaacgcagggaagtggccttaggccttggcct 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1171 atgctctggcaaattggtgatgtacgccaaacgcagggaagtggccttaggccttggcct 1112

                                                                        
Query: 301  tcttgggcactgccaaacgctcccggaagtcgttctccatgagcaccaagccgtcacgta 360
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1111 tcttgggcactgccaaacgctcccggaagtcgtcctccatgagcaccaagccgtcacgta 1052

             
Query: 361  g 361
            |
Sbjct: 1051 g 1051

>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene)
          Length = 1562

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 134  taatacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccg 193
            |||||||||||||||| |||||||||| | |||| |  ||||||||||||||||||||||
Sbjct: 1419 taatacaatctttcaattgaacgacaacgatgtattcagtttattggaactcaaattccg 1360

                    
Query: 194  taacgaaa 201
            ||| ||||
Sbjct: 1359 taatgaaa 1352



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                        
Query: 287  ttaggccttggccttcttgggcactgccaaacgctcccggaagtcgttctccatgagcac 346
            ||||||||| | || ||||||||| ||||  |||||||||||||| | ||||||||||||
Sbjct: 1291 ttaggccttagtctccttgggcacagccaggcgctcccggaagtcatcctccatgagcac 1232

                        
Query: 347  caagccgtcacg 358
            ||||||||||||
Sbjct: 1231 caagccgtcacg 1220



 Score = 46.1 bits (23), Expect = 0.078
 Identities = 61/71 (85%), Gaps = 2/71 (2%)
 Strand = Plus / Minus

                                                                        
Query: 21   caacgttgctataattgatttagggaagtgcataggcta-aaacattaggaccacaagtt 79
            |||| |||||||||| |||||||||| || |||| |||| |||||| || ||||||||||
Sbjct: 1527 caacattgctataatcgatttaggga-gtacataagctacaaacataagtaccacaagtt 1469

                       
Query: 80   ccgcaaaaagc 90
            | | |||||||
Sbjct: 1468 ctgtaaaaagc 1458

>gb|AY104952.1| Zea mays PCO092342 mRNA sequence
          Length = 1825

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                        
Query: 287  ttaggccttggccttcttgggcactgccaaacgctcccggaagtcgttctccatgagcac 346
            |||||||||||  ||||||||||| ||||  ||||||||||| || | ||||||||||||
Sbjct: 1535 ttaggccttggttttcttgggcacggccaggcgctcccggaaatcatcctccatgagcac 1476

                     
Query: 347  caagccgtc 355
            |||||||||
Sbjct: 1475 caagccgtc 1467



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 64/75 (85%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                        
Query: 128  ttctaataatacaatctttcaag-tgaacgacaaaggtgtaattggtttattggaactca 186
            ||||||| |||||||| |||||| ||| |||  ||||| || |  |||||||||||||||
Sbjct: 1684 ttctaatgatacaatccttcaaggtgatcgaagaaggtatattccgtttattggaactca 1625

                           
Query: 187  aattccgtaacgaaa 201
            |||||||||| ||||
Sbjct: 1624 aattccgtaatgaaa 1610

>gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence
          Length = 958

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 319 gctcccggaagtcgttctccatgagcaccaagccgtc 355
           |||||||||| || | |||||||||||||||||||||
Sbjct: 787 gctcccggaaatcatcctccatgagcaccaagccgtc 751



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 177 ttggaactcaaattccgtaacgaaa 201
           |||||||||||||||||||| ||||
Sbjct: 921 ttggaactcaaattccgtaatgaaa 897

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                           
Query: 286     cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgttctccatgagca 345
               ||||||||| |  |||||||||||||   |  ||||||||||| || |  ||||||||||
Sbjct: 9412292 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 9412233

                            
Query: 346     ccaagccgtcacg 358
               ||||||| |||||
Sbjct: 9412232 ccaagccatcacg 9412220



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 21      caacgttgctataattgatttagg 44
               |||| |||||||||||||||||||
Sbjct: 9412547 caacattgctataattgatttagg 9412524



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 128     ttctaataatacaatctttcaagtgaacgacaaaggtgta 167
               ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 9412442 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9412403

>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                          
Query: 286    cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgttctccatgagca 345
              ||||||||| |  |||||||||||||   |  ||||||||||| || |  ||||||||||
Sbjct: 109692 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 109633

                           
Query: 346    ccaagccgtcacg 358
              ||||||| |||||
Sbjct: 109632 ccaagccatcacg 109620



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     caacgttgctataattgatttagg 44
              |||| |||||||||||||||||||
Sbjct: 109947 caacattgctataattgatttagg 109924



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 128    ttctaataatacaatctttcaagtgaacgacaaaggtgta 167
              ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 109842 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 109803

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                           
Query: 286     cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgttctccatgagca 345
               ||||||||| |  |||||||||||||   |  ||||||||||| || |  ||||||||||
Sbjct: 9410413 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 9410354

                            
Query: 346     ccaagccgtcacg 358
               ||||||| |||||
Sbjct: 9410353 ccaagccatcacg 9410341



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 21      caacgttgctataattgatttagg 44
               |||| |||||||||||||||||||
Sbjct: 9410668 caacattgctataattgatttagg 9410645



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 128     ttctaataatacaatctttcaagtgaacgacaaaggtgta 167
               ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 9410563 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9410524

>dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRNA for UDP-glucuronic
            acid decarboxylase, complete cds
          Length = 1053

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 318  cgctcccggaagtcgttctccatgagcaccaagccgtcacg 358
            ||||||||||| || |  ||||||||||||||||| |||||
Sbjct: 1022 cgctcccggaaatcatcttccatgagcaccaagccatcacg 982

>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full
            insert sequence
          Length = 1811

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                        
Query: 286  cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgttctccatgagca 345
            ||||||||| |  |||||||||||||   |  ||||||||||| || |  ||||||||||
Sbjct: 1542 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 1483

                         
Query: 346  ccaagccgtcacg 358
            ||||||| |||||
Sbjct: 1482 ccaagccatcacg 1470



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   caacgttgctataattgatttagg 44
            |||| |||||||||||||||||||
Sbjct: 1797 caacattgctataattgatttagg 1774



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 128  ttctaataatacaatctttcaagtgaacgacaaaggtgta 167
            ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 1692 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1653

>dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A03, full
           insert sequence
          Length = 472

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                       
Query: 286 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgttctccatgagca 345
           ||||||||| |  |||||||||||||   |  ||||||||||| || |  ||||||||||
Sbjct: 207 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 148

                        
Query: 346 ccaagccgtcacg 358
           ||||||| |||||
Sbjct: 147 ccaagccatcacg 135



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 21  caacgttgctataattgatttagg 44
           |||| |||||||||||||||||||
Sbjct: 462 caacattgctataattgatttagg 439



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 128 ttctaataatacaatctttcaagtgaacgacaaaggtgta 167
           ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 357 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 318

>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full
            insert sequence
          Length = 1411

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                        
Query: 286  cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgttctccatgagca 345
            ||||||||| |  |||||||||||||   |  ||||||||||| || |  ||||||||||
Sbjct: 1153 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 1094

                         
Query: 346  ccaagccgtcacg 358
            ||||||| |||||
Sbjct: 1093 ccaagccatcacg 1081



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   caacgttgctataattgatttagg 44
            |||| |||||||||||||||||||
Sbjct: 1408 caacattgctataattgatttagg 1385



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 128  ttctaataatacaatctttcaagtgaacgacaaaggtgta 167
            ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 1303 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1264

>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     taattgatttagggaagtgc 51
              ||||||||||||||||||||
Sbjct: 657464 taattgatttagggaagtgc 657445

>gb|U23514.3| Caenorhabditis elegans cosmid F48E8, complete sequence
          Length = 35325

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   aaagtttctaataatacaat 142
             ||||||||||||||||||||
Sbjct: 20319 aaagtttctaataatacaat 20300

>emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chromosome 10 Contains part
              of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin G)
              and a novel gene, complete sequence
          Length = 145136

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    aaagtttctaataatacaat 142
              ||||||||||||||||||||
Sbjct: 103537 aaagtttctaataatacaat 103518

>emb|BX908396.13| Zebrafish DNA sequence from clone CH211-267G5 in linkage group 18,
              complete sequence
          Length = 149493

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    taaagtttctaataatacaa 141
              ||||||||||||||||||||
Sbjct: 107638 taaagtttctaataatacaa 107657

>gb|AC110615.3| Homo sapiens BAC clone RP11-556N4 from 4, complete sequence
          Length = 195101

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tatataaagtttctaataat 137
             ||||||||||||||||||||
Sbjct: 13115 tatataaagtttctaataat 13096

>gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Cancer Institute
           (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 207228

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 gacaaaggtgtaattggttt 175
           ||||||||||||||||||||
Sbjct: 337 gacaaaggtgtaattggttt 318

>gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosome 8, complete sequence
          Length = 193884

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    ttggccttcttgggcactgc 313
              ||||||||||||||||||||
Sbjct: 153079 ttggccttcttgggcactgc 153098

>gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 135177

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   gacaaaggtgtaattggttt 175
             ||||||||||||||||||||
Sbjct: 76946 gacaaaggtgtaattggttt 76927

>emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 in linkage group 18,
              complete sequence
          Length = 176163

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    taaagtttctaataatacaa 141
              ||||||||||||||||||||
Sbjct: 165685 taaagtttctaataatacaa 165666

>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete
              sequence
          Length = 231197

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    tatgagtatgctctggcaaa 253
              ||||||||||||||||||||
Sbjct: 208325 tatgagtatgctctggcaaa 208306

>emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chromosome 2, complete
             sequence
          Length = 159617

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   ttggccttcttgggcactgc 313
             ||||||||||||||||||||
Sbjct: 53068 ttggccttcttgggcactgc 53049


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,785,889
Number of Sequences: 3902068
Number of extensions: 2785889
Number of successful extensions: 49274
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49166
Number of HSP's gapped (non-prelim): 108
length of query: 361
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 339
effective length of database: 17,147,199,772
effective search space: 5812900722708
effective search space used: 5812900722708
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)