ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart50b10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y08490.1|HVATUB2 H.vulgare mRNA for alpha-tubulin 2 Length = 1708 Score = 410 bits (207), Expect = e-112 Identities = 207/207 (100%) Strand = Plus / Minus Query: 3 gaccaatatgttcttacaacacaacaggttgtaaaacaaacaccacaaagcaaacattca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1598 gaccaatatgttcttacaacacaacaggttgtaaaacaaacaccacaaagcaaacattca 1539 Query: 63 aacagacagataacagataaagccgcttgggcagatcataggatagcagtagtacgcctt 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1538 aacagacagataacagataaagccgcttgggcagatcataggatagcagtagtacgcctt 1479 Query: 123 gggaaagcaccaggaggcaggctctagtactcatcaccctcgtcaccatcctcaccatcg 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1478 gggaaagcaccaggaggcaggctctagtactcatcaccctcgtcaccatcctcaccatcg 1419 Query: 183 tcgaactcagcaccaacttcttcatag 209 ||||||||||||||||||||||||||| Sbjct: 1418 tcgaactcagcaccaacttcttcatag 1392
>gb|U40042.1|HVU40042 Hordeum vulgare alpha tubulin (tubA) mRNA, complete cds Length = 1629 Score = 410 bits (207), Expect = e-112 Identities = 207/207 (100%) Strand = Plus / Minus Query: 3 gaccaatatgttcttacaacacaacaggttgtaaaacaaacaccacaaagcaaacattca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1599 gaccaatatgttcttacaacacaacaggttgtaaaacaaacaccacaaagcaaacattca 1540 Query: 63 aacagacagataacagataaagccgcttgggcagatcataggatagcagtagtacgcctt 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1539 aacagacagataacagataaagccgcttgggcagatcataggatagcagtagtacgcctt 1480 Query: 123 gggaaagcaccaggaggcaggctctagtactcatcaccctcgtcaccatcctcaccatcg 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1479 gggaaagcaccaggaggcaggctctagtactcatcaccctcgtcaccatcctcaccatcg 1420 Query: 183 tcgaactcagcaccaacttcttcatag 209 ||||||||||||||||||||||||||| Sbjct: 1419 tcgaactcagcaccaacttcttcatag 1393
>gb|U76558.1|TAU76558 Triticum aestivum alpha-tubulin mRNA, complete cds Length = 1675 Score = 297 bits (150), Expect = 7e-78 Identities = 187/198 (94%), Gaps = 1/198 (0%) Strand = Plus / Minus Query: 12 gttcttacaacacaacaggttgtaaaacaaacaccacaaagcaaacattcaaacagacag 71 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1601 gttcttacaacacaacaggttgtaaaacaaacaccacaaagcaaacgttcaaacagacag 1542 Query: 72 ataacagataaagccgcttgggcagatcataggatagcagtagtacgccttgggaaagca 131 ||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||| Sbjct: 1541 ataacagataaagccactcgggcagatcataggatagcagtagcaagccttgggaaagca 1482 Query: 132 ccaggaggcaggctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactca 191 |||||||||||||| || |||||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 1481 ccaggaggcaggct-taatactcatcgccctcatcaccgtcctcaccctcgtcgaactca 1423 Query: 192 gcaccaacttcttcatag 209 |||||||||||||||||| Sbjct: 1422 gcaccaacttcttcatag 1405
>gb|BT016625.1| Zea mays clone Contig458 mRNA sequence Length = 1771 Score = 65.9 bits (33), Expect = 5e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcacc 196 ||||||||||| ||||||||||| |||||||| || || |||||||||||||| Sbjct: 1463 ctctagtactcgtcaccctcgtcgccatcctcgccctcatcgaactcagcacc 1411
>gb|BT017959.1| Zea mays clone EL01N0523A02.c mRNA sequence Length = 668 Score = 65.9 bits (33), Expect = 5e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcacc 196 ||||||||||| ||||||||||| |||||||| || || |||||||||||||| Sbjct: 326 ctctagtactcgtcaccctcgtcgccatcctcgccctcatcgaactcagcacc 274
>emb|X15704.1|ZMALPTUB Zea mays tandem genes for alpha1-tubulin and alpha2-tubulin Length = 9244 Score = 65.9 bits (33), Expect = 5e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcacc 196 ||||||||||| ||||||||||| |||||||| || || |||||||||||||| Sbjct: 8893 ctctagtactcgtcaccctcgtcgccatcctcgccctcatcgaactcagcacc 8841 Score = 61.9 bits (31), Expect = 7e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 145 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaac 199 |||||||||||||||| || ||||| |||||||| || || |||||||||||||| Sbjct: 5028 tctagtactcatcaccatcatcaccttcctcaccctcatcaaactcagcaccaac 4974
>emb|AJ005599.1|EIAJ5599 Eleusine indica mRNA for alpha-tubulin 1 (EiRtua1), complete cds Length = 1577 Score = 65.9 bits (33), Expect = 5e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 145 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagc 193 |||||||||| |||||||| ||||| |||||||| |||||||||||||| Sbjct: 1432 tctagtactcgtcaccctcatcaccttcctcaccctcgtcgaactcagc 1384
>emb|AJ005598.1|EIAJ5598 Eleusine indica mRNA for alpha-tubulin 1 (EiStua1), complete cds Length = 1636 Score = 65.9 bits (33), Expect = 5e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 145 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagc 193 |||||||||| |||||||| ||||| |||||||| |||||||||||||| Sbjct: 1451 tctagtactcgtcaccctcatcaccttcctcaccctcgtcgaactcagc 1403
>gb|AF008120.1|AF008120 Eleusine indica alpha tubulin 1 (TUA1) mRNA, complete cds Length = 1693 Score = 65.9 bits (33), Expect = 5e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 145 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagc 193 |||||||||| |||||||| ||||| |||||||| |||||||||||||| Sbjct: 1452 tctagtactcgtcaccctcatcaccttcctcaccctcgtcgaactcagc 1404
>gb|BT016539.1| Zea mays clone Contig372 mRNA sequence Length = 1712 Score = 63.9 bits (32), Expect = 2e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 145 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcacc 196 |||||||||| ||||||||||| || |||||||| ||||| ||||||||||| Sbjct: 1479 tctagtactcgtcaccctcgtcgccgtcctcaccctcgtcaaactcagcacc 1428
>emb|X73980.1|ZMTUA4 Z.mays mRNA for alpha-tubulin Length = 959 Score = 63.9 bits (32), Expect = 2e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 145 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcacc 196 |||||||||| ||||||||||| || |||||||| ||||| ||||||||||| Sbjct: 772 tctagtactcgtcaccctcgtcgccgtcctcaccctcgtcaaactcagcacc 721
>emb|AJ420856.1|ZMA420856 Zea mays partial mRNA for alpha tubulin (tua4 gene) Length = 630 Score = 63.9 bits (32), Expect = 2e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 145 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcacc 196 |||||||||| ||||||||||| || |||||||| ||||| ||||||||||| Sbjct: 443 tctagtactcgtcaccctcgtcgccgtcctcaccctcgtcaaactcagcacc 392
>emb|AJ132399.1|HVU132399 Hordeum vulgare mRNA for alpha-tubulin 3 Length = 1692 Score = 63.9 bits (32), Expect = 2e-07 Identities = 63/72 (87%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 132 ccaggaggcaggct-ctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactc 190 |||||||||||||| ||||||||| || ||||| ||||| ||||| || ||||||||||| Sbjct: 1514 ccaggaggcaggcttctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactc 1455 Query: 191 agcaccaacttc 202 || |||||||| Sbjct: 1454 ggcgccaacttc 1443
>gb|AY103544.1| Zea mays PCO076329 mRNA sequence Length = 1967 Score = 63.9 bits (32), Expect = 2e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 145 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcacc 196 |||||||||| ||||||||||| || |||||||| ||||| ||||||||||| Sbjct: 1586 tctagtactcgtcaccctcgtcgccgtcctcaccctcgtcaaactcagcacc 1535
>gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0095K08, complete sequence Length = 180999 Score = 61.9 bits (31), Expect = 7e-07 Identities = 43/47 (91%) Strand = Plus / Plus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactc 190 ||||||||||| |||||||| ||||| || ||||||||||||||||| Sbjct: 115642 ctctagtactcgtcaccctcatcaccctcgtcaccatcgtcgaactc 115688
>emb|X91807.1|OSTA136 O.sativa mRNA for alpha-tubulin (clone OSTA-136) Length = 1677 Score = 61.9 bits (31), Expect = 7e-07 Identities = 43/47 (91%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactc 190 ||||||||||| |||||||| ||||| || ||||||||||||||||| Sbjct: 1439 ctctagtactcgtcaccctcatcaccctcgtcaccatcgtcgaactc 1393
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 61.9 bits (31), Expect = 7e-07 Identities = 43/47 (91%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactc 190 ||||||||||| |||||||| ||||| || ||||||||||||||||| Sbjct: 7882306 ctctagtactcgtcaccctcatcaccctcgtcaccatcgtcgaactc 7882260
>dbj|AK105080.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-A05, full insert sequence Length = 359 Score = 61.9 bits (31), Expect = 7e-07 Identities = 43/47 (91%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactc 190 ||||||||||| |||||||| ||||| || ||||||||||||||||| Sbjct: 136 ctctagtactcgtcaccctcatcaccctcgtcaccatcgtcgaactc 90
>dbj|AK102560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097H22, full insert sequence Length = 1760 Score = 61.9 bits (31), Expect = 7e-07 Identities = 43/47 (91%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactc 190 ||||||||||| |||||||| ||||| || ||||||||||||||||| Sbjct: 1449 ctctagtactcgtcaccctcatcaccctcgtcaccatcgtcgaactc 1403
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 61.9 bits (31), Expect = 7e-07 Identities = 43/47 (91%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactc 190 ||||||||||| |||||||| ||||| || ||||||||||||||||| Sbjct: 7952393 ctctagtactcgtcaccctcatcaccctcgtcaccatcgtcgaactc 7952347
>emb|AJ586805.1| Setaria viridis tua2 gene for alpha tubulin, exons 1-4 Length = 2616 Score = 58.0 bits (29), Expect = 1e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 145 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagc 193 |||||||||| ||||||||||| || ||||| || |||||||||||||| Sbjct: 2561 tctagtactcgtcaccctcgtctccttcctcgccctcgtcgaactcagc 2513
>emb|X63180.1|ZMALTUB4B Z.mays (B37) mRNA for alpha-tubulin 4 Length = 236 Score = 58.0 bits (29), Expect = 1e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 145 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagc 193 |||||||||| ||||||||||| || |||||||| ||||| |||||||| Sbjct: 49 tctagtactcgtcaccctcgtcgccgtcctcaccctcgtcaaactcagc 1
>emb|AJ489275.1|CSA489275 Crocus sativus partial mRNA for alpha-tubulin Length = 331 Score = 58.0 bits (29), Expect = 1e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 150 tactcatcaccctcgtcaccatcctcacc 178 ||||||||||||||||||||||||||||| Sbjct: 224 tactcatcaccctcgtcaccatcctcacc 196
>gb|BT016741.1| Zea mays clone Contig574 mRNA sequence Length = 1677 Score = 54.0 bits (27), Expect = 2e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 145 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaac 199 |||||||||||||||| || ||||| ||||| || || || |||||||||||||| Sbjct: 1475 tctagtactcatcaccatcatcaccttcctcgccctcatcaaactcagcaccaac 1421
>ref|XM_633319.1| Dictyostelium discoideum putative AGC family protein kinase (DDB0219984), partial mRNA Length = 4008 Score = 44.1 bits (22), Expect = 0.17 Identities = 28/30 (93%) Strand = Plus / Plus Query: 153 tcatcaccctcgtcaccatcctcaccatcg 182 ||||||||||| |||||||| ||||||||| Sbjct: 1156 tcatcaccctcttcaccatcatcaccatcg 1185
>gb|BT016903.1| Zea mays clone Contig736 mRNA sequence Length = 571 Score = 44.1 bits (22), Expect = 0.17 Identities = 34/38 (89%) Strand = Plus / Plus Query: 159 ccctcgtcaccatcctcaccatcgtcgaactcagcacc 196 |||||||| || |||||||| ||||| ||||||||||| Sbjct: 242 ccctcgtcgccgtcctcaccctcgtcaaactcagcacc 279
>gb|AY345604.1| Gossypium hirsutum alpha-tubulin 2 mRNA, complete cds Length = 1589 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 187 actcagcaccaacttcttcata 208 |||||||||||||||||||||| Sbjct: 1398 actcagcaccaacttcttcata 1377
>gb|AY271670.1| Gossypium barbadense alpha-tubulin mRNA, partial cds Length = 495 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 187 actcagcaccaacttcttcata 208 |||||||||||||||||||||| Sbjct: 289 actcagcaccaacttcttcata 268
>gb|AF106569.1|AF106569 Gossypium hirsutum alpha-tubulin (TubA3) mRNA, partial cds Length = 555 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 187 actcagcaccaacttcttcata 208 |||||||||||||||||||||| Sbjct: 361 actcagcaccaacttcttcata 340
>gb|AF106568.1|AF106568 Gossypium hirsutum alpha-tubulin (TubA2) mRNA, partial cds Length = 734 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 187 actcagcaccaacttcttcata 208 |||||||||||||||||||||| Sbjct: 361 actcagcaccaacttcttcata 340
>gb|AC008138.5| Drosophila melanogaster clone BACR27A15, complete sequence Length = 178208 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Plus Query: 159 ccctcgtcaccatcctcaccatcgt 183 |||||||||||||| |||||||||| Sbjct: 58136 ccctcgtcaccatcatcaccatcgt 58160
>gb|AC171267.17| Medicago truncatula clone mth2-17i7, complete sequence Length = 108819 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 ctcagcaccaacttcttcata 208 ||||||||||||||||||||| Sbjct: 65184 ctcagcaccaacttcttcata 65204
>gb|AC125486.4| Mus musculus BAC clone RP23-21G7 from chromosome 10, complete sequence Length = 222316 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 catcaccctcgtcaccatcctcacc 178 |||||||||| |||||||||||||| Sbjct: 166389 catcaccctcatcaccatcctcacc 166413
>gb|AC026803.7| Homo sapiens chromosome 19 clone CTD-2639E6, complete sequence Length = 224271 Score = 42.1 bits (21), Expect = 0.68 Identities = 27/29 (93%) Strand = Plus / Minus Query: 153 tcatcaccctcgtcaccatcctcaccatc 181 |||||| |||| ||||||||||||||||| Sbjct: 59102 tcatcatcctcatcaccatcctcaccatc 59074
>gb|AC012629.9| Homo sapiens chromosome 5 clone CTD-2154B17, complete sequence Length = 171603 Score = 42.1 bits (21), Expect = 0.68 Identities = 27/29 (93%) Strand = Plus / Plus Query: 153 tcatcaccctcgtcaccatcctcaccatc 181 ||||||||||| |||||||| |||||||| Sbjct: 166046 tcatcaccctcatcaccatcatcaccatc 166074
>gb|AE003632.4| Drosophila melanogaster chromosome 2L, section 41 of 83 of the complete sequence Length = 244231 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Plus Query: 159 ccctcgtcaccatcctcaccatcgt 183 |||||||||||||| |||||||||| Sbjct: 171216 ccctcgtcaccatcatcaccatcgt 171240
>gb|AC110576.12| Mus musculus chromosome 8, clone RP23-329K17, complete sequence Length = 224141 Score = 42.1 bits (21), Expect = 0.68 Identities = 27/29 (93%) Strand = Plus / Plus Query: 153 tcatcaccctcgtcaccatcctcaccatc 181 |||||||| || ||||||||||||||||| Sbjct: 66552 tcatcaccatcatcaccatcctcaccatc 66580
>emb|BX072579.14| Human DNA sequence from clone RP11-199F6 on chromosome 13 Contains the GAS6 gene for growth arrest-specific 6, six novel genes and ten CpG islands, complete sequence Length = 170020 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Plus Query: 153 tcatcaccctcgtcaccatcctcac 177 |||||||||||||||||||| |||| Sbjct: 19462 tcatcaccctcgtcaccatcatcac 19486
>ref|NM_126345.2| Arabidopsis thaliana unknown protein AT2G02910 mRNA, complete cds Length = 1578 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 aacaaacaccacaaagcaaacatt 60 |||||||| ||||||||||||||| Sbjct: 778 aacaaacatcacaaagcaaacatt 755
>gb|AC123732.9| Mus musculus chromosome 1, clone RP23-459I8, complete sequence Length = 158620 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 caaacagacagataacagataaag 84 |||||| ||||||||||||||||| Sbjct: 140354 caaacaaacagataacagataaag 140377
>gb|AC162171.7| Mus musculus chromosome 5, clone RP23-143N11, complete sequence Length = 229553 Score = 40.1 bits (20), Expect = 2.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 153 tcatcaccctcgtcaccatcctcaccatcgtc 184 |||||||| || |||||||| ||||||||||| Sbjct: 218767 tcatcaccatcatcaccatcatcaccatcgtc 218798
>gb|AC008255.9| Drosophila melanogaster clone BACR48D17, complete sequence Length = 183316 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 caccacaaagcaaacattcaaaca 66 |||| ||||||||||||||||||| Sbjct: 17444 caccgcaaagcaaacattcaaaca 17421
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete sequence Length = 129440 Score = 40.1 bits (20), Expect = 2.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaac 199 ||||||||||| ||||| || || ||||||||| |||||| ||||||| ||||| Sbjct: 66961 ctctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaac 66906
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 2.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaac 199 ||||||||||| ||||| || || ||||||||| |||||| ||||||| ||||| Sbjct: 29235146 ctctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaac 29235091
>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete sequence Length = 139788 Score = 40.1 bits (20), Expect = 2.7 Identities = 47/56 (83%) Strand = Plus / Plus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaac 199 ||||||||||| ||||| || || ||||||||| |||||| ||||||| ||||| Sbjct: 120854 ctctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaac 120909
>gb|AC004931.1| Homo sapiens PAC clone RP5-922I23 from 7, complete sequence Length = 145844 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 aagcaaacattcaaacagac 69 |||||||||||||||||||| Sbjct: 41555 aagcaaacattcaaacagac 41574
>gb|AC118051.7| Mus musculus chromosome 1, clone RP24-430E15, complete sequence Length = 180197 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 caaacagacagataacagataaag 84 |||||| ||||||||||||||||| Sbjct: 163017 caaacaaacagataacagataaag 162994
>gb|AC136986.6| Mus musculus chromosome 12, clone RP23-187H12, complete sequence Length = 206332 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 acaaagcaaacattcaaacagaca 70 |||||| ||||||||||||||||| Sbjct: 126522 acaaagaaaacattcaaacagaca 126545
>emb|Z31371.1|A7120FTSZ Anabaena 7120 ftsZ and gsh-III genes Length = 3034 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 ccatcgtcgaactcagcacc 196 |||||||||||||||||||| Sbjct: 2354 ccatcgtcgaactcagcacc 2335
>gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete sequence Length = 104016 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 aacaaacaccacaaagcaaacatt 60 |||||||| ||||||||||||||| Sbjct: 28535 aacaaacatcacaaagcaaacatt 28558
>gb|AY090356.1| Arabidopsis thaliana Length = 1546 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 aacaaacaccacaaagcaaacatt 60 |||||||| ||||||||||||||| Sbjct: 749 aacaaacatcacaaagcaaacatt 726
>gb|AC093811.3| Homo sapiens BAC clone RP11-355H11 from 4, complete sequence Length = 115335 Score = 40.1 bits (20), Expect = 2.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 35 aaaacaaacaccacaaagcaaacattcaaaca 66 |||||||||| ||||||||||||| |||||| Sbjct: 42062 aaaacaaacaaaacaaagcaaacatacaaaca 42031
>gb|AC102282.20| Mus musculus chromosome 5, clone RP24-319P5, complete sequence Length = 175569 Score = 40.1 bits (20), Expect = 2.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 153 tcatcaccctcgtcaccatcctcaccatcgtc 184 |||||||| || |||||||| ||||||||||| Sbjct: 10944 tcatcaccatcatcaccatcatcaccatcgtc 10975
>dbj|AK015296.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930432O09 product:unclassifiable, full insert sequence Length = 1999 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 154 catcaccctcgtcaccatcctcaccatc 181 ||||||| ||||||||||| |||||||| Sbjct: 406 catcaccatcgtcaccatcatcaccatc 433
>emb|BX571757.8| Zebrafish DNA sequence from clone CH211-273J9 in linkage group 16, complete sequence Length = 167101 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 aagcaaacattcaaacagacagat 73 |||||||||||||| ||||||||| Sbjct: 112898 aagcaaacattcaatcagacagat 112921
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 2.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaac 199 ||||||||||| ||||| || || ||||||||| |||||| ||||||| ||||| Sbjct: 29326522 ctctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaac 29326467
>gb|AC079176.15| Homo sapiens X BAC RP11-325D5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186278 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 catcaccctcgtcaccatcctcaccatc 181 ||||||| |||||| ||||||||||||| Sbjct: 66780 catcaccatcgtcatcatcctcaccatc 66753
>gb|AC131212.6| Homo sapiens 12 BAC RP13-554M15 (Rowsell Park Cancer Institute Human BAC Library) complete sequence Length = 160039 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 catcaccctcgtcaccatcctcac 177 ||||||| |||||||||||||||| Sbjct: 28732 catcaccatcgtcaccatcctcac 28709
>emb|BX821055.1|CNS0A9JB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH9ZB03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1457 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 aacaaacaccacaaagcaaacatt 60 |||||||| ||||||||||||||| Sbjct: 725 aacaaacatcacaaagcaaacatt 702
>emb|BX820253.1|CNS0A9LC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH12ZH02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1525 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 aacaaacaccacaaagcaaacatt 60 |||||||| ||||||||||||||| Sbjct: 725 aacaaacatcacaaagcaaacatt 702
>gb|AF182523.1|AF182523 Oryza sativa alpha-tubulin (TubA1) gene, promoter and complete cds Length = 4305 Score = 40.1 bits (20), Expect = 2.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaac 199 ||||||||||| ||||| || || ||||||||| |||||| ||||||| ||||| Sbjct: 3653 ctctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaac 3598
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 ccatcgtcgaactcagcacc 196 |||||||||||||||||||| Sbjct: 4657871 ccatcgtcgaactcagcacc 4657852
>dbj|AK119520.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D01, full insert sequence Length = 1367 Score = 40.1 bits (20), Expect = 2.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaac 199 ||||||||||| ||||| || || ||||||||| |||||| ||||||| ||||| Sbjct: 1129 ctctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaac 1074
>dbj|AK119362.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-G09, full insert sequence Length = 1721 Score = 40.1 bits (20), Expect = 2.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaac 199 ||||||||||| ||||| || || ||||||||| |||||| ||||||| ||||| Sbjct: 1483 ctctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaac 1428
>dbj|AK119247.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C05, full insert sequence Length = 1721 Score = 40.1 bits (20), Expect = 2.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaac 199 ||||||||||| ||||| || || ||||||||| |||||| ||||||| ||||| Sbjct: 1483 ctctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaac 1428
>dbj|AK102194.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087C05, full insert sequence Length = 1745 Score = 40.1 bits (20), Expect = 2.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaac 199 ||||||||||| ||||| || || ||||||||| |||||| ||||||| ||||| Sbjct: 1484 ctctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaac 1429
>gb|AF106571.1|AF106571 Gossypium hirsutum alpha-tubulin (TubA5) mRNA, partial cds Length = 561 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tcagcaccaacttcttcata 208 |||||||||||||||||||| Sbjct: 345 tcagcaccaacttcttcata 326
>gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 of 74 of the complete sequence Length = 341520 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 caccacaaagcaaacattcaaaca 66 |||| ||||||||||||||||||| Sbjct: 298297 caccgcaaagcaaacattcaaaca 298320
>gb|AC135360.3| Mus musculus BAC clone RP24-396P4 from 10, complete sequence Length = 154276 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 catcaccctcgtcaccatcctcaccatc 181 ||||||| ||||||||||| |||||||| Sbjct: 23718 catcaccatcgtcaccatcatcaccatc 23691
>gb|AF030548.1|AF030548 Oryza sativa tubulin (RiP3) mRNA, complete cds Length = 1740 Score = 40.1 bits (20), Expect = 2.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 144 ctctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaac 199 ||||||||||| ||||| || || ||||||||| |||||| ||||||| ||||| Sbjct: 1460 ctctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaac 1405
>gb|U14408.1|ASU14408 Anabaena sp. cell division protein FtsZ (ftsZ) gene and glutathione synthetase, gsh-II, complete cds Length = 3439 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 ccatcgtcgaactcagcacc 196 |||||||||||||||||||| Sbjct: 2799 ccatcgtcgaactcagcacc 2780 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,205,473 Number of Sequences: 3902068 Number of extensions: 2205473 Number of successful extensions: 150533 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 150096 Number of HSP's gapped (non-prelim): 419 length of query: 211 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 189 effective length of database: 17,147,199,772 effective search space: 3240820756908 effective search space used: 3240820756908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
