>PERT_MOUSE (P35419) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)|
          Length = 914

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 185 SCSKKGWSSPGG*R*RWPGQFCRAI-VVVFITAPPCNHGCTCKKEEGRNMKVCT 27
           +C++KGW S            C+ +     +T PPC+    CK  +G    VCT
Sbjct: 769 TCTQKGWDSEP--------PVCKDVNECADLTHPPCHPSAQCKNTKGSFQCVCT 814

>STE50_YEAST (P25344) Protein STE50|
          Length = 346

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 161 KTNPS*NKINTHDIYTTLPDSDKT 232
           KT+ S + INTH + TT+P S+ T
Sbjct: 149 KTSSSSSPINTHGVSTTVPSSNNT 172

>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch|
           1) (Motch A) (mT14) (p300) [Contains: Notch 1
           extracellular truncation; Notch 1 intracellular domain]
          Length = 2531

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 137 WPGQFCRAIVVVFITAPPCNHGCTCKKEEGRNMKVC 30
           W GQ C   +   + +P C HG +C+   G    +C
Sbjct: 861 WQGQTCEVDINECVKSP-CRHGASCQNTNGSYRCLC 895

>PERT_RAT (P14650) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)|
          Length = 914

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -2

Query: 185 SCSKKGWSSPGG*R*RWPGQFCRAI-VVVFITAPPCNHGCTCKKEEGRNMKVCT 27
           +C++ GW S            C+ +     +T PPC+    CK  +G    VCT
Sbjct: 769 TCTQNGWDSEP--------PVCKDVNECADLTHPPCHSSAKCKNTKGSFQCVCT 814

>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch|
           1) [Contains: Notch 1 extracellular truncation; Notch 1
           intracellular domain]
          Length = 2531

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 137 WPGQFCRAIVVVFITAPPCNHGCTCKKEEGRNMKVC 30
           W GQ C   +   + +P C HG +C+   G    +C
Sbjct: 861 WQGQTCEIDINECVKSP-CRHGASCQNTNGSYRCLC 895

>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor|
           (EGF-like domain-containing protein 3) (Multiple
           EGF-like domain protein 3)
          Length = 1574

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 221 SQEVLCRYHEC*SCSKKGWSSPGG*R*RWPGQFCRAIVVVFITAPPCNHGCTCK 60
           S++ LC      SC+ K  S     +  + G+ C+A        P C H CTC+
Sbjct: 655 SEDCLCEQSHTRSCNPKDGSCSC--KAGFQGERCQAECESGFFGPGCRHRCTCQ 706

>LRRC4_HUMAN (Q9HBW1) Leucine-rich repeat-containing protein 4 precursor (Brain|
           tumor-associated protein LRRC4) (NAG14)
          Length = 653

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 19  HLYVHTFIFLPSSFLQVQPWLHGGAVMKTTTMARQNCP 132
           H +    I LP  +L  Q W+   A+    +   QNCP
Sbjct: 10  HHHTWNAILLPFVYLTAQVWILCAAIAAAASAGPQNCP 47

>SLIK3_HUMAN (O94933) SLIT and NTRK-like protein 3 precursor|
          Length = 977

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 139 LHLHPPGEDQPFLEQD 186
           LH+HPPG   P L+QD
Sbjct: 913 LHVHPPGMQYPDLQQD 928

>DLK_HUMAN (P80370) Delta-like protein precursor (DLK) (pG2) [Contains: Fetal|
           antigen 1 (FA1)]
          Length = 383

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 98  ITAPPCNHGCTCKKEEGR 45
           I   PC HG TC  +EGR
Sbjct: 133 INGSPCQHGGTCVDDEGR 150

>SLIK3_MOUSE (Q810B9) SLIT and NTRK-like protein 3 precursor|
          Length = 980

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 139 LHLHPPGEDQPFLEQD 186
           LH+HPPG   P L+QD
Sbjct: 916 LHVHPPGMQYPDLQQD 931


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,190,174
Number of Sequences: 219361
Number of extensions: 775017
Number of successful extensions: 1752
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)