>PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11)
          Length = 308

 Score =  138 bits (348), Expect = 3e-33
 Identities = 69/75 (92%), Positives = 72/75 (96%)
 Frame = -2

Query: 366 LKKFDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSN 187
           L++FD HS+TNEQTVQEMLSLA KYNKAVQEEDELSPEKLAI NVGRQDAKKHLEEHVSN
Sbjct: 230 LRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSN 289

Query: 186 LMSSNIVQTLGTMLD 142
           LMSSNIVQTLGTMLD
Sbjct: 290 LMSSNIVQTLGTMLD 304

>PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (MAD1)
          Length = 310

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 46/75 (61%), Positives = 58/75 (77%)
 Frame = -2

Query: 366 LKKFDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSN 187
           L+ +  H + NE  V+EML LA  YNKAV+EED+++PE+LAI NVG+QD K+HLEEHV  
Sbjct: 231 LQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDV 290

Query: 186 LMSSNIVQTLGTMLD 142
           LM+SNIVQ L  MLD
Sbjct: 291 LMTSNIVQCLAAMLD 305

>PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (26S
           proteasome-associated PAD1 homolog 1)
          Length = 310

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 46/75 (61%), Positives = 58/75 (77%)
 Frame = -2

Query: 366 LKKFDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSN 187
           L+ +  H + NE  V+EML LA  YNKAV+EED+++PE+LAI NVG+QD K+HLEEHV  
Sbjct: 231 LQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDV 290

Query: 186 LMSSNIVQTLGTMLD 142
           LM+SNIVQ L  MLD
Sbjct: 291 LMTSNIVQCLAAMLD 305

>PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (26S proteasome
           regulatory complex subunit p37B) (Yippee-interacting
           protein 5)
          Length = 308

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 41/75 (54%), Positives = 56/75 (74%)
 Frame = -2

Query: 366 LKKFDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSN 187
           L  ++ H   NE TV EML LA  YNK++++E++++PE+LAI NVG+QD K+HLEE V  
Sbjct: 229 LSDYNEHCSINEDTVAEMLDLAKNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDK 288

Query: 186 LMSSNIVQTLGTMLD 142
           +M +NIVQ LG MLD
Sbjct: 289 VMQNNIVQCLGAMLD 303

>RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Protein pad1)|
          Length = 308

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 32/75 (42%), Positives = 47/75 (62%)
 Frame = -2

Query: 366 LKKFDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSN 187
           L+ F++ +E N  ++ +M SL+ +Y + VQ E  LSPE+L I  VG+QD KKHL+  V  
Sbjct: 230 LENFNSAAEKNHASIDKMKSLSEQYTERVQNEVTLSPEQLRIQYVGKQDPKKHLDAEVQK 289

Query: 186 LMSSNIVQTLGTMLD 142
            + +NI   L  MLD
Sbjct: 290 CIDNNISSMLACMLD 304

>PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11)
          Length = 312

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 27/74 (36%), Positives = 50/74 (67%)
 Frame = -2

Query: 366 LKKFDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSN 187
           ++ +    E N++ ++ ML LA  Y KA+++E  ++ ++LAI NVG+ D K+H+ + VS 
Sbjct: 233 VENYSKCGEQNKEHLKAMLKLAKNYKKALEDEKNMTDQELAIKNVGKMDPKRHIADEVSK 292

Query: 186 LMSSNIVQTLGTML 145
           +++ NIVQ+L  M+
Sbjct: 293 MLNDNIVQSLAGMM 306

>RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MPR1 protein)|
          Length = 306

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 26/67 (38%), Positives = 40/67 (59%)
 Frame = -2

Query: 357 FDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMS 178
           ++   E+N    + M+ +A +Y+K ++EE EL+ E+L    VGRQD KKHL E     + 
Sbjct: 230 YEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLE 289

Query: 177 SNIVQTL 157
           +NIV  L
Sbjct: 290 NNIVSVL 296

>RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11|
          Length = 306

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 24/70 (34%), Positives = 40/70 (57%)
 Frame = -2

Query: 366 LKKFDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSN 187
           ++ +      N +  + M+++A +Y+K ++EE ELS E+L    VG+QD KKHL +   N
Sbjct: 227 MQDYQEKETENLEATKRMVAVAQQYSKRIEEEKELSEEELKTRYVGKQDPKKHLAKTAEN 286

Query: 186 LMSSNIVQTL 157
            +  N V  L
Sbjct: 287 TLEENTVSVL 296

>RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11|
          Length = 311

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 22/60 (36%), Positives = 36/60 (60%)
 Frame = -2

Query: 336 NEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL 157
           N +  ++ + +A +Y K ++EE EL+ ++L    VG+QD KKHL E    ++  NIV  L
Sbjct: 242 NLEATKKSVRIAEQYTKRIEEEKELTEDELKTRYVGKQDPKKHLSETAERVLEENIVSVL 301

>RPOC2_GUITH (O78483) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1286

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 79  DRLGESIDGWNNTSGRLKDNRVKHGPQ 159
           +R  + ID WNNTS +LKD  +K+  Q
Sbjct: 100 ERFQKVIDTWNNTSEQLKDEVIKYFKQ 126

>AEGP_RAT (Q63191) Apical endosomal glycoprotein precursor|
          Length = 1216

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 150 WSPGSELCSTTSNSRHALLDASSHLAVQ-H*LSLISQGTTHPPLALPCC 293
           W P  +  + T+   + ++D S +L  + H  SL S+   HPPL+ P C
Sbjct: 846 WGPWIDHTTGTAQGHYMVVDTSPNLLPKGHVASLTSE--EHPPLSRPAC 892

>YFI2_YEAST (P43595) Hypothetical protein YFR012W precursor|
          Length = 202

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 161 PWGPCLTRLSFSLPLV---LFQPSIDSPSLSFMLYVSKACLHAARYIRVLTVCS 9
           P   CLT +SF+LPLV   LFQ    +   +  L  S A LH    +  +  C+
Sbjct: 99  PVATCLTFISFALPLVIIFLFQ----TGGTNVSLITSNAILHILTLLSTIFACT 148

>COG1_DROME (Q9VGC3) Putative conserved oligomeric Golgi complex component 1|
          Length = 886

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = -2

Query: 363 KKFDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNL 184
           K+FD+H       VQE+       N  +QE+   + +K+++    R+ A++ L E++SNL
Sbjct: 477 KRFDSHLA---DIVQEL-------NVMLQEQTTRAEDKVSLIEFLRETAEEQLTEYLSNL 526

>RS7_CLOPE (Q8XHS0) 30S ribosomal protein S7|
          Length = 156

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 13  QTVRTRMYLAAWRQAFDTYNMNDRLGESIDGWNNTSGRLKDNRVKH 150
           QT+  R  LAA R+  + Y      GE +D  NNT   +K     H
Sbjct: 97  QTLGLRWLLAASRKRGEKYMRERLAGELMDAANNTGAAVKKREDTH 142

>PSA4_DROME (P18053) Proteasome subunit alpha type 4 (EC 3.4.25.1) (Proteasome|
           29 kDa subunit) (PROS-Dm29)
          Length = 264

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 366 LKKFDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAK 214
           LK+  A  E  + T+ +   LAIK      +  +L+PEK+ +A + R D K
Sbjct: 175 LKQELADKENVKLTLADAKDLAIKVLSMTLDTTKLTPEKVEMATLQRVDNK 225

>ATG11_CANGA (Q6FRH2) Autophagy-related protein 11|
          Length = 1110

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 19/82 (23%)
 Frame = -2

Query: 333  EQTVQEMLSLAIKYNKAVQEEDELSPEKLAIAN---VGRQ--------------DAKKHL 205
            E +  E L +  KY K ++E+DE   +  A+ N    G Q              +A  HL
Sbjct: 781  EDSANEKLEIKSKYEKLIKEKDENMGQAFAVTNKAISGEQNKTESDIIHSSPYPEAILHL 840

Query: 204  EEHVSNLMSSN--IVQTLGTML 145
               + ++ S+N  I++ +G +L
Sbjct: 841  RTELFDIFSTNIYILENIGLLL 862

>CL190_DROME (Q9VJE5) Restin homolog (Cytoplasmic linker protein 190)|
            (Microtubule-binding protein 190) (d-CLIP-190)
          Length = 1690

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
 Frame = -2

Query: 330  QTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVG---RQDAKKHLEEHVSNL-----MSS 175
            + ++E L  A +  + +Q+E + S EKL          QD+ K  EE V NL      SS
Sbjct: 1192 EELEEKLKQAQQSEQKLQQESQTSKEKLTEIQQSLQELQDSVKQKEELVQNLEEKVRESS 1251

Query: 174  NIVQTLGTMLD 142
            +I++   T L+
Sbjct: 1252 SIIEAQNTKLN 1262

>SGF29_YEAST (P25554) SAGA-associated factor 29 (29 kDa SAGA-associated factor)|
           (SAGA histone acetyltransferase complex 29 kDa subunit)
          Length = 259

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
 Frame = -2

Query: 291 NKAVQEEDELSPEKLAIANVGRQDAKKHL---EEHVSNL-----MSSNIVQTLGTMLD 142
           N+ +  +DEL  +KL   N+ +   + HL   +EH+ N+     +  N+   L  ML+
Sbjct: 19  NEVIPFDDELQTKKLNFLNMSKDQLQLHLNTFQEHMENVNRVHRILDNVRSNLSLMLN 76

>TRHY_HUMAN (Q07283) Trichohyalin|
          Length = 1898

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 363  KKFDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEK 250
            +KF    +  ++T QE L    +Y K + EE++L PE+
Sbjct: 1678 RKFREEEQLRQETEQEQLRRQERYRK-ILEEEQLRPER 1714

>AKIB1_MOUSE (Q6ZPS6) Ankyrin repeat and IBR domain-containing protein 1|
           (Fragment)
          Length = 1087

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 186 NSRHALLDASSHLAVQH*LSLISQGTTHPPLALP 287
           N R+   + S HL       +IS+GT HP LA P
Sbjct: 76  NKRNVHNETSMHLLCMGPQIMISEGTLHPRLARP 109

>RPOC2_ANASP (P22705) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1355

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 79  DRLGESIDGWNNTSGRLKDNRVKHGPQ 159
           +R  + ID WN TS  LKD  V H  Q
Sbjct: 94  ERFQKVIDTWNGTSEALKDEVVTHFKQ 120

>EMAL4_HUMAN (Q9HC35) Echinoderm microtubule-associated protein-like 4 (EMAP-4)|
           (Restrictedly overexpressed proliferation-associated
           protein) (Ropp 120)
          Length = 981

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/60 (33%), Positives = 35/60 (58%)
 Frame = -2

Query: 354 DAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSS 175
           D+ S  +   VQ+ LS     ++  Q+EDE++  K A+A+V R+ A    E+HV+++  S
Sbjct: 10  DSISAASTSDVQDRLSAL--ESRVQQQEDEITVLKAALADVLRRLAIS--EDHVASVKKS 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,388,125
Number of Sequences: 219361
Number of extensions: 872562
Number of successful extensions: 2514
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2514
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)