Clone Name | rbart50b03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK099455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022M19, full insert sequence Length = 1220 Score = 250 bits (126), Expect = 3e-63 Identities = 195/218 (89%) Strand = Plus / Minus Query: 124 agactaaaagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacat 183 |||||| || ||||||||||| |||||||| || ||||||||||||||||| |||||||| Sbjct: 1013 agactagaacacaaccgtgtcgagcatggttcctagggtctgaactatgtttgacgacat 954 Query: 184 caaattcgagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctat 243 |||||| |||||||||||||| | |||||||| ||||| |||||||| ||||| || || Sbjct: 953 caaatttgagacatgctcttccaagtgcttcttggcatcctgccgtcccacattggcaat 894 Query: 244 cgctaatttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggc 303 ||||| ||||||||| | || |||||||||||| |||||||||||||| || |||||||| Sbjct: 893 cgctagtttctcaggtggcagctcatcctcctcctgcactgccttgttatatttgatggc 834 Query: 304 taggctcagcatttcctgaacagtctgctcattggttt 341 |||| ||||||||||||||||||||||||||||||||| Sbjct: 833 taggttcagcatttcctgaacagtctgctcattggttt 796
>dbj|AB037152.1| Oryza sativa (japonica cultivar-group) OsRPN11 mRNA for 26S proteasome regulatory particle non-ATPase subunit11, complete cds Length = 1129 Score = 250 bits (126), Expect = 3e-63 Identities = 195/218 (89%) Strand = Plus / Minus Query: 124 agactaaaagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacat 183 |||||| || ||||||||||| |||||||| || ||||||||||||||||| |||||||| Sbjct: 966 agactagaacacaaccgtgtcgagcatggttcctagggtctgaactatgtttgacgacat 907 Query: 184 caaattcgagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctat 243 |||||| |||||||||||||| | |||||||| ||||| |||||||| ||||| || || Sbjct: 906 caaatttgagacatgctcttccaagtgcttcttggcatcctgccgtcccacattggcaat 847 Query: 244 cgctaatttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggc 303 ||||| ||||||||| | || |||||||||||| |||||||||||||| || |||||||| Sbjct: 846 cgctagtttctcaggtggcagctcatcctcctcctgcactgccttgttatatttgatggc 787 Query: 304 taggctcagcatttcctgaacagtctgctcattggttt 341 |||| ||||||||||||||||||||||||||||||||| Sbjct: 786 taggttcagcatttcctgaacagtctgctcattggttt 749
>dbj|AK109403.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-D04, full insert sequence Length = 1212 Score = 248 bits (125), Expect = 1e-62 Identities = 212/241 (87%) Strand = Plus / Minus Query: 127 ctaaaagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaa 186 |||||| ||||| || || |||||||| || || |||||||||||||| || |||||||| Sbjct: 1004 ctaaaatacaactgtatcgagcatggttcctagcgtctgaactatgtttgatgacatcaa 945 Query: 187 attcgagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgc 246 ||| |||||||||||||| | |||||||| |||||||||||||| ||||| |||||||| Sbjct: 944 attggagacatgctcttccaagtgcttcttagcatcttgccgtcccacatttgctatcgc 885 Query: 247 taatttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggctag 306 |||||||||||| | || |||||||||||||||||| ||||||||||||||||| || || Sbjct: 884 taatttctcaggcggcagctcatcctcctcttgcaccgccttgttgtacttgatagcaag 825 Query: 307 gctcagcatttcctgaacagtctgctcattggtttctgaatgtgcgtcaaatttcttcag 366 | ||||||||||||||||||||||||||||||| | |||||| | |||||| ||||||| Sbjct: 824 gttcagcatttcctgaacagtctgctcattggtctttgaatgagtgtcaaacctcttcag 765 Query: 367 a 367 | Sbjct: 764 a 764
>dbj|AK112020.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B06, full insert sequence Length = 1142 Score = 248 bits (125), Expect = 1e-62 Identities = 212/241 (87%) Strand = Plus / Minus Query: 127 ctaaaagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaa 186 |||||| ||||| || || |||||||| || || |||||||||||||| || |||||||| Sbjct: 1002 ctaaaatacaactgtatcgagcatggttcctagcgtctgaactatgtttgatgacatcaa 943 Query: 187 attcgagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgc 246 ||| |||||||||||||| | |||||||| |||||||||||||| ||||| |||||||| Sbjct: 942 attggagacatgctcttccaagtgcttcttagcatcttgccgtcccacatttgctatcgc 883 Query: 247 taatttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggctag 306 |||||||||||| | || |||||||||||||||||| ||||||||||||||||| || || Sbjct: 882 taatttctcaggcggcagctcatcctcctcttgcaccgccttgttgtacttgatagcaag 823 Query: 307 gctcagcatttcctgaacagtctgctcattggtttctgaatgtgcgtcaaatttcttcag 366 | ||||||||||||||||||||||||||||||| | |||||| | |||||| ||||||| Sbjct: 822 gttcagcatttcctgaacagtctgctcattggtctttgaatgagtgtcaaacctcttcag 763 Query: 367 a 367 | Sbjct: 762 a 762
>dbj|AK111763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062E06, full insert sequence Length = 1115 Score = 248 bits (125), Expect = 1e-62 Identities = 212/241 (87%) Strand = Plus / Minus Query: 127 ctaaaagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaa 186 |||||| ||||| || || |||||||| || || |||||||||||||| || |||||||| Sbjct: 1001 ctaaaatacaactgtatcgagcatggttcctagcgtctgaactatgtttgatgacatcaa 942 Query: 187 attcgagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgc 246 ||| |||||||||||||| | |||||||| |||||||||||||| ||||| |||||||| Sbjct: 941 attggagacatgctcttccaagtgcttcttagcatcttgccgtcccacatttgctatcgc 882 Query: 247 taatttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggctag 306 |||||||||||| | || |||||||||||||||||| ||||||||||||||||| || || Sbjct: 881 taatttctcaggcggcagctcatcctcctcttgcaccgccttgttgtacttgatagcaag 822 Query: 307 gctcagcatttcctgaacagtctgctcattggtttctgaatgtgcgtcaaatttcttcag 366 | ||||||||||||||||||||||||||||||| | |||||| | |||||| ||||||| Sbjct: 821 gttcagcatttcctgaacagtctgctcattggtctttgaatgagtgtcaaacctcttcag 762 Query: 367 a 367 | Sbjct: 761 a 761
>ref|NM_188020.1| Oryza sativa (japonica cultivar-group), Ozsa8440 predicted mRNA Length = 924 Score = 246 bits (124), Expect = 4e-62 Identities = 187/208 (89%) Strand = Plus / Minus Query: 134 acaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattcgag 193 ||||||||||| |||||||| || ||||||||||||||||| |||||||||||||| ||| Sbjct: 917 acaaccgtgtcgagcatggttcctagggtctgaactatgtttgacgacatcaaatttgag 858 Query: 194 acatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaatttc 253 ||||||||||| | |||||||| ||||| |||||||| ||||| || ||||||| |||| Sbjct: 857 acatgctcttccaagtgcttcttggcatcctgccgtcccacattggcaatcgctagtttc 798 Query: 254 tcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggctaggctcagc 313 ||||| | || |||||||||||| |||||||||||||| || |||||||||||| ||||| Sbjct: 797 tcaggtggcagctcatcctcctcctgcactgccttgttatatttgatggctaggttcagc 738 Query: 314 atttcctgaacagtctgctcattggttt 341 |||||||||||||||||||||||||||| Sbjct: 737 atttcctgaacagtctgctcattggttt 710
>gb|BT009132.1| Triticum aestivum clone wl1n.pk0036.c3:fis, full insert mRNA sequence Length = 1318 Score = 240 bits (121), Expect = 3e-60 Identities = 205/233 (87%) Strand = Plus / Minus Query: 109 aacaacactagtggtagactaaaagacaaccgtgtcaagcatggtccccagggtctgaac 168 ||||| |||| | ||||||||||||||||||||||| |||||||| || ||||||||||| Sbjct: 1034 aacaatactattagtagactaaaagacaaccgtgtcgagcatggttcctagggtctgaac 975 Query: 169 tatgttcgacgacatcaaattcgagacatgctcttctagatgcttcttcgcatcttgccg 228 |||||| || |||||||||||||| ||||||||||| | |||||| || ||||||||||| Sbjct: 974 tatgtttgatgacatcaaattcgacacatgctcttccaaatgcttttttgcatcttgccg 915 Query: 229 tccaacattagctatcgctaatttctcaggggacaactcatcctcctcttgcactgcctt 288 || ||||| |||||||| | ||||||||| | || || |||||||| ||||||||||| Sbjct: 914 acccacatttgctatcgcaagtttctcaggaggcagttcgtcctcctcctgcactgcctt 855 Query: 289 gttgtacttgatggctaggctcagcatttcctgaacagtctgctcattggttt 341 ||||||||||||||||||| | ||||||||||| ||||||||||| ||||||| Sbjct: 854 gttgtacttgatggctaggtttagcatttcctggacagtctgctcgttggttt 802
>gb|AY104261.1| Zea mays PCO099067 mRNA sequence Length = 1282 Score = 240 bits (121), Expect = 3e-60 Identities = 205/233 (87%) Strand = Plus / Minus Query: 109 aacaacactagtggtagactaaaagacaaccgtgtcaagcatggtccccagggtctgaac 168 ||||| |||| | ||||||||||||||||||||||| |||||||| || ||||||||||| Sbjct: 1010 aacaatactattagtagactaaaagacaaccgtgtcgagcatggttcctagggtctgaac 951 Query: 169 tatgttcgacgacatcaaattcgagacatgctcttctagatgcttcttcgcatcttgccg 228 |||||| || |||||||||||||| ||||||||||| | |||||| || ||||||||||| Sbjct: 950 tatgtttgatgacatcaaattcgacacatgctcttccaaatgcttttttgcatcttgccg 891 Query: 229 tccaacattagctatcgctaatttctcaggggacaactcatcctcctcttgcactgcctt 288 || ||||| |||||||| | ||||||||| | || || |||||||| ||||||||||| Sbjct: 890 acccacatttgctatcgcaagtttctcaggaggcagttcgtcctcctcctgcactgcctt 831 Query: 289 gttgtacttgatggctaggctcagcatttcctgaacagtctgctcattggttt 341 ||||||||||||||||||| | ||||||||||| ||||||||||| ||||||| Sbjct: 830 gttgtacttgatggctaggtttagcatttcctggacagtctgctcgttggttt 778
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 210 bits (106), Expect = 2e-51 Identities = 175/198 (88%) Strand = Plus / Minus Query: 124 agactaaaagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacat 183 |||||| || ||||||||||| |||||||| || ||||||||||||||||| |||||||| Sbjct: 9168660 agactagaacacaaccgtgtcgagcatggttcctagggtctgaactatgtttgacgacat 9168601 Query: 184 caaattcgagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctat 243 |||||| |||||||||||||| | |||||||| ||||| |||||||| ||||| || || Sbjct: 9168600 caaatttgagacatgctcttccaagtgcttcttggcatcctgccgtcccacattggcaat 9168541 Query: 244 cgctaatttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggc 303 ||||| ||||||||| | || |||||||||||| |||||||||||||| || |||||||| Sbjct: 9168540 cgctagtttctcaggtggcagctcatcctcctcctgcactgccttgttatatttgatggc 9168481 Query: 304 taggctcagcatttcctg 321 |||| ||||||||||||| Sbjct: 9168480 taggttcagcatttcctg 9168463 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 318 cctgaacagtctgctcattggttt 341 |||||||||||||||||||||||| Sbjct: 9168342 cctgaacagtctgctcattggttt 9168319
>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0011D01 Length = 168655 Score = 210 bits (106), Expect = 2e-51 Identities = 175/198 (88%) Strand = Plus / Minus Query: 124 agactaaaagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacat 183 |||||| || ||||||||||| |||||||| || ||||||||||||||||| |||||||| Sbjct: 69042 agactagaacacaaccgtgtcgagcatggttcctagggtctgaactatgtttgacgacat 68983 Query: 184 caaattcgagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctat 243 |||||| |||||||||||||| | |||||||| ||||| |||||||| ||||| || || Sbjct: 68982 caaatttgagacatgctcttccaagtgcttcttggcatcctgccgtcccacattggcaat 68923 Query: 244 cgctaatttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggc 303 ||||| ||||||||| | || |||||||||||| |||||||||||||| || |||||||| Sbjct: 68922 cgctagtttctcaggtggcagctcatcctcctcctgcactgccttgttatatttgatggc 68863 Query: 304 taggctcagcatttcctg 321 |||| ||||||||||||| Sbjct: 68862 taggttcagcatttcctg 68845 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 318 cctgaacagtctgctcattggttt 341 |||||||||||||||||||||||| Sbjct: 68724 cctgaacagtctgctcattggttt 68701
>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06, complete sequence Length = 136143 Score = 204 bits (103), Expect = 1e-49 Identities = 172/195 (88%) Strand = Plus / Minus Query: 127 ctaaaagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaa 186 |||||| ||||| || || |||||||| || || |||||||||||||| || |||||||| Sbjct: 105977 ctaaaatacaactgtatcgagcatggttcctagcgtctgaactatgtttgatgacatcaa 105918 Query: 187 attcgagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgc 246 ||| |||||||||||||| | |||||||| |||||||||||||| ||||| |||||||| Sbjct: 105917 attggagacatgctcttccaagtgcttcttagcatcttgccgtcccacatttgctatcgc 105858 Query: 247 taatttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggctag 306 |||||||||||| | || |||||||||||||||||| ||||||||||||||||| || || Sbjct: 105857 taatttctcaggcggcagctcatcctcctcttgcaccgccttgttgtacttgatagcaag 105798 Query: 307 gctcagcatttcctg 321 | ||||||||||||| Sbjct: 105797 gttcagcatttcctg 105783 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 318 cctgaacagtctgctcattggtttctgaatgtgcgtcaaatttcttcaga 367 |||||||||||||||||||||| | |||||| | |||||| |||||||| Sbjct: 105689 cctgaacagtctgctcattggtctttgaatgagtgtcaaacctcttcaga 105640
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 204 bits (103), Expect = 1e-49 Identities = 172/195 (88%) Strand = Plus / Minus Query: 127 ctaaaagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaa 186 |||||| ||||| || || |||||||| || || |||||||||||||| || |||||||| Sbjct: 17729219 ctaaaatacaactgtatcgagcatggttcctagcgtctgaactatgtttgatgacatcaa 17729160 Query: 187 attcgagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgc 246 ||| |||||||||||||| | |||||||| |||||||||||||| ||||| |||||||| Sbjct: 17729159 attggagacatgctcttccaagtgcttcttagcatcttgccgtcccacatttgctatcgc 17729100 Query: 247 taatttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggctag 306 |||||||||||| | || |||||||||||||||||| ||||||||||||||||| || || Sbjct: 17729099 taatttctcaggcggcagctcatcctcctcttgcaccgccttgttgtacttgatagcaag 17729040 Query: 307 gctcagcatttcctg 321 | ||||||||||||| Sbjct: 17729039 gttcagcatttcctg 17729025 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 318 cctgaacagtctgctcattggtttctgaatgtgcgtcaaatttcttcaga 367 |||||||||||||||||||||| | |||||| | |||||| |||||||| Sbjct: 17728931 cctgaacagtctgctcattggtctttgaatgagtgtcaaacctcttcaga 17728882
>gb|BT018364.1| Zea mays clone EL01N0311E01.c mRNA sequence Length = 603 Score = 188 bits (95), Expect = 9e-45 Identities = 189/219 (86%), Gaps = 1/219 (0%) Strand = Plus / Minus Query: 124 agactaaaagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacat 183 ||||||||| ||||||||||| |||||||| || ||||||||||||||||| || ||||| Sbjct: 470 agactaaaatacaaccgtgtcgagcatggttcctagggtctgaactatgtttgatgacat 411 Query: 184 caaattcgagacatgctcttctagatgcttcttcgcatctt-gccgtccaacattagcta 242 |||||| || ||||||||||| | |||||| || |||||| |||| || ||||| |||| Sbjct: 410 caaattggacacatgctcttccaaatgcttttttgcatctccgccgacccacatttgcta 351 Query: 243 tcgctaatttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatgg 302 | || | ||||||||| | || || |||||||| ||||||||||||||||||||||||| Sbjct: 350 tagcaagtttctcaggtggcagttcgtcctcctcctgcactgccttgttgtacttgatgg 291 Query: 303 ctaggctcagcatttcctgaacagtctgctcattggttt 341 ||||| | ||||||||||| ||||||||||| ||||||| Sbjct: 290 ctaggtttagcatttcctggacagtctgctcgttggttt 252
>emb|AM260494.1| Platanus acerifolia partial mRNA for 26S proteasome subunit 11 (26S-11 gene) Length = 846 Score = 137 bits (69), Expect = 3e-29 Identities = 180/217 (82%) Strand = Plus / Minus Query: 134 acaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattcgag 193 ||||| ||||| | |||||| |||| |||||||||||||| || |||||||| || ||| Sbjct: 687 acaactgtgtctaacatggtgcccaaagtctgaactatgtttgatgacatcaagttagag 628 Query: 194 acatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaatttc 253 ||||| ||||| | ||||||||| |||||||||| || || || || || || | ||| Sbjct: 627 acatgttcttccaaatgcttcttagcatcttgcctgcccacgtttgcaattgccagcttc 568 Query: 254 tcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggctaggctcagc 313 ||||| | |||||||||||| || || |||||||||||||| ||||||||||| |||||| Sbjct: 567 tcaggtggcaactcatcctcttcctgaactgccttgttgtatttgatggctagactcagc 508 Query: 314 atttcctgaacagtctgctcattggtttctgaatgtg 350 || ||||||||||| || ||||| |||| ||||||| Sbjct: 507 atctcctgaacagtttgttcatttgttttggaatgtg 471
>gb|AC140547.18| Medicago truncatula clone mth2-17p16, complete sequence Length = 123189 Score = 123 bits (62), Expect = 4e-25 Identities = 158/190 (83%) Strand = Plus / Minus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||||||| || |||||||| | || || || ||||| ||||| || ||||||||||| Sbjct: 49666 aagacaacagtatcaagcatcattccaagagtttgaacgatgttagaagacatcaaattt 49607 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||||||||| || |||||||| |||||||| | ||||||||| ||||| || | | Sbjct: 49606 gagacatgctcttcgaggtgcttcttggcatcttgtcttccaacatttgctattgcaagt 49547 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggctaggctc 310 |||||||| | || |||||| |||||||| || ||||||||||| ||| | |||| ||| Sbjct: 49546 ttctcaggtgtcagctcatcttcctcttgaacagccttgttgtatttggtagctaagctt 49487 Query: 311 agcatttcct 320 |||||||||| Sbjct: 49486 agcatttcct 49477
>gb|AC145022.28| Medicago truncatula clone mth2-8m24, complete sequence Length = 108548 Score = 123 bits (62), Expect = 4e-25 Identities = 158/190 (83%) Strand = Plus / Minus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||||||| || |||||||| | || || || ||||| ||||| || ||||||||||| Sbjct: 8449 aagacaacagtatcaagcatcattccaagagtttgaacgatgttagaagacatcaaattt 8390 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||||||||| || |||||||| |||||||| | ||||||||| ||||| || | | Sbjct: 8389 gagacatgctcttcgaggtgcttcttggcatcttgtcttccaacatttgctattgcaagt 8330 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggctaggctc 310 |||||||| | || |||||| |||||||| || ||||||||||| ||| | |||| ||| Sbjct: 8329 ttctcaggtgtcagctcatcttcctcttgaacagccttgttgtatttggtagctaagctt 8270 Query: 311 agcatttcct 320 |||||||||| Sbjct: 8269 agcatttcct 8260
>dbj|AP006080.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT48M22, TM0118c, complete sequence Length = 91116 Score = 107 bits (54), Expect = 3e-20 Identities = 156/190 (82%) Strand = Plus / Plus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||||||| || |||||||| | || || || ||||| ||||| || |||||||| || Sbjct: 67283 aagacaacagtatcaagcatcattccaagagtttgaacgatgttggaagacatcaagttt 67342 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||||||||| || |||||||| |||||||| | ||| ||||| ||||| || | Sbjct: 67343 gagacatgctcttcaaggtgcttcttggcatcttgtcttcccacatttgctattgcaagc 67402 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggctaggctc 310 ||||||||||| | |||||| |||||||| || ||||||||||| |||| |||| ||| Sbjct: 67403 ttctcaggggaaagctcatcttcctcttggacagccttgttgtatttgacagctaaactc 67462 Query: 311 agcatttcct 320 |||||||||| Sbjct: 67463 agcatttcct 67472 Score = 40.1 bits (20), Expect = 4.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 318 cctgaacagtctgctcattggtttctgaatgtgcgtcaaa 357 ||||||||||||| ||||| |||| ||||||| |||||| Sbjct: 67638 cctgaacagtctgttcattagttttggaatgtgtgtcaaa 67677
>gb|BT013130.1| Lycopersicon esculentum clone 114422R, mRNA sequence Length = 1181 Score = 93.7 bits (47), Expect = 4e-16 Identities = 170/211 (80%) Strand = Plus / Minus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||| ||| ||||| |||||||| |||| ||||| || ||||| || |||||||||| Sbjct: 1000 aagataacagtgtcgagcatggttcccaatgtctggacaatgtttgaagacatcaaatca 941 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||| ||||| ||||||||||| |||||||||| ||| ||||| || || |||| Sbjct: 940 gagacatgttcttcaagatgcttctttgcatcttgccttcctacatttgcaatagctagc 881 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgttgtacttgatggctaggctc 310 || || |||| |||||||||||| | |||||||| || || |||||| || || | Sbjct: 880 ttttctggggtcaactcatcctcttgctgcactgctttattatacttgccagcaagattt 821 Query: 311 agcatttcctgaacagtctgctcattggttt 341 | ||| |||||||| |||||||||||||||| Sbjct: 820 aacatctcctgaactgtctgctcattggttt 790
>ref|NM_122261.2| Arabidopsis thaliana unknown protein AT5G23540 mRNA, complete cds Length = 1266 Score = 81.8 bits (41), Expect = 1e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||||||| ||||| ||||| || || || |||||||| ||||| || ||||| | ||| Sbjct: 1026 aagacaacagtgtcgagcatagtgcctagtgtctgaacaatgttggatgacatgaggttc 967 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||| ||||| ||||||||||| |||||||| | ||| ||||| | || || | Sbjct: 966 gagacatgttcttccagatgcttctttgcatcttgtcttcccacattcacaattgccagc 907 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgtt 291 ||||| || |||||||| ||||||||||| || |||||||| Sbjct: 906 ttctctggtgacaactcgtcctcctcttgaaccgccttgtt 866
>gb|AY230845.1| Arabidopsis thaliana 26S proteasome subunit RPN11 (RPN11) mRNA, RPN11-2 allele, complete cds Length = 1199 Score = 81.8 bits (41), Expect = 1e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||||||| ||||| ||||| || || || |||||||| ||||| || ||||| | ||| Sbjct: 989 aagacaacagtgtcgagcatagtgcctagtgtctgaacaatgttggatgacatgaggttc 930 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||| ||||| ||||||||||| |||||||| | ||| ||||| | || || | Sbjct: 929 gagacatgttcttccagatgcttctttgcatcttgtcttcccacattcacaattgccagc 870 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgtt 291 ||||| || |||||||| ||||||||||| || |||||||| Sbjct: 869 ttctctggtgacaactcgtcctcctcttgaaccgccttgtt 829
>gb|AY230844.1| Arabidopsis thaliana 26S proteasome subunit RPN11a (RPN11a) mRNA, RPN11a-1 allele, complete cds Length = 1163 Score = 81.8 bits (41), Expect = 1e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||||||| ||||| ||||| || || || |||||||| ||||| || ||||| | ||| Sbjct: 980 aagacaacagtgtcgagcatagtgcctagtgtctgaacaatgttggatgacatgaggttc 921 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||| ||||| ||||||||||| |||||||| | ||| ||||| | || || | Sbjct: 920 gagacatgttcttccagatgcttctttgcatcttgtcttcccacattcacaattgccagc 861 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgtt 291 ||||| || |||||||| ||||||||||| || |||||||| Sbjct: 860 ttctctggtgacaactcgtcctcctcttgaaccgccttgtt 820
>gb|AY230843.1| Arabidopsis thaliana 26S proteasome subunit RPN11A (RPN11a) mRNA, RPN11a-1 allele, complete cds Length = 1235 Score = 81.8 bits (41), Expect = 1e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||||||| ||||| ||||| || || || |||||||| ||||| || ||||| | ||| Sbjct: 1013 aagacaacagtgtcgagcatagtgcctagtgtctgaacaatgttggatgacatgaggttc 954 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||| ||||| ||||||||||| |||||||| | ||| ||||| | || || | Sbjct: 953 gagacatgttcttccagatgcttctttgcatcttgtcttcccacattcacaattgccagc 894 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgtt 291 ||||| || |||||||| ||||||||||| || |||||||| Sbjct: 893 ttctctggtgacaactcgtcctcctcttgaaccgccttgtt 853
>gb|AY091329.1| Arabidopsis thaliana putative 26S proteasome, non-ATPase regulatory subunit (At5g23540) mRNA, complete cds Length = 958 Score = 81.8 bits (41), Expect = 1e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||||||| ||||| ||||| || || || |||||||| ||||| || ||||| | ||| Sbjct: 923 aagacaacagtgtcgagcatagtgcctagtgtctgaacaatgttggatgacatgaggttc 864 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||| ||||| ||||||||||| |||||||| | ||| ||||| | || || | Sbjct: 863 gagacatgttcttccagatgcttctttgcatcttgtcttcccacattcacaattgccagc 804 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgtt 291 ||||| || |||||||| ||||||||||| || |||||||| Sbjct: 803 ttctctggtgacaactcgtcctcctcttgaaccgccttgtt 763
>gb|AY070073.1| Arabidopsis thaliana putative 26S proteasome, non-ATPase regulatory subunit (At5g23540) mRNA, complete cds Length = 1227 Score = 81.8 bits (41), Expect = 1e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||||||| ||||| ||||| || || || |||||||| ||||| || ||||| | ||| Sbjct: 969 aagacaacagtgtcgagcatagtgcctagtgtctgaacaatgttggatgacatgaggttc 910 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||| ||||| ||||||||||| |||||||| | ||| ||||| | || || | Sbjct: 909 gagacatgttcttccagatgcttctttgcatcttgtcttcccacattcacaattgccagc 850 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgtt 291 ||||| || |||||||| ||||||||||| || |||||||| Sbjct: 849 ttctctggtgacaactcgtcctcctcttgaaccgccttgtt 809
>emb|BX829732.1|CNS0A1XY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB31ZG05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 348 Score = 81.8 bits (41), Expect = 1e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||||||| ||||| ||||| || || || |||||||| ||||| || ||||| | ||| Sbjct: 191 aagacaacagtgtcgagcatagtgcctagtgtctgaacaatgttggatgacatgaggttc 132 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||| ||||| ||||||||||| |||||||| | ||| ||||| | || || | Sbjct: 131 gagacatgttcttccagatgcttctttgcatcttgtcttcccacattcacaattgccagc 72 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgtt 291 ||||| || |||||||| ||||||||||| || |||||||| Sbjct: 71 ttctctggtgacaactcgtcctcctcttgaaccgccttgtt 31
>gb|AY086277.1| Arabidopsis thaliana clone 23276 mRNA, complete sequence Length = 1185 Score = 81.8 bits (41), Expect = 1e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||||||| ||||| ||||| || || || |||||||| ||||| || ||||| | ||| Sbjct: 1029 aagacaacagtgtcgagcatagtgcctagtgtctgaacaatgttggatgacatgaggttc 970 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||| ||||| ||||||||||| |||||||| | ||| ||||| | || || | Sbjct: 969 gagacatgttcttccagatgcttctttgcatcttgtcttcccacattcacaattgccagc 910 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgtt 291 ||||| || |||||||| ||||||||||| || |||||||| Sbjct: 909 ttctctggtgacaactcgtcctcctcttgaaccgccttgtt 869
>dbj|AB025633.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQM1 Length = 81365 Score = 81.8 bits (41), Expect = 1e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 131 aagacaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacatcaaattc 190 |||||||| ||||| ||||| || || || |||||||| ||||| || ||||| | ||| Sbjct: 18386 aagacaacagtgtcgagcatagtgcctagtgtctgaacaatgttggatgacatgaggttc 18327 Query: 191 gagacatgctcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaat 250 |||||||| ||||| ||||||||||| |||||||| | ||| ||||| | || || | Sbjct: 18326 gagacatgttcttccagatgcttctttgcatcttgtcttcccacattcacaattgccagc 18267 Query: 251 ttctcaggggacaactcatcctcctcttgcactgccttgtt 291 ||||| || |||||||| ||||||||||| || |||||||| Sbjct: 18266 ttctctggtgacaactcgtcctcctcttgaaccgccttgtt 18226
>gb|AC000098.1|YUP8H12 Arabidopsis thaliana chromosome 1 YAC yUP8H12 complete sequence Length = 103576 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 134 acaaccgtgtcaagcatggtccccagggtctgaactatgttcgacgacat 183 |||||||||||||||||||| || | |||||||||||||| || ||||| Sbjct: 50675 acaaccgtgtcaagcatggtgcctaatgtctgaactatgtttgatgacat 50626
>emb|BX830953.1|CNS09YRU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS41ZB02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 898 Score = 48.1 bits (24), Expect = 0.020 Identities = 75/92 (81%) Strand = Plus / Minus Query: 200 tcttctagatgcttcttcgcatcttgccgtccaacattagctatcgctaatttctcaggg 259 ||||| ||||||||||| |||||||| | ||| ||||| | || || | ||||| || Sbjct: 894 tcttccagatgcttctttgcatcttgtcttcccacattcacaattgccagcttctctggt 835 Query: 260 gacaactcatcctcctcttgcactgccttgtt 291 |||||||| ||||||||||| || |||||||| Sbjct: 834 gacaactcgtcctcctcttgaaccgccttgtt 803
>gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16 genomic sequence, complete sequence Length = 100239 Score = 46.1 bits (23), Expect = 0.079 Identities = 35/39 (89%) Strand = Plus / Minus Query: 134 acaaccgtgtcaagcatggtccccagggtctgaactatg 172 |||||||||||||||||||| || | |||||||||||| Sbjct: 49763 acaaccgtgtcaagcatggtgcctaatgtctgaactatg 49725
>ref|XM_948501.1| Theileria annulata strain Ankara hypothetical protein (TA09560) partial mRNA Length = 10182 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 catataacatgaatgataga 84 |||||||||||||||||||| Sbjct: 8846 catataacatgaatgataga 8865
>gb|AY792583.1| Potamophila parviflora alcohol dehydrogenase II (Adh2) gene, exons 4 through 7 and partial cds Length = 1143 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 cctcttgcactgccttgttgtact 296 |||||||||||| ||||||||||| Sbjct: 1071 cctcttgcactggcttgttgtact 1048 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,782,200 Number of Sequences: 3902068 Number of extensions: 2782200 Number of successful extensions: 107501 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107421 Number of HSP's gapped (non-prelim): 69 length of query: 367 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 345 effective length of database: 17,147,199,772 effective search space: 5915783921340 effective search space used: 5915783921340 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)