ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb) 37 0.012
2CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin) 35 0.036
3METK_STRA5 (Q8E0A3) S-adenosylmethionine synthetase (EC 2.5.1.6)... 28 7.5
4METK_STRA3 (Q8E5Y0) S-adenosylmethionine synthetase (EC 2.5.1.6)... 28 7.5
5QUEF_ERWCT (Q6D8F4) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-) 28 7.5
6DSPP_MOUSE (P97399) Dentin sialophosphoprotein precursor (Dentin... 27 9.8
7CADH1_CHICK (P08641) Epithelial-cadherin precursor (E-cadherin) ... 27 9.8
8BTBD4_HUMAN (Q86UZ6) BTB/POZ domain-containing protein 4 (Zinc f... 27 9.8

>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)|
          Length = 2567

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = -1

Query: 309 EPTGERVQVH*PEAQGPGDGVRAGAAEYIRDGEEP 205
           EP G+  Q   P+AQGPG+GVR G AE  ++G EP
Sbjct: 257 EPQGKDRQGTRPQAQGPGEGVRPGKAE--KEGAEP 289



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>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 35.4 bits (80), Expect = 0.036
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 318 GRGEPTGERVQVH*PEAQG--PGDGVRAGAAEYIRDGEEPPGERDAAGATTK*RRPRQ 151
           G  +P  E V+V   E +G  PG+ V   AAE      EP G  DAAG      RP++
Sbjct: 264 GSPQPRSEAVEVAAAENEGHSPGESVEDAAAEEAAGTREPEGSEDAAGEDGDQGRPQE 321



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>METK_STRA5 (Q8E0A3) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase) (MAT)
          Length = 398

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = +3

Query: 75  STAHPYEKYLIT*QLSGLHDELLMHVVSDVVTWW*HRQHPFLLEALHRLVYTLQH----- 239
           S AH   K L   + SG    L     S V   +     P  ++A+   V + QH     
Sbjct: 151 SLAHQLVKKLTDLRKSGELTYLRPDAKSQVTVEYDENDQPIRVDAV---VISTQHDPNVT 207

Query: 240 RHELHPQVLEPLVSELVPFH 299
             +LH  V+E +++E++P H
Sbjct: 208 NDQLHKDVIEKVINEVIPSH 227



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>METK_STRA3 (Q8E5Y0) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase) (MAT)
          Length = 398

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = +3

Query: 75  STAHPYEKYLIT*QLSGLHDELLMHVVSDVVTWW*HRQHPFLLEALHRLVYTLQH----- 239
           S AH   K L   + SG    L     S V   +     P  ++A+   V + QH     
Sbjct: 151 SLAHQLVKKLTDLRKSGELTYLRPDAKSQVTVEYDENNQPIRVDAV---VISTQHDPNVT 207

Query: 240 RHELHPQVLEPLVSELVPFH 299
             +LH  V+E +++E++P H
Sbjct: 208 NDQLHKDVIEKVINEVIPSH 227



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>QUEF_ERWCT (Q6D8F4) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)|
          Length = 282

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 204 EALHRLVYTLQHRHELHPQVLEPLVSELVPFHR 302
           EAL R + + +H +E H Q +E + ++L+ +++
Sbjct: 213 EALLRYIVSFRHHNEFHEQCVERIFNDLMHYYQ 245



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>DSPP_MOUSE (P97399) Dentin sialophosphoprotein precursor (Dentin matrix|
           protein 3) (DMP-3) [Contains: Dentin phosphoprotein
           (Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)]
          Length = 934

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -1

Query: 312 GEPTGERVQVH*PEAQGPGDGVRAGAAEYIRDGEEPPGERDAAGAT 175
           G P+G  V+       G G+G  AG      DG +  G +   G T
Sbjct: 239 GSPSGNGVEEDEDTGSGDGEGAEAGDGRESHDGTKGQGGQSHGGNT 284



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>CADH1_CHICK (P08641) Epithelial-cadherin precursor (E-cadherin) (Cadherin-1)|
           (Liver cell adhesion molecule) (L-CAM)
          Length = 887

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 185 PVLPPSDDVRDNMH 144
           P+LPP DD+RDN++
Sbjct: 744 PLLPPEDDMRDNVY 757



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>BTBD4_HUMAN (Q86UZ6) BTB/POZ domain-containing protein 4 (Zinc finger protein|
           340)
          Length = 589

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 276 PEAQGPGDGVRAGAAEYIRDGEEPPGERDAAG 181
           PEA  PGDG       Y+ D E+P GE +  G
Sbjct: 524 PEALFPGDG------PYLEDPEDPRGEAEELG 549


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,477,641
Number of Sequences: 219361
Number of extensions: 845675
Number of successful extensions: 2642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2634
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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