>gb|AC117673.18| Mus musculus chromosome 1, clone RP23-390I1, complete sequence
          Length = 182102

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 78    gcacatgaaccagctagggcagttcaa 104
             |||||||||||||| ||||||||||||
Sbjct: 66821 gcacatgaaccagcaagggcagttcaa 66847

>gb|AC158990.2| Mus musculus BAC clone RP23-416E18 from chromosome 13, complete sequence
          Length = 191036

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 79     cacatgaaccagctagggcagttcaa 104
              ||||||||||||| ||||||||||||
Sbjct: 186484 cacatgaaccagcaagggcagttcaa 186509

>gb|AC166290.7| Mus musculus  BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 242055

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 79    cacatgaaccagctagggcagttcaa 104
             ||||||||||||| ||||||||||||
Sbjct: 58181 cacatgaaccagcaagggcagttcaa 58206

>emb|AL807806.6| Mouse DNA sequence from clone RP23-67K19 on chromosome X, complete
             sequence
          Length = 128018

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 79    cacatgaaccagctagggcagttcaa 104
             ||||||||||||| ||||||||||||
Sbjct: 91437 cacatgaaccagcaagggcagttcaa 91412

>emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chromosome 13, complete
              sequence
          Length = 220233

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 79     cacatgaaccagctagggcagttcaa 104
              ||||||||||||| ||||||||||||
Sbjct: 123087 cacatgaaccagcaagggcagttcaa 123062

>gb|AC131114.3| Mus musculus BAC clone RP24-212G16 from chromosome 19, complete
             sequence
          Length = 160122

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 79    cacatgaaccagctagggcagttcaa 104
             ||||||||||||| ||||||||||||
Sbjct: 31057 cacatgaaccagcaagggcagttcaa 31082

>gb|AC127545.4| Mus musculus BAC clone RP24-562H22 from chromosome 19, complete sequence
          Length = 146015

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 79     cacatgaaccagctagggcagttcaa 104
              ||||||||||||| ||||||||||||
Sbjct: 131851 cacatgaaccagcaagggcagttcaa 131826

>gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, complete sequence
          Length = 212387

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 79     cacatgaaccagctagggcagttcaa 104
              ||||||||||||| ||||||||||||
Sbjct: 177334 cacatgaaccagcaagggcagttcaa 177359

>emb|AL731860.8| Mouse DNA sequence from clone RP23-367H4 on chromosome 11 Contains the
             5' end of the AF424697 gene for DNA sequence AF424697
             (FLJ21950, KIAA0903-like) and a CpG island, complete
             sequence
          Length = 119258

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 79    cacatgaaccagctagggcagttcaa 104
             ||||||||||||| ||||||||||||
Sbjct: 95672 cacatgaaccagcaagggcagttcaa 95647

>gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, complete sequence
          Length = 193714

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 79     cacatgaaccagctagggcagttcaa 104
              ||||||||||||| ||||||||||||
Sbjct: 136463 cacatgaaccagcaagggcagttcaa 136488

>dbj|AK138696.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430014J21 product:unclassifiable, full
           insert sequence
          Length = 1916

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 79  cacatgaaccagctagggcagttcaa 104
           ||||||||||||| ||||||||||||
Sbjct: 783 cacatgaaccagcaagggcagttcaa 758

>emb|BX005281.15| Mouse DNA sequence from clone RP23-268A11 on chromosome X, complete
             sequence
          Length = 60173

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 79    cacatgaaccagctagggcagttcaa 104
             ||||||||||||| ||||||||||||
Sbjct: 11569 cacatgaaccagcaagggcagttcaa 11594

>emb|AL731823.19| Mouse DNA sequence from clone RP23-60B2 on chromosome X, complete
             sequence
          Length = 102565

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 79    cacatgaaccagctagggcagttcaa 104
             ||||||||||||| ||||||||||||
Sbjct: 23328 cacatgaaccagcaagggcagttcaa 23303

>gb|AC131692.5| Mus musculus BAC clone RP23-391B20 from 19, complete sequence
          Length = 236246

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 79   cacatgaaccagctagggcagttcaa 104
            ||||||||||||| ||||||||||||
Sbjct: 1808 cacatgaaccagcaagggcagttcaa 1833

>emb|AL731814.13| Mouse DNA sequence from clone RP23-109J20 on chromosome 2, complete
              sequence
          Length = 210821

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 79     cacatgaaccagctagggcagttcaa 104
              ||||||||||||| ||||||||||||
Sbjct: 142309 cacatgaaccagcaagggcagttcaa 142334

>gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, complete sequence
          Length = 224088

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 79     cacatgaaccagctagggcagttcaa 104
              ||||||||||||| ||||||||||||
Sbjct: 145740 cacatgaaccagcaagggcagttcaa 145715

>gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome 16, complete sequence
          Length = 191050

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 79    cacatgaaccagctagggcagttca 103
             ||||||||||||| |||||||||||
Sbjct: 63867 cacatgaaccagcaagggcagttca 63843

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 154      aaatgagttctccttattttg 174
                |||||||||||||||||||||
Sbjct: 35276111 aaatgagttctccttattttg 35276091

>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
              sequence
          Length = 156606

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 154    aaatgagttctccttattttg 174
              |||||||||||||||||||||
Sbjct: 154872 aaatgagttctccttattttg 154852

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 154      aaatgagttctccttattttg 174
                |||||||||||||||||||||
Sbjct: 35366183 aaatgagttctccttattttg 35366163

>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete
             sequence
          Length = 116443

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 154   aaatgagttctccttattttg 174
             |||||||||||||||||||||
Sbjct: 92343 aaatgagttctccttattttg 92363

>gb|AC153896.10| Mus musculus 10 BAC RP23-114D16 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 206003

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 79    cacatgaaccagctagggcagttca 103
             ||||||||||||| |||||||||||
Sbjct: 76054 cacatgaaccagcaagggcagttca 76078

>ref|NG_000017.2| Homo sapiens protocadherin beta cluster (PCDHB@) on chromosome 5
          Length = 257923

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      caagacagaaaatcagcaga 20
              ||||||||||||||||||||
Sbjct: 114314 caagacagaaaatcagcaga 114333

>ref|XM_898388.2| PREDICTED: Mus musculus hypothetical LOC624524 (LOC624524), mRNA
          Length = 3676

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 ggggcggggcccgcgtggcg 254
           ||||||||||||||||||||
Sbjct: 258 ggggcggggcccgcgtggcg 239

>ref|XM_982770.1| PREDICTED: Mus musculus hypothetical LOC624524 (LOC624524), mRNA
          Length = 3676

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 ggggcggggcccgcgtggcg 254
           ||||||||||||||||||||
Sbjct: 258 ggggcggggcccgcgtggcg 239

>gb|AC118245.17| Mus musculus chromosome 6, clone RP23-292C5, complete sequence
          Length = 230218

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 81     catgaaccagctagggcagttcaa 104
              ||||||||||| ||||||||||||
Sbjct: 221300 catgaaccagcgagggcagttcaa 221323

>gb|AC122039.4| Mus musculus BAC clone RP24-432H3 from chromosome 6, complete sequence
          Length = 169274

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     catgaaccagctagggcagttcaa 104
              ||||||||||| ||||||||||||
Sbjct: 149340 catgaaccagcgagggcagttcaa 149317

>ref|XM_759197.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0654) partial mRNA
          Length = 1776

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 caaggataaaatcgatgaaa 121
           ||||||||||||||||||||
Sbjct: 843 caaggataaaatcgatgaaa 862

>gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 193626

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   atgagttctccttattttgc 175
             ||||||||||||||||||||
Sbjct: 44823 atgagttctccttattttgc 44804

>gb|AC010768.10| Homo sapiens chromosome 11, clone RP11-58K22, complete sequence
          Length = 192391

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    ggattagggtttcaggacca 227
              ||||||||||||||||||||
Sbjct: 156062 ggattagggtttcaggacca 156081

>dbj|AK164390.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130094K04 product:membrane
           protein, palmitoylated 6 (MAGUK p55 subfamily member 6),
           full insert sequence
          Length = 3525

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 ggggcggggcccgcgtggcg 254
           ||||||||||||||||||||
Sbjct: 266 ggggcggggcccgcgtggcg 247

>gb|AC099694.12| Mus musculus, clone RP23-195D9, complete sequence
          Length = 191204

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   ggaagggaatgtaatcacag 142
             ||||||||||||||||||||
Sbjct: 64352 ggaagggaatgtaatcacag 64371

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 154      aaatgagttctccttatttt 173
                ||||||||||||||||||||
Sbjct: 22402955 aaatgagttctccttatttt 22402936

>gb|AC025436.2|AC025436 Homo sapiens chromosome 5 clone CTC-429E15, complete sequence
          Length = 184662

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      caagacagaaaatcagcaga 20
              ||||||||||||||||||||
Sbjct: 160109 caagacagaaaatcagcaga 160128

>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1144B06
          Length = 133689

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   aaatgagttctccttatttt 173
             ||||||||||||||||||||
Sbjct: 99938 aaatgagttctccttatttt 99919

>gb|AC153618.4| Mus musculus 6 BAC RP23-5O1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 204946

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   ggggcggggcccgcgtggcg 254
             ||||||||||||||||||||
Sbjct: 91786 ggggcggggcccgcgtggcg 91805

>gb|AC005754.1|AC005754 Homo sapiens chromosome 5, BAC clone 34j15 (LBNL H169), complete
             sequence
          Length = 125927

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     caagacagaaaatcagcaga 20
             ||||||||||||||||||||
Sbjct: 32627 caagacagaaaatcagcaga 32608

>gb|AC153819.5| Mus musculus 6 BAC RP23-445H14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 199780

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    ggggcggggcccgcgtggcg 254
              ||||||||||||||||||||
Sbjct: 179431 ggggcggggcccgcgtggcg 179450


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,314,111
Number of Sequences: 3902068
Number of extensions: 2314111
Number of successful extensions: 44236
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44162
Number of HSP's gapped (non-prelim): 74
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)