>SECA_GUITH (O78441) Preprotein translocase secA subunit|
          Length = 877

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 27/65 (41%), Positives = 33/65 (50%)
 Frame = +3

Query: 6   NRDGPVLIRTTSDNKTKLLEKHSCPYNLPTLTNKLTHKPKW*CNVEYEAKIKVGNGRALH 185
           N   PVLI TTS  K++LL      Y +P   N L  KP+   NV+ EA+I    GR   
Sbjct: 424 NLGRPVLIGTTSVEKSELLSSLLKEYGVP--HNLLNAKPE---NVQREAEIVAQAGRLGA 478

Query: 186 VTHRT 200
           VT  T
Sbjct: 479 VTIAT 483

>ZDH20_MOUSE (Q5Y5T1) Probable palmitoyltransferase ZDHHC20 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 20) (DHHC-20)
          Length = 380

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 205 CCVRCVTWSALPFPTFIFASYSTLHYHLGLCVSLFVRVG 89
           CC R V W  + F TF+   +S   Y + LCVS   R G
Sbjct: 9   CCQRVVGWVPVLFITFVVV-WSYYAYVVELCVSTISRTG 46

>MURI_FUSNN (Q8REE6) Glutamate racemase (EC 5.1.1.3)|
          Length = 264

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 36  TSDNKTKLLEKH--SCPYNLPTLTNKLTHKPKW*CNVEYEAKIKVGNGRALHVTHRTQQ 206
           T DN+ +LL K+    P N  TL    TH P    ++E   KIKV +  A+ +  RT Q
Sbjct: 160 TFDNRKELLNKYLSEIPKNADTLVLGCTHYPLIREDIEKNIKIKVVD-PAVEIVERTIQ 217

>NUCE_STRR6 (P0A3S4) DNA-entry nuclease (Competence-specific nuclease) (EC|
           3.1.30.-)
          Length = 274

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 6   NRDGPVLIRTTSDNKTKLLEKHSCPYNLPTLTNKLTHKPKW*CNVEYEAKIKVGNGRALH 185
           N D  V  +  +DNKTK + K +    +PT+ N L  K       +Y+ + + GNG    
Sbjct: 86  NLDAKVSSKPYADNKTKTVGKET----VPTVANALLSK----ATRQYKNRKETGNGSTSW 137

Query: 186 VTHRTQQINN 215
                 Q+ N
Sbjct: 138 TPPGWHQVKN 147

>NUCE_STRPN (P0A3S3) DNA-entry nuclease (Competence-specific nuclease) (EC|
           3.1.30.-)
          Length = 274

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 6   NRDGPVLIRTTSDNKTKLLEKHSCPYNLPTLTNKLTHKPKW*CNVEYEAKIKVGNGRALH 185
           N D  V  +  +DNKTK + K +    +PT+ N L  K       +Y+ + + GNG    
Sbjct: 86  NLDAKVSSKPYADNKTKTVGKET----VPTVANALLSK----ATRQYKNRKETGNGSTSW 137

Query: 186 VTHRTQQINN 215
                 Q+ N
Sbjct: 138 TPPGWHQVKN 147

>PALI_YARLI (Q7Z8R5) pH-response regulator protein palI/RIM9|
          Length = 728

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
 Frame = -1

Query: 239 PAAG*FTLVINLLCAMRDVERSAIS--YLYFCFVFHITLPLGFMC*FICE---------- 96
           P A  FTL++ +L  +  ++  A S  YL FC VF +   L  +  F+ +          
Sbjct: 93  PIATGFTLILTVLAMLAHIQGPASSSRYLLFCLVFSLPTFLLVLLSFLVDILLFVPHLDW 152

Query: 95  -GWEIIRAAV 69
            GW ++ A +
Sbjct: 153 GGWIVLAATI 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,499,715
Number of Sequences: 219361
Number of extensions: 913810
Number of successful extensions: 1850
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1849
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)