>RAE1C_MOUSE (O08604) Retinoic acid early inducible protein 1 gamma precursor|
           (RAE-1gamma)
          Length = 253

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +2

Query: 32  NDKETQGSHKECAYRKRAGDCYTCPVQDLCNKSSGGLLQCRIMKWMTNLY 181
           N   T G   E A     G+C T PV DLC K    +   ++    TN Y
Sbjct: 70  NKTMTSGDPGETANATEVGECLTQPVNDLCQKLRDKVSNTKVDTHKTNGY 119

>CD68_HUMAN (P34810) Macrosialin precursor (GP110) (CD68 antigen)|
          Length = 354

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -2

Query: 287 HWPTTCSHKATSLHVGGIRVYCQARSC*SDRGIGGSTNWSSTSLFYTEEAHPNFYYISLA 108
           H PTT +H  T+   G + V+  + S  + +G   +T+  +T+       HP     + +
Sbjct: 72  HGPTTATHNPTTTSHGNVTVHPTSNSTATSQGPSTATHSPATTSHGNATVHPTSNSTATS 131

Query: 107 PG 102
           PG
Sbjct: 132 PG 133

>RAE1A_MOUSE (O08602) Retinoic acid early inducible protein 1 alpha precursor|
           (RAE-1alpha)
          Length = 253

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 32  NDKETQGSHKECAYRKRAGDCYTCPVQDLCNKSSGGLLQCRIMKWMTNLY 181
           N   T G   E A     G+C T P++DLC K    +   ++    TN Y
Sbjct: 70  NKTMTSGDPGETANATEVGECLTQPLKDLCQKLRNKVSNTKVDTHKTNGY 119

>RAE1D_MOUSE (Q9JI58) Retinoic acid early inducible protein 1 delta precursor|
           (RAE-1delta)
          Length = 249

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 32  NDKETQGSHKECAYRKRAGDCYTCPVQDLCNKSSGGLLQCRIMKWMTNLY 181
           N   T G   E A     G+C T P++DLC K    +   ++    TN Y
Sbjct: 66  NKTMTSGDPGETANATEVGECLTQPLKDLCQKLRDKVSNTKVDTHKTNGY 115

>PYRG_MYCPU (Q98PQ3) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 539

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 21  RIAQMTRKHKDPTRNAPIGKEQVIVIHARCK 113
           RIAQ TR++K PT    +G + + V HAR K
Sbjct: 371 RIAQYTRENKIPTFGICLGFQAMSVAHARMK 401

>HVRB_RHOCA (P42507) AHCY transcriptional activator hvrB|
          Length = 292

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 313 PKQRDKVDSIGRLPAPTKPLPFTSEELEFTAKRE 212
           P+Q   ++S+G +PA  K + F +EEL   A RE
Sbjct: 201 PEQMQLLESMGLVPAALKFVDFPNEELALAAARE 234

>YB71_SCHPO (O14318) Hypothetical protein C16E9.01c in chromosome II|
          Length = 295

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = -3

Query: 370 KPEWFAKKGRLIPKAARPPPKQRDKVDSIGRLPAPTKPLP-----FTSEELEFTAKRE 212
           KP     K  ++P   RP P ++  +D++GR  AP KP P      + EE +F  + +
Sbjct: 22  KPMIRVSKQWVVPP--RPKPGRKPALDALGRRKAPIKPRPGPTSALSVEEAKFRVREK 77

>SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (Src-associated in
           mitosis 68 kDa protein) (Sam68)
          Length = 433

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 334 PKAARPPPKQRDKVDSIGRLPAPTKPLPFTSEE 236
           P A R  P  R +   I R+P P  P P T EE
Sbjct: 326 PPAVRGAPAPRARAAGIQRIPLPPPPAPETYEE 358

>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
 Frame = -3

Query: 331 KAARPPPKQRDKVDSIG-----RLPAPTKPLP---FTSEE------LEFTAKREAAKVIA 194
           KA  PPPK+  K +S       + PAP K  P   + SEE      + +  KR+ +  I 
Sbjct: 564 KAKEPPPKKTKKNNSSNSNVSKKEPAPMKSKPPPTYESEEEDKCKPMSYEEKRQLSLDIN 623

Query: 193 A*EGVQIGHPLHYSTLKKPT 134
              G ++G  +H    ++P+
Sbjct: 624 KLPGEKLGRVVHIIQSREPS 643

>TNR1A_MOUSE (P25118) Tumor necrosis factor receptor superfamily member 1A|
           precursor (p60) (TNF-R1) (TNF-RI) (TNFR-I) (p55)
          Length = 454

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 143 LQCRIMKWMTNLYSLLCRD 199
           L CR  +W   +YS++CRD
Sbjct: 233 LMCRYPRWRPEVYSIICRD 251

>HD_MOUSE (P42859) Huntingtin (Huntington disease protein homolog) (HD|
           protein)
          Length = 3119

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 334 PKAARPPPKQRDKVDSIGRLPAPTKPLPFTSEELEFTAKRE 212
           P    PPP Q  +    G+ P P  PLP  +EE     K+E
Sbjct: 30  PPPPPPPPPQPPQPPPQGQPPPPPPPLPGPAEEPLHRPKKE 70

>PHB2_MOUSE (O35129) Prohibitin-2 (B-cell receptor-associated protein BAP37)|
           (Repressor of estrogen receptor activity)
          Length = 299

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 255 SGFVGAGSRPMLSTLSRCLGGGLAAFGIRRPFFANHSG 368
           +G + AG R M + L   LG G  A+G+R   F    G
Sbjct: 9   AGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGG 46

>PHB2_HUMAN (Q99623) Prohibitin-2 (B-cell receptor-associated protein BAP37)|
           (Repressor of estrogen receptor activity) (D-prohibitin)
          Length = 299

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 255 SGFVGAGSRPMLSTLSRCLGGGLAAFGIRRPFFANHSG 368
           +G + AG R M + L   LG G  A+G+R   F    G
Sbjct: 9   AGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGG 46

>BRD2_HUMAN (P25440) Bromodomain-containing protein 2 (RING3 protein) (O27.1.1)|
          Length = 801

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 346 GRLIPKAARPPPKQRDKVDSIGR-LPAPTKPLPFTSEELEFTAKREAAKVIAA*EGV 179
           G L PKAAR PP +R+     GR +  P K LP + ++ + + K + ++ +    G+
Sbjct: 304 GSLEPKAARLPPMRRES----GRPIKPPRKDLPDSQQQHQSSKKGKLSEQLKHCNGI 356

>TRUB_STAHJ (Q4L5X4) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 305

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = -3

Query: 358 FAKKGRLIPKAARPPPKQRDKVDSIGRLPAPTKPLPFTSEELEFTAKREAAK-----VIA 194
           +A+KG  + +     P ++  +DSI R    T  L F   +  F  + +  K      +A
Sbjct: 133 YARKGETVER-----PIRKVNIDSIAR----TSELQFEDGKCHFNIEVKCGKGTYIRTLA 183

Query: 193 A*EGVQIGHPLHYSTLKK 140
              G Q+G+P H S L +
Sbjct: 184 TDIGKQLGYPAHMSLLTR 201

>RAPH_BACSU (P40771) Response regulator aspartate phosphatase H (EC 3.1.-.-)|
           (PSP28)
          Length = 431

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 155 FYTEEAHPNFYYISLAPGMYNNHLLFSYRRI 63
           ++ ++ H + Y+I  A  +Y NH L+S R I
Sbjct: 150 YHMKQTHVSMYHILQALDIYQNHPLYSIRTI 180

>RRPP_RABVP (P06747) Phosphoprotein (P protein) (M1)|
          Length = 297

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = -3

Query: 346 GRLIPKAARPPPKQRDKVDSIGRLPAPTKPLP------FTSEELEFTAKREAAKVIA 194
           GR + K   P P QR+   S  R+ A T   P       T+EE + + + E A  IA
Sbjct: 150 GRELKKETTPTPSQRESQSSKARMAAQTASGPPALEWSATNEEDDLSVEAEIAHQIA 206

>TNR1A_RAT (P22934) Tumor necrosis factor receptor superfamily member 1A|
           precursor (p60) (TNF-R1) (TNF-RI) (TNFR-I) (p55)
          Length = 461

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 143 LQCRIMKWMTNLYSLLCRD 199
           L CR  +W   +YS++CRD
Sbjct: 232 LLCRYPQWRPRVYSIICRD 250

>DIG1_CAEEL (Q09165) Mesocentin precursor|
          Length = 13100

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 282   PMLSTLSRCLGGGLAAFGIRRPFFAN 359
             PML T +R + GGL   GIRRP+  N
Sbjct: 12587 PMLRT-TRAVAGGLCNDGIRRPYHFN 12611

>VGLM_DUGBV (Q02004) M polyprotein precursor [Contains: Glycoprotein G2;|
            Nonstructural protein NS-M; Glycoprotein G1]
          Length = 1551

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = +3

Query: 201  TLAASRLAVNSNSSDVKGSGFVGAGSRPMLSTLS-------RCLGGGLAA 329
            TLAAS +A++ +S+D+KG   + +G    +  L        + +G GLA+
Sbjct: 936  TLAASNIAMSWSSTDIKGEKVILSGRSTSIIKLKEKTGVMWKLVGSGLAS 985

>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 334 PKAARPPPKQRDKVDSIGRLPAPTKPLPFTSEE 236
           P   R  P  R +   I R+P P  P P T EE
Sbjct: 336 PPTVRGAPAPRARTAGIQRIPLPPPPAPETYEE 368

>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)|
            (Obscurin-MLCK) (Obscurin-RhoGEF)
          Length = 7968

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 343  RLIPKAARPPPKQRDKVDSIGRLPAPTKPLP 251
            R +PK+A+P P      + +   P PT P P
Sbjct: 7326 RKVPKSAQPEPPSPMAEEELAEFPEPTWPWP 7356

>MPRI_BOVIN (P08169) Cation-independent mannose-6-phosphate receptor precursor|
           (CI Man-6-P receptor) (CI-MPR) (M6PR) (Insulin-like
           growth factor 2 receptor) (Insulin-like growth factor II
           receptor) (IGF-II receptor) (300 kDa mannose 6-phosphate
           receptor)
          Length = 2499

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 170 SSTSLFYTEEAHPNFYYISLAPG 102
           +S SLFYT EA    YY+S+  G
Sbjct: 355 ASDSLFYTSEADEYTYYLSICGG 377

>DDL_NITEU (Q82VS0) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine|
           synthetase) (D-Ala-D-Ala ligase)
          Length = 305

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 185 GSTNWSSTSLFYTEEAHPNFYYISLAPGMYNNHLL 81
           G T WS   L   E   P F   + +PGM ++ L+
Sbjct: 246 GCTGWSRVDLILDENEQPFFLETNTSPGMTDHSLV 280

>SECY_ARATH (Q38885) Preprotein translocase secY subunit, chloroplast precursor|
           (CpSecY)
          Length = 551

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 204 LAASRLAVNSNSSDVKGSGFVG-AGSRPMLSTLSRCLGGGLAAFGI 338
           LA SRL +      V    FVG      +LSTL    GGG+   GI
Sbjct: 149 LALSRLGIYIPLGGVNREAFVGNLDQNSILSTLDTFSGGGIGRLGI 194

>CLMN_MOUSE (Q8C5W0) Calmin|
          Length = 1052

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 370 KPEWFAKKGRLIPKAARPPPKQRDKVDSIGRLPAPT 263
           + E  A + RL PK   PPPK  ++ D    LP  T
Sbjct: 623 RAETEAAESRLEPKKLEPPPKDPEQEDQGHALPPET 658


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,153,499
Number of Sequences: 219361
Number of extensions: 1277112
Number of successful extensions: 3719
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3715
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)