ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY360387.2| Oryza sativa (japonica cultivar-group) chromosome... 149 7e-33
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 149 7e-33
3dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic D... 149 7e-33
4dbj|AK073645.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 7e-33
5gb|AY106892.1| Zea mays PCO104142 mRNA sequence 123 4e-25
6gb|AC152495.1| Zea mays BAC clone Z486N13, complete sequence 44 0.32
7gb|AC084407.10| Mus Musculus Strain C57BL6/J Chromosome 11 Clone... 42 1.3
8gb|AC026691.5| Homo sapiens chromosome 5 clone CTC-203F4, comple... 42 1.3
9emb|AL593858.20| Mouse DNA sequence from clone RP23-151M22 on ch... 42 1.3
10ref|NM_117621.2| Arabidopsis thaliana CYP705A1; heme binding / i... 40 5.0
11gb|AC140404.3| Mus musculus BAC clone RP23-146B9 from chromosome... 40 5.0
12emb|AL161797.10| Human DNA sequence from clone RP5-871E2 on chro... 40 5.0
13gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.0
14gb|AC110519.13| Mus musculus chromosome 8, clone RP23-183M15, co... 40 5.0
15emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 5.0
16emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, ... 40 5.0 
>gb|AY360387.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0003M24,
              complete sequence
          Length = 150085

 Score =  149 bits (75), Expect = 7e-33
 Identities = 114/127 (89%)
 Strand = Plus / Plus

                                                                          
Query: 246    gtgaagggaagtggctttgtgggagcaggtagtcggccaatgctatcaaccttgtctcgt 305
              ||||||||||| |||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 115007 gtgaagggaagcggctttgttggggcaggcaggcggccaatgctatcaaccttgtctcgt 115066

                                                                          
Query: 306    tgcttgggtggaggcctcgccgcttttggtataaggcggcccttctttgcaaaccactcg 365
              ||||||||||| ||||| || ||||| |||| ||| ||||| ||||||||||||||||||
Sbjct: 115067 tgcttgggtgggggccttgctgctttaggtaaaagtcggcctttctttgcaaaccactcg 115126

                     
Query: 366    ggtttga 372
              || ||||
Sbjct: 115127 ggcttga 115133
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  149 bits (75), Expect = 7e-33
 Identities = 114/127 (89%)
 Strand = Plus / Minus

                                                                            
Query: 246      gtgaagggaagtggctttgtgggagcaggtagtcggccaatgctatcaaccttgtctcgt 305
                ||||||||||| |||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 13068444 gtgaagggaagcggctttgttggggcaggcaggcggccaatgctatcaaccttgtctcgt 13068385

                                                                            
Query: 306      tgcttgggtggaggcctcgccgcttttggtataaggcggcccttctttgcaaaccactcg 365
                ||||||||||| ||||| || ||||| |||| ||| ||||| ||||||||||||||||||
Sbjct: 13068384 tgcttgggtgggggccttgctgctttaggtaaaagtcggcctttctttgcaaaccactcg 13068325

                       
Query: 366      ggtttga 372
                || ||||
Sbjct: 13068324 ggcttga 13068318
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>dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone: B1100F03
          Length = 139217

 Score =  149 bits (75), Expect = 7e-33
 Identities = 114/127 (89%)
 Strand = Plus / Minus

                                                                         
Query: 246   gtgaagggaagtggctttgtgggagcaggtagtcggccaatgctatcaaccttgtctcgt 305
             ||||||||||| |||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 48964 gtgaagggaagcggctttgttggggcaggcaggcggccaatgctatcaaccttgtctcgt 48905

                                                                         
Query: 306   tgcttgggtggaggcctcgccgcttttggtataaggcggcccttctttgcaaaccactcg 365
             ||||||||||| ||||| || ||||| |||| ||| ||||| ||||||||||||||||||
Sbjct: 48904 tgcttgggtgggggccttgctgctttaggtaaaagtcggcctttctttgcaaaccactcg 48845

                    
Query: 366   ggtttga 372
             || ||||
Sbjct: 48844 ggcttga 48838
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>dbj|AK073645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052F06, full
           insert sequence
          Length = 1205

 Score =  149 bits (75), Expect = 7e-33
 Identities = 114/127 (89%)
 Strand = Plus / Minus

                                                                       
Query: 246 gtgaagggaagtggctttgtgggagcaggtagtcggccaatgctatcaaccttgtctcgt 305
           ||||||||||| |||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 865 gtgaagggaagcggctttgttggggcaggcaggcggccaatgctatcaaccttgtctcgt 806

                                                                       
Query: 306 tgcttgggtggaggcctcgccgcttttggtataaggcggcccttctttgcaaaccactcg 365
           ||||||||||| ||||| || ||||| |||| ||| ||||| ||||||||||||||||||
Sbjct: 805 tgcttgggtgggggccttgctgctttaggtaaaagtcggcctttctttgcaaaccactcg 746

                  
Query: 366 ggtttga 372
           || ||||
Sbjct: 745 ggcttga 739
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>gb|AY106892.1| Zea mays PCO104142 mRNA sequence
          Length = 746

 Score =  123 bits (62), Expect = 4e-25
 Identities = 110/126 (87%)
 Strand = Plus / Minus

                                                                       
Query: 245 cgtgaagggaagtggctttgtgggagcaggtagtcggccaatgctatcaaccttgtctcg 304
           ||||||||| ||||||||||| || || || || |||||||||||||| ||||| |||||
Sbjct: 434 cgtgaaggggagtggctttgtcggcgcgggcaggcggccaatgctatcgaccttatctcg 375

                                                                       
Query: 305 ttgcttgggtggaggcctcgccgcttttggtataaggcggcccttctttgcaaaccactc 364
            ||||||||||||||||| || ||||||||||  ||||||||||||||  ||||||||||
Sbjct: 374 ctgcttgggtggaggccttgctgcttttggtaacaggcggcccttcttctcaaaccactc 315

                 
Query: 365 gggttt 370
            |||||
Sbjct: 314 aggttt 309
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>gb|AC152495.1| Zea mays BAC clone Z486N13, complete sequence
          Length = 169348

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 149  tgtagaataatgaagtggatga 170
            ||||||||||||||||||||||
Sbjct: 2816 tgtagaataatgaagtggatga 2795
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>gb|AC084407.10| Mus Musculus Strain C57BL6/J Chromosome 11 Clone RP23-271O13, complete
             sequence
          Length = 239837

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 243   gacgtgaagggaagtggcttt 263
             |||||||||||||||||||||
Sbjct: 64288 gacgtgaagggaagtggcttt 64268
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>gb|AC026691.5| Homo sapiens chromosome 5 clone CTC-203F4, complete sequence
          Length = 135062

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 29    acaaatgacaaggaaacacaa 49
             |||||||||||||||||||||
Sbjct: 13797 acaaatgacaaggaaacacaa 13777
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>emb|AL593858.20| Mouse DNA sequence from clone RP23-151M22 on chromosome 11, complete
             sequence
          Length = 200298

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 243   gacgtgaagggaagtggcttt 263
             |||||||||||||||||||||
Sbjct: 96863 gacgtgaagggaagtggcttt 96843
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>ref|NM_117621.2| Arabidopsis thaliana CYP705A1; heme binding / iron ion binding /
           monooxygenase/ oxygen binding AT4G15330 (CYP705A1) mRNA,
           complete cds
          Length = 1686

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 144 ttcagtgtagaataatgaagtgga 167
           ||||||| ||||||||||||||||
Sbjct: 597 ttcagtggagaataatgaagtgga 620
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>gb|AC140404.3| Mus musculus BAC clone RP23-146B9 from chromosome 5, complete sequence
          Length = 163710

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    aagacttatgtaataaaagt 130
              ||||||||||||||||||||
Sbjct: 110855 aagacttatgtaataaaagt 110836
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>emb|AL161797.10| Human DNA sequence from clone RP5-871E2 on chromosome 1p22.2-31.1
             Contains the 3' end of a novel gene (FLJ20403), complete
             sequence
          Length = 100571

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   tcttcagtgtagaataatga 161
             ||||||||||||||||||||
Sbjct: 11420 tcttcagtgtagaataatga 11401
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 341     gcggcccttctttgcaaacc 360
               ||||||||||||||||||||
Sbjct: 2008074 gcggcccttctttgcaaacc 2008093
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>gb|AC110519.13| Mus musculus chromosome 8, clone RP23-183M15, complete sequence
          Length = 217236

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aagaagaaaatgtcattgcc 21
             ||||||||||||||||||||
Sbjct: 79208 aagaagaaaatgtcattgcc 79189
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>emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3
          Length = 200252

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 144    ttcagtgtagaataatgaagtgga 167
              ||||||| ||||||||||||||||
Sbjct: 117181 ttcagtggagaataatgaagtgga 117158
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>emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41
          Length = 197419

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 144   ttcagtgtagaataatgaagtgga 167
             ||||||| ||||||||||||||||
Sbjct: 70658 ttcagtggagaataatgaagtgga 70635


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,184,146
Number of Sequences: 3902068
Number of extensions: 3184146
Number of successful extensions: 47359
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47304
Number of HSP's gapped (non-prelim): 55
length of query: 372
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 350
effective length of database: 17,147,199,772
effective search space: 6001519920200
effective search space used: 6001519920200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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