ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_967076.1| PREDICTED: Tribolium castaneum similar to CG336... 42 1.3
2gb|AE011914.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.3
3dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 1.3
4gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 5.2
5ref|NM_031197.1| Mus musculus solute carrier family 2 (facilitat... 40 5.2
6gb|AC121268.7| Mus musculus chromosome 3, clone RP24-468O23, com... 40 5.2
7emb|BX511147.12| Zebrafish DNA sequence from clone DKEYP-36E3 in... 40 5.2
8gb|BC034675.1| Mus musculus solute carrier family 2 (facilitated... 40 5.2
9dbj|AK149532.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 40 5.2
10dbj|AK165430.1| Mus musculus adult male kidney cDNA, RIKEN full-... 40 5.2
11dbj|AK005068.1| Mus musculus adult male liver cDNA, RIKEN full-l... 40 5.2
12gb|AC022472.2|T20H2 Sequence of BAC T20H2 from Arabidopsis thali... 40 5.2
13dbj|AP004469.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 5.2
14emb|X16986.1|MURGLUC Murine mRNA for liver glucose transporter 40 5.2
15emb|X15684.1|MMGLUTRA Mouse mRNA for liver-type glucose transpor... 40 5.2
16gb|M84702.1|ATHTUB5B Arabidopsis thaliana beta-5 tubulin (TUB5) ... 40 5.2

>ref|XM_967076.1| PREDICTED: Tribolium castaneum similar to CG33653-PA, isoform A
           (LOC660877), mRNA
          Length = 4323

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 39  atggtgcaatctggtgcttgt 59
           |||||||||||||||||||||
Sbjct: 613 atggtgcaatctggtgcttgt 633



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>gb|AE011914.1| Xanthomonas axonopodis pv. citri str. 306,  section 292 of 469 of the
            complete genome
          Length = 10174

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 291  cggtggccttgctgtcggcgacggc 315
            |||||||||||||||||||| ||||
Sbjct: 5815 cggtggccttgctgtcggcggcggc 5791



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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 235   ccgatttattcaaccgcagcg 255
             |||||||||||||||||||||
Sbjct: 56000 ccgatttattcaaccgcagcg 55980



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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    atgagcaaccacggtggcct 299
              ||||||||||||||||||||
Sbjct: 618915 atgagcaaccacggtggcct 618934



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>ref|NM_031197.1| Mus musculus solute carrier family 2 (facilitated glucose
            transporter), member 2 (Slc2a2), mRNA
          Length = 2491

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 320  aattcctggcctcttcagagagtg 343
            |||||||||| |||||||||||||
Sbjct: 1607 aattcctggcgtcttcagagagtg 1630



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>gb|AC121268.7| Mus musculus chromosome 3, clone RP24-468O23, complete sequence
          Length = 176264

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 320   aattcctggcctcttcagagagtg 343
             |||||||||| |||||||||||||
Sbjct: 18188 aattcctggcgtcttcagagagtg 18165



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>emb|BX511147.12| Zebrafish DNA sequence from clone DKEYP-36E3 in linkage group 25,
             complete sequence
          Length = 150385

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    tgttttggtgtgcatcagtgcatg 41
             |||||| |||||||||||||||||
Sbjct: 27260 tgtttttgtgtgcatcagtgcatg 27237



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>gb|BC034675.1| Mus musculus solute carrier family 2 (facilitated glucose
            transporter), member 2, mRNA (cDNA clone MGC:25413
            IMAGE:4236331), complete cds
          Length = 2468

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 320  aattcctggcctcttcagagagtg 343
            |||||||||| |||||||||||||
Sbjct: 1577 aattcctggcgtcttcagagagtg 1600



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>dbj|AK149532.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730032F11 product:solute
           carrier family 2 (facilitated glucose transporter),
           member 2, full insert sequence
          Length = 1651

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 320 aattcctggcctcttcagagagtg 343
           |||||||||| |||||||||||||
Sbjct: 771 aattcctggcgtcttcagagagtg 794



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>dbj|AK165430.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:F520013J12 product:solute carrier family 2
            (facilitated glucose transporter), member 2, full insert
            sequence
          Length = 2503

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 320  aattcctggcctcttcagagagtg 343
            |||||||||| |||||||||||||
Sbjct: 1593 aattcctggcgtcttcagagagtg 1616



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>dbj|AK005068.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched
            library, clone:1300019L19 product:solute carrier family 2
            (facilitated glucose transporter), member 2, full insert
            sequence
          Length = 2538

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 320  aattcctggcctcttcagagagtg 343
            |||||||||| |||||||||||||
Sbjct: 1659 aattcctggcgtcttcagagagtg 1682



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>gb|AC022472.2|T20H2 Sequence of BAC T20H2 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 92710

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ttggtgtgcatcagtgcatg 41
             ||||||||||||||||||||
Sbjct: 72149 ttggtgtgcatcagtgcatg 72168



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>dbj|AP004469.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT15D01, TM0004a,
             complete sequence
          Length = 92631

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   tgcagcaagcactagcagct 384
             ||||||||||||||||||||
Sbjct: 67539 tgcagcaagcactagcagct 67558



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>emb|X16986.1|MURGLUC Murine mRNA for liver glucose transporter
          Length = 2183

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 320  aattcctggcctcttcagagagtg 343
            |||||||||| |||||||||||||
Sbjct: 1597 aattcctggcgtcttcagagagtg 1620



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>emb|X15684.1|MMGLUTRA Mouse mRNA for liver-type glucose transporter protein
          Length = 2491

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 320  aattcctggcctcttcagagagtg 343
            |||||||||| |||||||||||||
Sbjct: 1607 aattcctggcgtcttcagagagtg 1630



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>gb|M84702.1|ATHTUB5B Arabidopsis thaliana beta-5 tubulin (TUB5) gene, complete cds
          Length = 3026

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   ttggtgtgcatcagtgcatg 41
            ||||||||||||||||||||
Sbjct: 1094 ttggtgtgcatcagtgcatg 1113


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,650,799
Number of Sequences: 3902068
Number of extensions: 3650799
Number of successful extensions: 74114
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74081
Number of HSP's gapped (non-prelim): 33
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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