ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (E... 31 0.63
2OL287_RAT (P23267) Olfactory receptor 287 (Olfactory receptor-li... 30 1.4
3GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ... 29 2.4
4Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71) 28 4.1
5CRF1_YARLI (P45815) Copper resistance protein CRF1 28 4.1
6OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid) 27 9.1
7RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote... 27 9.1
8SPEG_HUMAN (Q15772) Striated muscle preferentially expressed pro... 27 9.1

>GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28|
           kDa cold-induced protein)
          Length = 236

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -1

Query: 384 LAAWMDRFSELDAAKAALP-EVDRVVEF 304
           LAAW +RF   DAAK  +P + D+++EF
Sbjct: 196 LAAWEERFRATDAAKGVVPDDADKLLEF 223



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>OL287_RAT (P23267) Olfactory receptor 287 (Olfactory receptor-like protein|
           F6)
          Length = 311

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 115 VQFYTRTSTKSKQIFWDRGNIIN*SLFERNMHFSYSMGLTFL*YLLVVRSNNSGSSLCLP 294
           + F T    K+   F  RG +I+ +     M+F +S+G T   +LL V + +   ++CLP
Sbjct: 74  IWFTTACVPKTLATFAPRGGVISLAGCATQMYFVFSLGCTEY-FLLAVMAYDRYLAICLP 132

Query: 295 L 297
           L
Sbjct: 133 L 133



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>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 384 LAAWMDRFSELDAAKAALPEVDRVVEF 304
           L  W  RF+   AAK  LP+ ++VV+F
Sbjct: 195 LDGWSQRFAAHPAAKRVLPDTEKVVQF 221



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>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)|
          Length = 875

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +3

Query: 267 QQRQQLVPASSWQIRPPYQPLATPPSQHRAR*SDPSMPP 383
           QQ  Q  P    Q +PP QP   PP Q       P  PP
Sbjct: 101 QQPPQPPPDQPQQPQPPQQPPQQPPQQQPQPPQPPQQPP 139



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>CRF1_YARLI (P45815) Copper resistance protein CRF1|
          Length = 411

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 267 QQRQQLVPASSWQIRPPYQPLATPPSQHRAR*SDPSMPP 383
           QQ Q   P  +  +  P  P+ATP   HRA  + PS+ P
Sbjct: 146 QQPQMPTPVHTTNVTTP--PVATPTHSHRALSTTPSLSP 182



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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 258  PK*QQRQQLVPASSWQIRPPYQPLATPPSQHRAR*SDPSMPP 383
            P  QQ+QQ       Q +PPYQ +A PP Q       P  PP
Sbjct: 1569 PPPQQQQQ---PQQQQQQPPYQQVAGPPGQ-----QPPQAPP 1602



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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 267 QQRQQLVPASSWQIRPPYQPLATPPSQHRAR 359
           QQ   L P       PP QP+  PPSQ+ A+
Sbjct: 800 QQTPTLHPPRLPSPHPPLQPMTAPPSQNSAQ 830



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>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3223

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 312 PPYQPLATPPSQHRAR*SDPSMP 380
           PP QP ATP S HR R  +P +P
Sbjct: 324 PPAQPAATPTSPHR-RTQEPVLP 345


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,161,501
Number of Sequences: 219361
Number of extensions: 896406
Number of successful extensions: 2001
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1998
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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