ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.21
2gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.21
3emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 44 0.21
4emb|AL935181.5| Zebrafish DNA sequence from clone CH211-162K9, c... 42 0.84
5ref|NM_121696.2| Arabidopsis thaliana kinase AT5G16900 mRNA, com... 40 3.3
6gb|AC009370.7| Drosophila melanogaster 3L BAC RP98-35F4 (Roswell... 40 3.3
7gb|AC009368.8| Drosophila melanogaster 3L BAC RP98-4F7 (Roswell ... 40 3.3
8gb|AC021659.16| Homo sapiens 3 BAC RP11-446K3 (Roswell Park Canc... 40 3.3
9gb|AE003520.4| Drosophila melanogaster chromosome 3L, section 65... 40 3.3

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 91     tctcaactaattaataacaacc 112
              ||||||||||||||||||||||
Sbjct: 404415 tctcaactaattaataacaacc 404436



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 91     tctcaactaattaataacaacc 112
              ||||||||||||||||||||||
Sbjct: 404415 tctcaactaattaataacaacc 404436



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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 91     tctcaactaattaataacaacc 112
              ||||||||||||||||||||||
Sbjct: 111733 tctcaactaattaataacaacc 111754



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>emb|AL935181.5| Zebrafish DNA sequence from clone CH211-162K9, complete sequence
          Length = 156592

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 93   tcaactaattaataacaacca 113
            |||||||||||||||||||||
Sbjct: 6271 tcaactaattaataacaacca 6291



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>ref|NM_121696.2| Arabidopsis thaliana kinase AT5G16900 mRNA, complete cds
          Length = 2601

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 199  ttggatttccatcaaactccaact 222
            |||||||||| |||||||||||||
Sbjct: 1489 ttggatttccttcaaactccaact 1466



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>gb|AC009370.7| Drosophila melanogaster 3L BAC RP98-35F4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 174919

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   catttatgtatatagctgcc 162
             ||||||||||||||||||||
Sbjct: 27465 catttatgtatatagctgcc 27484



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>gb|AC009368.8| Drosophila melanogaster 3L BAC RP98-4F7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 158816

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    catttatgtatatagctgcc 162
              ||||||||||||||||||||
Sbjct: 148132 catttatgtatatagctgcc 148151



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>gb|AC021659.16| Homo sapiens 3 BAC RP11-446K3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 101800

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   gtgctgctaacagggatgct 135
             ||||||||||||||||||||
Sbjct: 83980 gtgctgctaacagggatgct 83961



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>gb|AE003520.4| Drosophila melanogaster chromosome 3L, section 65 of 83 of the complete
             sequence
          Length = 275124

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   catttatgtatatagctgcc 162
             ||||||||||||||||||||
Sbjct: 70900 catttatgtatatagctgcc 70919


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,044,853
Number of Sequences: 3902068
Number of extensions: 2044853
Number of successful extensions: 37244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37210
Number of HSP's gapped (non-prelim): 34
length of query: 257
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 235
effective length of database: 17,147,199,772
effective search space: 4029591946420
effective search space used: 4029591946420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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