ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart49h05 |
|---|---|
| Clone Library Name | barley_pub |
>HEM3_ACIAD (Q6FFA9) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 311 Score = 33.1 bits (74), Expect = 0.29 Identities = 16/32 (50%), Positives = 21/32 (65%) Frame = +3 Query: 198 PPLGAGALELPCRNSSRYLLDLHASLANLPVS 293 P +G GAL L CR + + +LDL A LA+ P S Sbjct: 197 PAVGQGALGLECRANDKKILDLIAPLAHQPTS 228
>HEM3_STAES (Q8CNY8) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 308 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +3 Query: 198 PPLGAGALELPCRNSSRYLLDLHASLANLPVSQ 296 P +G GAL + CR+ + LLDL + + N V+Q Sbjct: 193 PAIGQGALGIECRSDDKELLDLLSKVHNHDVAQ 225
>HEM3_STAEQ (Q5HNN3) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 308 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +3 Query: 198 PPLGAGALELPCRNSSRYLLDLHASLANLPVSQ 296 P +G GAL + CR+ + LLDL + + N V+Q Sbjct: 193 PAIGQGALGIECRSDDKELLDLLSKVHNHDVAQ 225
>AK1H_ECOLI (P00561) Bifunctional aspartokinase/homoserine dehydrogenase I| (AKI-HDI) [Includes: Aspartokinase I (EC 2.7.2.4); Homoserine dehydrogenase I (EC 1.1.1.3)] Length = 820 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -3 Query: 380 NWIQQE-VGLSMTGIGSFQALLIRIMGANLANWQ 282 +W++ + + L + G+ + +ALL + G NL NWQ Sbjct: 489 SWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQ 522
>ARAA_SALTY (P06189) L-arabinose isomerase (EC 5.3.1.4)| Length = 500 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/58 (34%), Positives = 28/58 (48%) Frame = +2 Query: 35 VSKLVDIQVPYRLHKNNLDDFKSIAQK*KLPISDITRS*YANIQW*KQVDLILSATAW 208 V+ L+D+ YRL N +D K+ KLP+ AN W Q DL ++ AW Sbjct: 393 VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPV--------ANALWKAQPDLPTASEAW 442
>ARAA_SALTI (P58539) L-arabinose isomerase (EC 5.3.1.4)| Length = 500 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/58 (34%), Positives = 28/58 (48%) Frame = +2 Query: 35 VSKLVDIQVPYRLHKNNLDDFKSIAQK*KLPISDITRS*YANIQW*KQVDLILSATAW 208 V+ L+D+ YRL N +D K+ KLP+ AN W Q DL ++ AW Sbjct: 393 VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPV--------ANALWKAQPDLPTASEAW 442
>ARAA_ECOLI (P08202) L-arabinose isomerase (EC 5.3.1.4)| Length = 500 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/58 (34%), Positives = 28/58 (48%) Frame = +2 Query: 35 VSKLVDIQVPYRLHKNNLDDFKSIAQK*KLPISDITRS*YANIQW*KQVDLILSATAW 208 V+ L+D+ YRL N +D K+ KLP+ AN W Q DL ++ AW Sbjct: 393 VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPV--------ANALWKAQPDLPTASEAW 442
>ARAA_ECO57 (P58538) L-arabinose isomerase (EC 5.3.1.4)| Length = 500 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/58 (34%), Positives = 28/58 (48%) Frame = +2 Query: 35 VSKLVDIQVPYRLHKNNLDDFKSIAQK*KLPISDITRS*YANIQW*KQVDLILSATAW 208 V+ L+D+ YRL N +D K+ KLP+ AN W Q DL ++ AW Sbjct: 393 VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPV--------ANALWKAQPDLPTASEAW 442
>HEM32_STRCO (Q9KY00) Porphobilinogen deaminase 2 (EC 2.5.1.61) (PBG 2)| (Hydroxymethylbilane synthase 2) (HMBS 2) (Pre-uroporphyrinogen synthase 2) Length = 313 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 198 PPLGAGALELPCRNSSRYLLDLHASLAN 281 PP+GAG L L CR R L++ ++L + Sbjct: 198 PPIGAGILALQCREGDRALIEAVSALGD 225
>ARAA_ECOL6 (Q8FL89) L-arabinose isomerase (EC 5.3.1.4)| Length = 500 Score = 29.6 bits (65), Expect = 3.2 Identities = 20/58 (34%), Positives = 28/58 (48%) Frame = +2 Query: 35 VSKLVDIQVPYRLHKNNLDDFKSIAQK*KLPISDITRS*YANIQW*KQVDLILSATAW 208 V+ L+D+ YRL N +D K+ KLP+ AN W Q DL ++ AW Sbjct: 393 VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPV--------ANALWKAQPDLPSASEAW 442
>PPX1_ARATH (P48529) Serine/threonine-protein phosphatase PP-X isozyme 1 (EC| 3.1.3.16) Length = 305 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/53 (26%), Positives = 27/53 (50%) Frame = +1 Query: 196 SHRLVLEPWNFHVETQVVTFWTCMQVSLTCQLAKLAPIMRMSNA*NEPIPVID 354 +H+LV+E + + ++Q+VT W+ C +A I+ + N+ V D Sbjct: 235 AHQLVMEGYKWMFDSQIVTVWSAPNYCYRC--GNVASILELDENLNKEFRVFD 285
>HEM3_LISMO (Q8Y6X5) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 309 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 192 CQPPLGAGALELPCRNSSRYLLDLHASL 275 C P +G GAL + CR S + + D+ S+ Sbjct: 194 CLPAVGQGALAIECRESDQQIRDMLTSI 221
>HEM3_LISMF (Q71ZB2) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 309 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 192 CQPPLGAGALELPCRNSSRYLLDLHASL 275 C P +G GAL + CR S + + D+ S+ Sbjct: 194 CLPAVGQGALAIECRESDQQIRDMLTSI 221
>PPX2_ARATH (P48528) Serine/threonine-protein phosphatase PP-X isozyme 2 (EC| 3.1.3.16) Length = 305 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/53 (26%), Positives = 26/53 (49%) Frame = +1 Query: 196 SHRLVLEPWNFHVETQVVTFWTCMQVSLTCQLAKLAPIMRMSNA*NEPIPVID 354 +H+LV+E + + +Q+VT W+ C +A I+ + N+ V D Sbjct: 235 AHQLVMEGYKWMFNSQIVTVWSAPNYCYRC--GNVAAILELDENLNKEFRVFD 285
>GLR2_CAEEL (Q10914) Glutamate receptor 2 precursor| Length = 977 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/43 (27%), Positives = 26/43 (60%) Frame = -2 Query: 207 QAVADSIRSTCFYHWIFAY*DLVMSDMGSFYFCAIDLKSSRLF 79 +A+ +S+ YH++F+ D+ +D+ F+F I++ R+F Sbjct: 256 RALEESVLVKKEYHYVFSNFDVDETDLSGFHFSLINITIFRIF 298
>SYW_BRUSU (P67587) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 355 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = +3 Query: 246 RYLLDLHASLANLPVSQVSPHYAYEQRLK*TDPCH 350 R DL ASLA+L V+++SP +E R DP H Sbjct: 290 RQFSDLKASLADLAVARLSP-ITHEMRRLVADPAH 323
>SYW_BRUME (P67586) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 355 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = +3 Query: 246 RYLLDLHASLANLPVSQVSPHYAYEQRLK*TDPCH 350 R DL ASLA+L V+++SP +E R DP H Sbjct: 290 RQFSDLKASLADLAVARLSP-ITHEMRRLVADPAH 323
>HEM3_LISIN (Q92BF8) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 309 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 192 CQPPLGAGALELPCRNSSRYLLDLHASL 275 C P +G GAL + CR + + D+ AS+ Sbjct: 194 CLPAVGQGALAIECRETDLQICDMLASI 221
>RNH2_NOVAD (Q2G794) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 196 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/67 (25%), Positives = 28/67 (41%) Frame = +3 Query: 150 NMQISSGRNKWILYCQPPLGAGALELPCRNSSRYLLDLHASLANLPVSQVSPHYAYEQRL 329 N+ R +W +P +G ALE PC +++ + H + PHY +E+ Sbjct: 105 NLTPHGRRPEWCWPARPIVGGDALE-PCISAASIIAKEHRDRLMREAALAHPHYGWERNA 163 Query: 330 K*TDPCH 350 P H Sbjct: 164 GYGTPEH 170 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,452,271 Number of Sequences: 219361 Number of extensions: 1289036 Number of successful extensions: 3139 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3082 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3138 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
