ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009005.1| Triticum aestivum clone wdk2c.pk018.g2:fis, full ... 92 1e-15
2gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 44 0.26
3gb|U51997.1| Caenorhabditis elegans cosmid F19G12, complete sequ... 40 4.1
4gb|AC168275.4| Mus musculus 10 BAC RP23-350O21 (Roswell Park Can... 40 4.1
5gb|AY524544.1| Streptomyces chrysomallus ectoine biosynthesis ge... 40 4.1
6gb|AC006330.5| Homo sapiens BAC clone RP11-229D13 from 7, comple... 40 4.1
7emb|AL132848.1|CEY47H10A Caenorhabditis elegans YAC Y47H10A, com... 40 4.1
8gb|AC122341.3| Mus musculus BAC clone RP23-355F8 from chromosome... 40 4.1
9gb|AC160638.6| Mus musculus BAC clone RP23-99K6 from chromosome ... 40 4.1
10gb|AF543417.1| Zea mays major facilitator superfamily antiporter... 40 4.1
11emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 4.1
12gb|AC113165.1| Homo sapiens chromosome 5 clone RP11-213E1, compl... 40 4.1
13gb|AC104119.2| Homo sapiens chromosome 5 clone RP11-34D23, compl... 40 4.1
14gb|AC006762.2| Caenorhabditis elegans cosmid Y42G9A, complete se... 40 4.1
15gb|AC006460.4| Homo sapiens BAC clone RP11-284E5 from 2, complet... 40 4.1
16gb|AC008050.6|AC008050 Homo sapiens chromosome 14 clone RP11-141... 40 4.1
17gb|AC011372.7| Homo sapiens chromosome 5 clone CTB-108B20, compl... 40 4.1
18gb|AC025715.3| Caenorhabditis elegans cosmid Y38F2AR, complete s... 40 4.1
19dbj|AK060649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.1
20gb|AC156387.5| Mus musculus 10 BAC RP24-396H15 (Roswell Park Can... 40 4.1
21emb|Z82260.1|CEC32H11 Caenorhabditis elegans Cosmid C32H11, comp... 40 4.1
22emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chr... 40 4.1

>gb|BT009005.1| Triticum aestivum clone wdk2c.pk018.g2:fis, full insert mRNA
           sequence
          Length = 1782

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                       
Query: 251 caccatggcgacgaggctcctccatccggcgccgacggctgcggccgcaccggcgggcgg 310
           ||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct: 818 caccacggcgacgaggctcctccagccggcgccgacggctgcggcggctccggcgggcgg 759

             
Query: 311 gg 312
           ||
Sbjct: 758 gg 757



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 63/69 (91%), Gaps = 4/69 (5%)
 Strand = Plus / Minus

                                                                       
Query: 109 tagtaacctatccaaatccatgcacagcatgcacgcacgcagctagtctccatcgatccg 168
           |||||||||||||||||||||||||| |||    |||||||||||||||||||||||| |
Sbjct: 949 tagtaacctatccaaatccatgcacaacat----gcacgcagctagtctccatcgatctg 894

                    
Query: 169 tcggtctca 177
           |||||||||
Sbjct: 893 tcggtctca 885



 Score = 46.1 bits (23), Expect = 0.067
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 208 tttcttcttcttacaagaggcac 230
           |||||||||||||||||||||||
Sbjct: 861 tttcttcttcttacaagaggcac 839



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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 285     acggctgcggccgcaccggcgg 306
               ||||||||||||||||||||||
Sbjct: 1323213 acggctgcggccgcaccggcgg 1323192



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>gb|U51997.1| Caenorhabditis elegans cosmid F19G12, complete sequence
          Length = 28537

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   gcttgaattttcttcttctt 219
             ||||||||||||||||||||
Sbjct: 27527 gcttgaattttcttcttctt 27546



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>gb|AC168275.4| Mus musculus 10 BAC RP23-350O21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 188458

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    agccagcaagaagtagtagt 112
             ||||||||||||||||||||
Sbjct: 83749 agccagcaagaagtagtagt 83768



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>gb|AY524544.1| Streptomyces chrysomallus ectoine biosynthesis gene cluster, complete
            sequence
          Length = 3366

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 287  ggctgcggccgcaccggcgg 306
            ||||||||||||||||||||
Sbjct: 1436 ggctgcggccgcaccggcgg 1455



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>gb|AC006330.5| Homo sapiens BAC clone RP11-229D13 from 7, complete sequence
          Length = 96299

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   cagcttgaattttcttcttc 217
             ||||||||||||||||||||
Sbjct: 55547 cagcttgaattttcttcttc 55566



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>emb|AL132848.1|CEY47H10A Caenorhabditis elegans YAC Y47H10A, complete sequence
          Length = 31521

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  gcttgaattttcttcttctt 219
            ||||||||||||||||||||
Sbjct: 5090 gcttgaattttcttcttctt 5109



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>gb|AC122341.3| Mus musculus BAC clone RP23-355F8 from chromosome 15, complete sequence
          Length = 198612

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   tagtaacctatccaaatcca 128
             ||||||||||||||||||||
Sbjct: 46161 tagtaacctatccaaatcca 46142



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>gb|AC160638.6| Mus musculus BAC clone RP23-99K6 from chromosome 15, complete sequence
          Length = 218870

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    tagtaacctatccaaatcca 128
              ||||||||||||||||||||
Sbjct: 173562 tagtaacctatccaaatcca 173543



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>gb|AF543417.1| Zea mays major facilitator superfamily antiporter (mfs2) mRNA,
            complete cds
          Length = 1629

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 124  atccatgcacagcatgcacgcacgcagc 151
            ||||||||| |||| |||||||||||||
Sbjct: 1404 atccatgcagagcacgcacgcacgcagc 1377



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 283     cgacggctgcggccgcaccg 302
               ||||||||||||||||||||
Sbjct: 1729844 cgacggctgcggccgcaccg 1729825



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>gb|AC113165.1| Homo sapiens chromosome 5 clone RP11-213E1, complete sequence
          Length = 140640

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  ctcccagcttgaattttctt 213
            ||||||||||||||||||||
Sbjct: 6124 ctcccagcttgaattttctt 6105



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>gb|AC104119.2| Homo sapiens chromosome 5 clone RP11-34D23, complete sequence
          Length = 168108

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   ctcccagcttgaattttctt 213
             ||||||||||||||||||||
Sbjct: 44528 ctcccagcttgaattttctt 44547



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>gb|AC006762.2| Caenorhabditis elegans cosmid Y42G9A, complete sequence
          Length = 30585

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   gcttgaattttcttcttctt 219
             ||||||||||||||||||||
Sbjct: 27384 gcttgaattttcttcttctt 27403



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>gb|AC006460.4| Homo sapiens BAC clone RP11-284E5 from 2, complete sequence
          Length = 193015

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   attttcttcttcttacaaga 225
             ||||||||||||||||||||
Sbjct: 73314 attttcttcttcttacaaga 73295



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>gb|AC008050.6|AC008050 Homo sapiens chromosome 14 clone RP11-141I24 map 14q24.3, complete
             sequence
          Length = 176975

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   aattttcttcttcttacaag 224
             ||||||||||||||||||||
Sbjct: 90430 aattttcttcttcttacaag 90449



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>gb|AC011372.7| Homo sapiens chromosome 5 clone CTB-108B20, complete sequence
          Length = 183330

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   tcctcccagcttgaattttc 211
             ||||||||||||||||||||
Sbjct: 25831 tcctcccagcttgaattttc 25812



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>gb|AC025715.3| Caenorhabditis elegans cosmid Y38F2AR, complete sequence
          Length = 97157

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 gcttgaattttcttcttctt 219
           ||||||||||||||||||||
Sbjct: 332 gcttgaattttcttcttctt 313



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>dbj|AK060649.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H01, full
           insert sequence
          Length = 1377

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 284 gacggctgcggccgcaccggcggg 307
           |||||||||||||| |||||||||
Sbjct: 997 gacggctgcggccggaccggcggg 974



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>gb|AC156387.5| Mus musculus 10 BAC RP24-396H15 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 230270

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    agccagcaagaagtagtagt 112
             ||||||||||||||||||||
Sbjct: 45590 agccagcaagaagtagtagt 45609



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>emb|Z82260.1|CEC32H11 Caenorhabditis elegans Cosmid C32H11, complete sequence
          Length = 31654

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   gcttgaattttcttcttctt 219
             ||||||||||||||||||||
Sbjct: 15590 gcttgaattttcttcttctt 15609



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>emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chromosome 4, complete
             sequence
          Length = 165700

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   gcttgaattttcttcttctt 219
             ||||||||||||||||||||
Sbjct: 94502 gcttgaattttcttcttctt 94521


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,684,018
Number of Sequences: 3902068
Number of extensions: 2684018
Number of successful extensions: 44860
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44790
Number of HSP's gapped (non-prelim): 69
length of query: 312
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 290
effective length of database: 17,147,199,772
effective search space: 4972687933880
effective search space used: 4972687933880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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