ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart49g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469542.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1334 Score = 119 bits (60), Expect = 1e-23 Identities = 90/100 (90%) Strand = Plus / Minus Query: 422 agtccctgaccttcacatcggcgtcttccccgtactggatgcagttgtcgatgtttgaca 481 ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||| Sbjct: 820 agtccctaaccttcacatctgcgtcttccccatactggatgcagttgtcgatgtgcgaca 761 Query: 482 gcacatactcaatgctgctctccttcctcaaatcaagtgg 521 ||||||||| |||||||||||| || || || |||||||| Sbjct: 760 gcacatactgaatgctgctctcttttcttaagtcaagtgg 721
>dbj|AK065183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D21, full insert sequence Length = 1188 Score = 119 bits (60), Expect = 1e-23 Identities = 90/100 (90%) Strand = Plus / Minus Query: 422 agtccctgaccttcacatcggcgtcttccccgtactggatgcagttgtcgatgtttgaca 481 ||||||| ||||||||||| |||||| |||| |||||||||||||||||||||| |||| Sbjct: 927 agtccctaaccttcacatctgcgtctaccccatactggatgcagttgtcgatgtgcgaca 868 Query: 482 gcacatactcaatgctgctctccttcctcaaatcaagtgg 521 ||||||||| |||||||||||| || || ||||||||||| Sbjct: 867 gcacatactgaatgctgctctcttttcttaaatcaagtgg 828
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 105 bits (53), Expect = 1e-19 Identities = 71/77 (92%) Strand = Plus / Minus Query: 422 agtccctgaccttcacatcggcgtcttccccgtactggatgcagttgtcgatgtttgaca 481 ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||| Sbjct: 28611477 agtccctaaccttcacatctgcgtcttccccatactggatgcagttgtcgatgtgcgaca 28611418 Query: 482 gcacatactcaatgctg 498 ||||||||| ||||||| Sbjct: 28611417 gcacatactgaatgctg 28611401 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 422 agtccctgaccttcacatcggcgtcttccccgtactggatgcagttgtcgatgtttgaca 481 ||||||| ||||||||||| |||||| |||| |||||||||||||||||||||| |||| Sbjct: 12508450 agtccctaaccttcacatctgcgtctaccccatactggatgcagttgtcgatgtgcgaca 12508509 Query: 482 gcacatactcaatgctg 498 ||||||||| ||||||| Sbjct: 12508510 gcacatactgaatgctg 12508526
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 105 bits (53), Expect = 1e-19 Identities = 71/77 (92%) Strand = Plus / Minus Query: 422 agtccctgaccttcacatcggcgtcttccccgtactggatgcagttgtcgatgtttgaca 481 ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||| Sbjct: 28702801 agtccctaaccttcacatctgcgtcttccccatactggatgcagttgtcgatgtgcgaca 28702742 Query: 482 gcacatactcaatgctg 498 ||||||||| ||||||| Sbjct: 28702741 gcacatactgaatgctg 28702725 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 422 agtccctgaccttcacatcggcgtcttccccgtactggatgcagttgtcgatgtttgaca 481 ||||||| ||||||||||| |||||| |||| |||||||||||||||||||||| |||| Sbjct: 12505213 agtccctaaccttcacatctgcgtctaccccatactggatgcagttgtcgatgtgcgaca 12505272 Query: 482 gcacatactcaatgctg 498 ||||||||| ||||||| Sbjct: 12505273 gcacatactgaatgctg 12505289
>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete sequence Length = 158839 Score = 105 bits (53), Expect = 1e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 422 agtccctgaccttcacatcggcgtcttccccgtactggatgcagttgtcgatgtttgaca 481 ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||| Sbjct: 87419 agtccctaaccttcacatctgcgtcttccccatactggatgcagttgtcgatgtgcgaca 87478 Query: 482 gcacatactcaatgctg 498 ||||||||| ||||||| Sbjct: 87479 gcacatactgaatgctg 87495
>gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1125B03, from chromosome 3, complete sequence Length = 124550 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 422 agtccctgaccttcacatcggcgtcttccccgtactggatgcagttgtcgatgtttgaca 481 ||||||| ||||||||||| |||||| |||| |||||||||||||||||||||| |||| Sbjct: 79491 agtccctaaccttcacatctgcgtctaccccatactggatgcagttgtcgatgtgcgaca 79432 Query: 482 gcacatactcaatgctg 498 ||||||||| ||||||| Sbjct: 79431 gcacatactgaatgctg 79415
>gb|BT018411.1| Zea mays clone EL01N0326H03.d mRNA sequence Length = 955 Score = 63.9 bits (32), Expect = 5e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 422 agtccctgaccttcacatcggcgtcttccccgtactggatgcagttgtcgatgtttgaca 481 |||||||||||||||| || || |||||||| |||||||| || ||||||| || | Sbjct: 671 agtccctgaccttcacgtctgcatcttccccatactggatacatgtgtcgatagaagata 612 Query: 482 gcacatactcaatgctgctctccttcctcaaatcaagtgg 521 ||||||| | |||||||| ||||| |||||||||||||| Sbjct: 611 gcacatattgtatgctgctttcctttctcaaatcaagtgg 572
>gb|AC092435.5| Homo sapiens BAC clone RP11-292D4 from 4, complete sequence Length = 122583 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 ggagcagaattggtgcattggc 142 |||||||||||||||||||||| Sbjct: 27504 ggagcagaattggtgcattggc 27525
>gb|BC057538.1| Danio rerio SHC SH2-domain binding protein 1, mRNA (cDNA clone MGC:66476 IMAGE:2601264), complete cds Length = 2822 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 gctgaccagaattcaccttgt 105 ||||||||||||||||||||| Sbjct: 1241 gctgaccagaattcaccttgt 1221
>ref|NM_199843.1| Danio rerio SHC SH2-domain binding protein 1 (shcbp1), mRNA Length = 2822 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 gctgaccagaattcaccttgt 105 ||||||||||||||||||||| Sbjct: 1241 gctgaccagaattcaccttgt 1221
>emb|AL442128.7| Human DNA sequence from clone RP11-365P13 on chromosome 13 Contains the 5' end of a novel gene (FLJ20093), an ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) (ADPRT) pseudogene, a novel gene and a CpG island, complete sequence Length = 155026 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 186 tgaggatgatttgtttaaaggcagt 210 |||||||| |||||||||||||||| Sbjct: 23770 tgaggatgttttgtttaaaggcagt 23746
>gb|AC099533.36| Pan troglodytes clone rp43-41g5, complete sequence Length = 226331 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 tacactattttaggtatttta 166 ||||||||||||||||||||| Sbjct: 171388 tacactattttaggtatttta 171408
>gb|AC007529.5| Homo sapiens 12p13 BAC RPCI11-69C13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147239 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 cgtgaggatgatttgtttaaa 204 ||||||||||||||||||||| Sbjct: 146375 cgtgaggatgatttgtttaaa 146395
>ref|XM_697044.1| PREDICTED: Danio rerio hypothetical protein LOC554973 (LOC554973), mRNA Length = 1953 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 gctgaccagaattcaccttgt 105 ||||||||||||||||||||| Sbjct: 1209 gctgaccagaattcaccttgt 1189
>emb|BX321892.13| Zebrafish DNA sequence from clone DKEYP-21D12 in linkage group 25, complete sequence Length = 195705 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 gctgaccagaattcaccttgt 105 ||||||||||||||||||||| Sbjct: 4871 gctgaccagaattcaccttgt 4851
>gb|AC021089.8| Homo sapiens chromosome 16 clone CTD-2264D9, complete sequence Length = 101882 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 cagatgcattctgtcttgttt 278 ||||||||||||||||||||| Sbjct: 40497 cagatgcattctgtcttgttt 40517
>emb|AL807247.10| Mouse DNA sequence from clone RP23-178D3 on chromosome 4, complete sequence Length = 184686 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 catacactattttaggtattt 164 ||||||||||||||||||||| Sbjct: 155370 catacactattttaggtattt 155350
>ref|XM_529487.1| PREDICTED: Pan troglodytes LOC451898 (LOC451898), mRNA Length = 689 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 cctcctcctcaggaatggag 423 |||||||||||||||||||| Sbjct: 450 cctcctcctcaggaatggag 431
>gb|AC005153.2| Homo sapiens PAC clone RP4-537P9 from 7, complete sequence Length = 124191 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 cataaggagacccacacatt 252 |||||||||||||||||||| Sbjct: 87205 cataaggagacccacacatt 87186
>gb|AC101872.7| Mus musculus chromosome 17, clone RP23-358C2, complete sequence Length = 202465 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 tctcctcccatggacccaca 353 |||||||||||||||||||| Sbjct: 146241 tctcctcccatggacccaca 146260
>gb|AC144428.1| Pan troglodytes BAC clone RP43-2C19 from 7, complete sequence Length = 208183 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 atctgacagactttccaaaa 53 |||||||||||||||||||| Sbjct: 9630 atctgacagactttccaaaa 9611
>gb|AC021032.9| Homo sapiens chromosome 10 clone RP11-180I22, complete sequence Length = 160635 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 ttcctcaaatcaagtggtat 524 |||||||||||||||||||| Sbjct: 118521 ttcctcaaatcaagtggtat 118502
>emb|AL627187.13| Mouse DNA sequence from clone RP23-319B15 on chromosome 11 Contains the 3' end of the Rnf130 gene for ring finger protein 130, a heterogeneous nuclear ribonucleoprotein A family pseudogene, a novel gene, genes 2700008N14Rik and 3010026O09Rik, the Sqstm1 gene for sequestosome 1, the Mgat4b gene for mannoside acetylglucosaminyltransferase 4 isoenzyme B, the Ltc4s gene for leukotriene C4 synthase and four CpG islands, complete sequence Length = 201654 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 cctcctcctcaggaatggag 423 |||||||||||||||||||| Sbjct: 154470 cctcctcctcaggaatggag 154451
>gb|AC145871.4| Pan troglodytes BAC clone RP43-6N15 from chromosome 7, complete sequence Length = 230197 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 cataaggagacccacacatt 252 |||||||||||||||||||| Sbjct: 117487 cataaggagacccacacatt 117506
>dbj|AK039734.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330099J10 product:similar to Serologically defined breast cancer antigen NY-BR-15-like protein [Homo sapiens], full insert sequence Length = 1980 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 ggttaatttgttgcttctgc 385 |||||||||||||||||||| Sbjct: 1434 ggttaatttgttgcttctgc 1415
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ttgcttctgcttgatcaaaa 395 |||||||||||||||||||| Sbjct: 1389991 ttgcttctgcttgatcaaaa 1390010
>gb|AF051934.2|AF051934 Homo sapiens chromosome 21 clone PAC 220P20 map 21q22.2, complete sequence Length = 144474 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 tcttccccgtactggatgcagttg 468 |||||||| ||||||||||||||| Sbjct: 92236 tcttccccctactggatgcagttg 92213
>gb|AC087884.18| Homo sapiens 12 BAC RP11-416A17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 196742 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 cctcctcctcaggaatggag 423 |||||||||||||||||||| Sbjct: 160994 cctcctcctcaggaatggag 160975
>gb|AC145938.4| Pan troglodytes BAC clone RP43-18H20 from chromosome 7, complete sequence Length = 178210 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 atctgacagactttccaaaa 53 |||||||||||||||||||| Sbjct: 146504 atctgacagactttccaaaa 146485
>gb|AC091533.27| Mus musculus strain C57BL/6J chromosome 11 clone rp23-30n4, complete sequence Length = 192628 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 cctcctcctcaggaatggag 423 |||||||||||||||||||| Sbjct: 101187 cctcctcctcaggaatggag 101206
>emb|AL772343.17| Mouse DNA sequence from clone RP23-196N14 on chromosome 4, complete sequence Length = 154059 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 gcacatactcaatgctgctc 501 |||||||||||||||||||| Sbjct: 44402 gcacatactcaatgctgctc 44421
>emb|AJ229042.1|HS229042 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22, segment 2/3 Length = 348050 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 tcttccccgtactggatgcagttg 468 |||||||| ||||||||||||||| Sbjct: 138346 tcttccccctactggatgcagttg 138369
>emb|AL163268.2|HS21C068 Homo sapiens chromosome 21 segment HS21C068 Length = 340000 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 tcttccccgtactggatgcagttg 468 |||||||| ||||||||||||||| Sbjct: 60731 tcttccccctactggatgcagttg 60708
>emb|AL160192.3|CNS01RGU Human chromosome 14 DNA sequence BAC R-226P1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 185228 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ctagcgcctccaaaatataa 74 |||||||||||||||||||| Sbjct: 85388 ctagcgcctccaaaatataa 85407
>emb|AL135998.6|CNS01DVO Human chromosome 14 DNA sequence BAC R-137H15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 165871 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 acaatctgacagactttcca 50 |||||||||||||||||||| Sbjct: 55237 acaatctgacagactttcca 55218
>emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-898B23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 201794 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 attctttgcagatgcattct 269 |||||||||||||||||||| Sbjct: 26150 attctttgcagatgcattct 26131
>emb|CT486002.9| Mouse DNA sequence from clone RP23-396G8 on chromosome 17, complete sequence Length = 220042 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 tctcctcccatggacccaca 353 |||||||||||||||||||| Sbjct: 81537 tctcctcccatggacccaca 81556
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ttgcttctgcttgatcaaaa 395 |||||||||||||||||||| Sbjct: 2837467 ttgcttctgcttgatcaaaa 2837448
>gb|AF064477.1|HS2NRAMP3 Homo sapiens natural resistance-associated macrophage protein 2 (NRAMP2) gene, exon 3 Length = 2540 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 cctcctcctcaggaatggag 423 |||||||||||||||||||| Sbjct: 1893 cctcctcctcaggaatggag 1874
>gb|AC153524.3| Mus musculus 10 BAC RP23-349H12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 167574 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ggttaatttgttgcttctgc 385 |||||||||||||||||||| Sbjct: 50038 ggttaatttgttgcttctgc 50057
>dbj|AB015355.1| Homo sapiens NRAMP2 gene for natural resistance-associated macrophage protein 2, complete cds Length = 43999 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 cctcctcctcaggaatggag 423 |||||||||||||||||||| Sbjct: 21027 cctcctcctcaggaatggag 21008 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,213,548 Number of Sequences: 3902068 Number of extensions: 5213548 Number of successful extensions: 89257 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89041 Number of HSP's gapped (non-prelim): 215 length of query: 524 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 501 effective length of database: 17,143,297,704 effective search space: 8588792149704 effective search space used: 8588792149704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
