ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor 31 2.4
2LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor 30 4.0
3AGGF1_HUMAN (Q8N302) Angiogenic factor with G patch and FHA doma... 29 9.0
4LAMA_DROME (Q00174) Laminin alpha chain precursor 29 9.0
5DZIP1_MOUSE (Q8BMD2) Zinc finger protein DZIP1 (DAZ-interacting ... 29 9.0
6LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) ... 29 9.0

>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = -3

Query: 228  CL*HTSGPDCSSC----FSMRILRSWCMHVSCTCTPC 130
            CL HT+GP C  C    +   +L   C    C CTPC
Sbjct: 1994 CLRHTTGPRCEICAPGFYGNALLPGNC--TRCDCTPC 2028



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>LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor|
          Length = 3718

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = -3

Query: 228  CL*HTSGPDCSSC----FSMRILRSWCMHVSCTCTPC 130
            CL HT+GP C  C    +   +L   C    C C+PC
Sbjct: 1996 CLRHTTGPHCERCAPGFYGNALLPGNC--TRCDCSPC 2030



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>AGGF1_HUMAN (Q8N302) Angiogenic factor with G patch and FHA domains 1|
           (Angiogenic factor VG5Q) (Vasculogenesis gene on 5q)
           (hVG5Q)
          Length = 714

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/56 (23%), Positives = 30/56 (53%)
 Frame = +2

Query: 143 VQDTCIHQDLNIRMLKQELQSGPEVCYKQRPPRSEGPSCFRVSQAPFHRNLNRRTN 310
           V+ T  +++ N   +K++ + G  + +K  PP+   P+     ++P H N++  T+
Sbjct: 302 VEHTSCNEEENFANMKKKAKIG--IHHKNSPPKVTVPTSGNTIESPLHENISNSTS 355



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>LAMA_DROME (Q00174) Laminin alpha chain precursor|
          Length = 3712

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
 Frame = -3

Query: 294 RFLWNGACETLKQEGPS----LRGGRCL*HTSGPDCSSCFSMRILRSWCMHVSC---TCT 136
           R + NG  +T   + P     +   RC  HT G  C+ C      + W  + +     C 
Sbjct: 272 RCMCNGHADTCDVKDPKSPVRILACRCQHHTCGIQCNECCPGFEQKKWRQNTNARPFNCE 331

Query: 135 PCT*FGYSS 109
           PC   G+S+
Sbjct: 332 PCNCHGHSN 340



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>DZIP1_MOUSE (Q8BMD2) Zinc finger protein DZIP1 (DAZ-interacting protein 1|
           homolog)
          Length = 852

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 164 QDLNIRMLKQELQSGPEVCYKQRPPRSEGPSCFRVSQA 277
           +D +I  L++E   G ++  ++ PP    PSC +V +A
Sbjct: 777 EDWDISSLEEEKSLGSKIEQREPPPAKRDPSCTQVQRA 814



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>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s|
            chain)
          Length = 1798

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -3

Query: 231  RCL*HTSGPDCSSC---FSMRILRSWCMHVSCTC 139
            RCL HT GP C+ C   F  +  R  C    CTC
Sbjct: 1009 RCLHHTEGPHCAHCKPGFHGQAARQSCHR--CTC 1040


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,136,508
Number of Sequences: 219361
Number of extensions: 1401816
Number of successful extensions: 3626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3626
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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