>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 70       caagaacatctgttgaaatgcat 92
                |||||||||||||||||||||||
Sbjct: 32164406 caagaacatctgttgaaatgcat 32164384

>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0403C05
          Length = 151085

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 70    caagaacatctgttgaaatgcat 92
             |||||||||||||||||||||||
Sbjct: 35159 caagaacatctgttgaaatgcat 35137

>gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome 7, complete sequence
          Length = 165569

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 253    ttcttgctttagagtctcacag 274
              ||||||||||||||||||||||
Sbjct: 103786 ttcttgctttagagtctcacag 103807

>gb|AC006063.1|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Roswell Park Cancer Institute Human
              PAC Library) complete sequence
          Length = 150001

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 356    attctggagaaaagaagaaaaa 377
              ||||||||||||||||||||||
Sbjct: 113765 attctggagaaaagaagaaaaa 113744

>gb|AF217490.1|AF217491S3 Homo sapiens fragile 16D oxido reductase (FOR) gene, exons 8, 9, and
             partial cds
          Length = 270752

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 257   tgctttagagtctcacaggct 277
             |||||||||||||||||||||
Sbjct: 20155 tgctttagagtctcacaggct 20175

>gb|AY623109.1| Homo sapiens TAF1 RNA polymerase II, TATA box binding protein
             (TBP)-associated factor, 250kDa (TAF1) gene, complete cds
          Length = 100711

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 316   aaagaaaactccataaattcatttacaaa 344
             ||||| |||||| ||||||||||||||||
Sbjct: 30330 aaagataactccctaaattcatttacaaa 30302

>gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete sequence
          Length = 127223

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 357   ttctggagaaaagaagaaaaa 377
             |||||||||||||||||||||
Sbjct: 10964 ttctggagaaaagaagaaaaa 10984

>gb|AC109134.2| Homo sapiens chromosome 16 clone CTD-2343L8, complete sequence
          Length = 147101

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 257    tgctttagagtctcacaggct 277
              |||||||||||||||||||||
Sbjct: 116106 tgctttagagtctcacaggct 116126

>emb|CR388421.11| Zebrafish DNA sequence from clone CH211-73B10 in linkage group 20,
              complete sequence
          Length = 147762

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 76     catctgttgaaatgcatctca 96
              |||||||||||||||||||||
Sbjct: 142076 catctgttgaaatgcatctca 142056

>emb|AL590762.1|HSXDPA Homo sapiens chromosome X  sequence from 6 PACs 1 BAC and 1 cosmid,
              region GJB1-DXS559 map Xq13.1; segment 1/2, complete
              sequence
          Length = 305000

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 316    aaagaaaactccataaattcatttacaaa 344
              ||||| |||||| ||||||||||||||||
Sbjct: 236165 aaagataactccctaaattcatttacaaa 236137

>gb|AC108829.13| Mus musculus chromosome 3, clone RP23-159D18, complete sequence
          Length = 184470

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    aaaagaaaactccataaatt 334
              ||||||||||||||||||||
Sbjct: 102212 aaaagaaaactccataaatt 102193

>gb|AC121942.2| Mus musculus chromosome 13 clone RP24-211D12, complete sequence
          Length = 164932

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   agcaagaactgcagtcaggg 208
             ||||||||||||||||||||
Sbjct: 52838 agcaagaactgcagtcaggg 52819

>ref|XM_637333.1| Dictyostelium discoideum hypothetical protein (DDB0205517), partial
           mRNA
          Length = 3090

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 328 ataaattcatttacaaactc 347
           ||||||||||||||||||||
Sbjct: 415 ataaattcatttacaaactc 434

>gb|AC169083.1| Mus musculus chromosome 3, clone RP23-28D7, complete sequence
          Length = 215143

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   aaaagaaaactccataaatt 334
             ||||||||||||||||||||
Sbjct: 79407 aaaagaaaactccataaatt 79426

>gb|AC165280.3| Mus musculus chromosome 3, clone RP23-389C4, complete sequence
          Length = 201348

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   aaaagaaaactccataaatt 334
             ||||||||||||||||||||
Sbjct: 24797 aaaagaaaactccataaatt 24816

>gb|AC113501.7| Mus musculus chromosome 6, clone RP23-367E20, complete sequence
          Length = 196932

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 184   gctaaagcaagaactgcagtcagg 207
             |||||||||||||||||| |||||
Sbjct: 98002 gctaaagcaagaactgcactcagg 98025

>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence
          Length = 172016

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     cttttgctttcatgatctca 56
              ||||||||||||||||||||
Sbjct: 108911 cttttgctttcatgatctca 108930

>emb|Z77249.2|HS358H7 Human DNA sequence from clone RP3-358H7 on chromosome X Contains a
              DEAD-box protein pseudogene and the gene for a novel
              E2F-like protein (LOC51270), complete sequence
          Length = 148864

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 357    ttctggagaaaagaagaaaaaggc 380
              |||||||||||||||||| |||||
Sbjct: 118671 ttctggagaaaagaagaacaaggc 118694

>emb|AL603704.9| Human DNA sequence from clone RP11-512M18 on chromosome 9, complete
             sequence
          Length = 41237

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   gagaaaagaagaaaaaggcc 381
             ||||||||||||||||||||
Sbjct: 17116 gagaaaagaagaaaaaggcc 17135

>emb|AL035667.12|HS805C22 Human DNA sequence from clone RP4-805C22 on chromosome 20q13.2-13.32
            Contains the 3' end of the gene for downstream of
            tyrosine kinase 5 (DOK5) protein, complete sequence
          Length = 135391

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   aacatctgttgaaatgcatc 93
            ||||||||||||||||||||
Sbjct: 4913 aacatctgttgaaatgcatc 4932

>emb|AL596182.28| Mouse DNA sequence from clone RP23-303F24 on chromosome 11 Contains a
             pseudogene similar to part of glyceraldehyde-3-phosphate
             dehydrogenase (Gapd), the Irf1 gene for interferon
             regulatory factor 1, a novel gene, the Slc22a5 gene for
             solute carrier family 22 (organic cation transporter)
             member 5, a ribosomal protein L27a (Rpl27a) pseudogene, a
             cyclin-dependent kinase 4 (Cdk4) pseudogene and two CpG
             islands, complete sequence
          Length = 191494

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   ccttcttgctttagagtctc 270
             ||||||||||||||||||||
Sbjct: 40439 ccttcttgctttagagtctc 40420

>gb|AC182768.3| Pan troglodytes BAC clone CH251-178I17 from chromosome 7, complete
              sequence
          Length = 186886

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    acatgcatacaccaggacct 171
              ||||||||||||||||||||
Sbjct: 169317 acatgcatacaccaggacct 169336

>dbj|AK092550.1| Homo sapiens cDNA FLJ35231 fis, clone PROST2001465
          Length = 2046

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 152  acatgcatacaccaggacct 171
            ||||||||||||||||||||
Sbjct: 1307 acatgcatacaccaggacct 1326

>gb|AC106872.5| Homo sapiens BAC clone RP11-366M4 from 4, complete sequence
          Length = 174535

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    aacatctgttgaaatgcatc 93
             ||||||||||||||||||||
Sbjct: 56410 aacatctgttgaaatgcatc 56391

>gb|AC023772.22| Homo sapiens chromosome 4, clone RP11-634F16, complete sequence
          Length = 191312

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     aacatctgttgaaatgcatc 93
              ||||||||||||||||||||
Sbjct: 176063 aacatctgttgaaatgcatc 176044

>gb|AC006388.3| Homo sapiens BAC clone CTA-363M4 from 7, complete sequence
          Length = 59241

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   acatgcatacaccaggacct 171
             ||||||||||||||||||||
Sbjct: 44180 acatgcatacaccaggacct 44161

>dbj|AK080949.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
            enriched library, clone:B430217B02 product:interferon
            regulatory factor 1, full insert sequence
          Length = 3074

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  ccttcttgctttagagtctc 270
            ||||||||||||||||||||
Sbjct: 2460 ccttcttgctttagagtctc 2441

>dbj|AK053162.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
           library, clone:E030022C11 product:hypothetical protein,
           full insert sequence
          Length = 916

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 ccttcttgctttagagtctc 270
           ||||||||||||||||||||
Sbjct: 685 ccttcttgctttagagtctc 704

>gb|AC153151.4| Mus musculus BAC clone RP23-82K6 from chromosome 13, complete sequence
          Length = 164635

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    agcaagaactgcagtcaggg 208
              ||||||||||||||||||||
Sbjct: 140097 agcaagaactgcagtcaggg 140078

>emb|AL929167.10| Mouse DNA sequence from clone RP23-5F14 on chromosome 2, complete
              sequence
          Length = 148751

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 325    tccataaattcatttacaaactca 348
              |||||||||||||||| |||||||
Sbjct: 108011 tccataaattcatttagaaactca 107988

>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 322     aactccataaattcatttac 341
               ||||||||||||||||||||
Sbjct: 3934690 aactccataaattcatttac 3934709

>gb|AC002546.1|AC002546 Homo sapiens chromosome 17, clone 193h18, complete sequence
          Length = 106420

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   tctggagaaaagaagaaaaa 377
             ||||||||||||||||||||
Sbjct: 67124 tctggagaaaagaagaaaaa 67105

>gb|AC139326.5| Mus musculus BAC clone RP24-341F20 from chromosome 3, complete sequence
          Length = 141290

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    aaaagaaaactccataaatt 334
              ||||||||||||||||||||
Sbjct: 131845 aaaagaaaactccataaatt 131864


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,448,848
Number of Sequences: 3902068
Number of extensions: 5448848
Number of successful extensions: 124817
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124670
Number of HSP's gapped (non-prelim): 147
length of query: 524
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 501
effective length of database: 17,143,297,704
effective search space: 8588792149704
effective search space used: 8588792149704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)