ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart49f12 |
|---|---|
| Clone Library Name | barley_pub |
>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) Length = 389 Score = 60.5 bits (145), Expect = 1e-09 Identities = 29/30 (96%), Positives = 30/30 (100%) Frame = -2 Query: 355 DARNAFYQSTIKQGDFLLNRIQKLSRVIDL 266 DARNAFYQ+TIKQGDFLLNRIQKLSRVIDL Sbjct: 360 DARNAFYQATIKQGDFLLNRIQKLSRVIDL 389
>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6| Length = 387 Score = 57.0 bits (136), Expect = 1e-08 Identities = 27/30 (90%), Positives = 29/30 (96%) Frame = -2 Query: 355 DARNAFYQSTIKQGDFLLNRIQKLSRVIDL 266 DA+NA YQ+TIKQGDFLLNRIQKLSRVIDL Sbjct: 358 DAKNALYQATIKQGDFLLNRIQKLSRVIDL 387
>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (Rpn7 protein) Length = 389 Score = 45.8 bits (107), Expect = 3e-05 Identities = 22/30 (73%), Positives = 26/30 (86%) Frame = -2 Query: 355 DARNAFYQSTIKQGDFLLNRIQKLSRVIDL 266 D +N YQ+TIKQGD LLNRIQKLSRVI++ Sbjct: 360 DNKNWQYQATIKQGDLLLNRIQKLSRVINI 389
>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) Length = 389 Score = 44.7 bits (104), Expect = 6e-05 Identities = 20/30 (66%), Positives = 26/30 (86%) Frame = -2 Query: 355 DARNAFYQSTIKQGDFLLNRIQKLSRVIDL 266 D++N YQ TIK+GD LLNR+QKLSRVI++ Sbjct: 360 DSKNWQYQETIKKGDLLLNRVQKLSRVINM 389
>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) (Proteasome regulatory particle subunit p44S10) (Phosphonoformate immuno-associated protein 4) (Breast cancer-associated protein SGA-113M) Length = 389 Score = 44.7 bits (104), Expect = 6e-05 Identities = 20/30 (66%), Positives = 26/30 (86%) Frame = -2 Query: 355 DARNAFYQSTIKQGDFLLNRIQKLSRVIDL 266 D++N YQ TIK+GD LLNR+QKLSRVI++ Sbjct: 360 DSKNWQYQETIKKGDLLLNRVQKLSRVINM 389
>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit rpn-7) Length = 410 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/29 (62%), Positives = 24/29 (82%) Frame = -2 Query: 355 DARNAFYQSTIKQGDFLLNRIQKLSRVID 269 D++N Y++ IK GD LLNRIQKL+RVI+ Sbjct: 381 DSKNHLYKAVIKDGDILLNRIQKLARVIN 409
>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7| Length = 409 Score = 33.9 bits (76), Expect = 0.10 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -2 Query: 355 DARNAFYQSTIKQGDFLLNRIQKLSRVIDL*AFFV 251 D +N YQ +KQGD LLN++QK + AF V Sbjct: 375 DEKNRQYQEVVKQGDVLLNKLQKYQATVMRGAFKV 409
>SLIT1_RAT (O88279) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1531 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/66 (24%), Positives = 25/66 (37%) Frame = +3 Query: 123 PLFPFDRLKRKMQYCQYSAGTKAKSCKGSLGRVGLCQGAAPNLTKKAYRSMTRDSFCMRF 302 P+ F R++R CQ + C+G+ G CQG K + SF Sbjct: 1460 PVRDFHRVQRGYAICQTTRPLSWVECRGACPGQGCCQGLRLKRRKLTFECSDGTSFAEEV 1519 Query: 303 SRKSPC 320 + + C Sbjct: 1520 EKPTKC 1525
>SLIT1_MOUSE (Q80TR4) Slit homolog 1 protein precursor (Slit-1)| Length = 1531 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/66 (24%), Positives = 25/66 (37%) Frame = +3 Query: 123 PLFPFDRLKRKMQYCQYSAGTKAKSCKGSLGRVGLCQGAAPNLTKKAYRSMTRDSFCMRF 302 P+ F R++R CQ + C+G+ G CQG K + SF Sbjct: 1460 PVRDFHRVQRGYAICQTTRPLSWVECRGACPGQGCCQGLRLKRRKLTFECSDGTSFAEEV 1519 Query: 303 SRKSPC 320 + + C Sbjct: 1520 EKPTKC 1525
>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7| Length = 429 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 355 DARNAFYQSTIKQGDFLLNRIQKLSRVIDL 266 D +NA Y +KQGD LL ++QK + L Sbjct: 394 DNKNAQYHLLVKQGDGLLTKLQKYGAAVRL 423
>SLIT1_HUMAN (O75093) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1534 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/66 (24%), Positives = 25/66 (37%) Frame = +3 Query: 123 PLFPFDRLKRKMQYCQYSAGTKAKSCKGSLGRVGLCQGAAPNLTKKAYRSMTRDSFCMRF 302 P+ F +++R CQ + C+GS G CQG K + SF Sbjct: 1463 PVRDFHQVQRGYAICQTTRPLSWVECRGSCPGQGCCQGLRLKRRKFTFECSDGTSFAEEV 1522 Query: 303 SRKSPC 320 + + C Sbjct: 1523 EKPTKC 1528
>UGGG_SCHPO (Q09140) UDP-glucose:glycoprotein glucosyltransferase precursor (EC| 2.4.1.-) (UDP--Glc:glycoprotein glucosyltransferase) (UGT) Length = 1448 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = +1 Query: 28 RGNNHLQTMVCNSLDPYS*VTSQI---LRFLKKNYPSFPLID*NAKCNTA 168 R + HLQ ++ +SLDP S V + + L+FLKK+ + +C +A Sbjct: 739 RSSKHLQEILNSSLDPSSGVVNDMDKALKFLKKSKAVVKELGLTGECKSA 788
>TCF17_HUMAN (O60765) Zinc finger protein 354A (Transcription factor 17) (Zinc| finger protein eZNF) Length = 605 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 108 FKKKLPLFPFDRLKRKMQYCQYSAGTKAKSCKGSL 212 F ++ LF ++ + C+Y+ G KA SC SL Sbjct: 307 FSRRSGLFIHQKIHAEENPCKYNPGRKASSCSTSL 341
>KR511_HUMAN (Q6L8G4) Keratin-associated protein 5-11 (Keratin-associated| protein 5.11) (Ultrahigh sulfur keratin-associated protein 5.11) Length = 156 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%) Frame = +3 Query: 165 CQYSAGTKAK--SCKGSLGRVGLCQGAAPNLTKKAYRSMTRDSFCMRFSRKSPC 320 C G+K SC S G G C + N K S SFC + S PC Sbjct: 57 CGSCGGSKGGCGSCGSSKGGCGSCGCSQSNCCKPCCSSSGCGSFCCQSSCSKPC 110
>VL2_PCPV1 (Q02276) Minor capsid protein L2| Length = 463 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = -2 Query: 235 PWHNPTLPKLPLQDFALVPAEYWQYCILRFNRSKGKRGSFF 113 P +NP +P LP+ + ++++ + L R + KR S F Sbjct: 417 PPYNPVIPSLPITPIFISGSQFYLHPSLYLARKRRKRVSLF 457
>RA6I1_MOUSE (Q6PAL8) Rab6-interacting protein 1 (Rab6IP1)| Length = 1287 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -1 Query: 227 QPYPTQASLTRLCFGSCGVLAVLHFAFQSIKGKEG*FFFKNLRI 96 +P + SLT L G CG+++ L AFQ G + FKN+ I Sbjct: 1125 KPEKERGSLTLLLCGECGLVSALEQAFQ--HGFKSPRLFKNVFI 1166
>RA6I1_HUMAN (Q6IQ26) Rab6-interacting protein 1 (Rab6IP1)| Length = 1287 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -1 Query: 227 QPYPTQASLTRLCFGSCGVLAVLHFAFQSIKGKEG*FFFKNLRI 96 +P + SLT L G CG+++ L AFQ G + FKN+ I Sbjct: 1125 KPEKERGSLTLLLCGECGLVSALEQAFQ--HGFKSPRLFKNVFI 1166 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,180,611 Number of Sequences: 219361 Number of extensions: 1023141 Number of successful extensions: 2366 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2317 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2366 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
