Clone Name | rbart49f12 |
---|---|
Clone Library Name | barley_pub |
>gb|AY107400.1| Zea mays PCO125916 mRNA sequence Length = 1443 Score = 101 bits (51), Expect = 1e-18 Identities = 78/87 (89%) Strand = Plus / Minus Query: 262 cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321 |||||||||| || ||||| ||||||||||| ||||| ||||||||||||||||| |||| Sbjct: 1215 cctacaggtcgataactcgtgacagcttctggatgcggttcagcaggaagtctccttgct 1156 Query: 322 tgatggtcgactggtagaaggcattcc 348 ||||||| | |||||||||||| |||| Sbjct: 1155 tgatggttgcctggtagaaggcgttcc 1129
>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09, complete sequence Length = 120583 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 262 cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321 ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||| Sbjct: 41133 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 41074 Query: 322 tgatggtcgactggtagaaggcatt 346 ||||||| | ||||||||| ||||| Sbjct: 41073 tgatggttgcctggtagaaagcatt 41049
>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15, complete sequence Length = 150864 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 262 cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321 ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||| Sbjct: 107946 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 107887 Query: 322 tgatggtcgactggtagaaggcatt 346 ||||||| | ||||||||| ||||| Sbjct: 107886 tgatggttgcctggtagaaagcatt 107862
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 262 cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321 ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||| Sbjct: 24218721 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 24218662 Query: 322 tgatggtcgactggtagaaggcatt 346 ||||||| | ||||||||| ||||| Sbjct: 24218661 tgatggttgcctggtagaaagcatt 24218637
>dbj|AK104327.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F11, full insert sequence Length = 1510 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 262 cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321 ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||| Sbjct: 1292 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 1233 Query: 322 tgatggtcgactggtagaaggcatt 346 ||||||| | ||||||||| ||||| Sbjct: 1232 tgatggttgcctggtagaaagcatt 1208
>dbj|AK068887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002M12, full insert sequence Length = 1515 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 262 cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321 ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||| Sbjct: 1297 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 1238 Query: 322 tgatggtcgactggtagaaggcatt 346 ||||||| | ||||||||| ||||| Sbjct: 1237 tgatggttgcctggtagaaagcatt 1213
>emb|AL442114.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811E11, complete sequence Length = 59348 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 262 cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321 ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||| Sbjct: 13176 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 13117 Query: 322 tgatggtcgactggtagaaggcatt 346 ||||||| | ||||||||| ||||| Sbjct: 13116 tgatggttgcctggtagaaagcatt 13092
>dbj|AB037149.1| Oryza sativa (japonica cultivar-group) OsRPN7 mRNA for 26S proteasome regulatory particle non-ATPase subunit7, complete cds Length = 1547 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 262 cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321 ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||| Sbjct: 1255 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 1196 Query: 322 tgatggtcgactggtagaaggcatt 346 ||||||| | ||||||||| ||||| Sbjct: 1195 tgatggttgcctggtagaaagcatt 1171
>ref|XM_472939.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1170 Score = 95.6 bits (48), Expect = 9e-17 Identities = 75/84 (89%) Strand = Plus / Minus Query: 263 ctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgctt 322 |||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||| Sbjct: 1170 ctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgctt 1111 Query: 323 gatggtcgactggtagaaggcatt 346 |||||| | ||||||||| ||||| Sbjct: 1110 gatggttgcctggtagaaagcatt 1087
>gb|BT016822.1| Zea mays clone Contig655 mRNA sequence Length = 1636 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 264 tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 323 |||||||||||||| || || |||||||| ||||| ||||||| |||||| || |||||| Sbjct: 1292 tacaggtcaatgacccgtgaaagcttctggatgcggttcagcaagaagtccccttgcttg 1233 Query: 324 atggtcgactggtagaaggcattcc 348 ||||||| ||||||||| ||||||| Sbjct: 1232 atggtcgcctggtagaaagcattcc 1208
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 264 tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 323 |||| |||||||||||| ||||| ||||| ||||| ||||||| |||||| || |||||| Sbjct: 23484974 tacaagtcaatgactcgtgacagtttctggatgcggttcagcaagaagtccccttgcttg 23484915 Query: 324 atggtcgactggtagaaggcattcc 348 ||||||| |||||||||||||||| Sbjct: 23484914 atggtcgcttggtagaaggcattcc 23484890
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 264 tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 323 |||| |||||||||||| ||||| ||||| ||||| ||||||| |||||| || |||||| Sbjct: 50657 tacaagtcaatgactcgtgacagtttctggatgcggttcagcaagaagtccccttgcttg 50598 Query: 324 atggtcgactggtagaaggcattcc 348 ||||||| |||||||||||||||| Sbjct: 50597 atggtcgcttggtagaaggcattcc 50573
>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1653_F07, complete sequence Length = 110109 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 264 tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 323 |||| |||||||||||| ||||| ||||| ||||| ||||||| |||||| || |||||| Sbjct: 103649 tacaagtcaatgactcgtgacagtttctggatgcggttcagcaagaagtccccttgcttg 103590 Query: 324 atggtcgactggtagaaggcattcc 348 ||||||| |||||||||||||||| Sbjct: 103589 atggtcgcttggtagaaggcattcc 103565
>dbj|AK071215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084I15, full insert sequence Length = 1371 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 264 tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 323 |||| |||||||||||| ||||| ||||| ||||| ||||||| |||||| || |||||| Sbjct: 1199 tacaagtcaatgactcgtgacagtttctggatgcggttcagcaagaagtccccttgcttg 1140 Query: 324 atggtcgactggtagaaggcattcc 348 ||||||| |||||||||||||||| Sbjct: 1139 atggtcgcttggtagaaggcattcc 1115
>gb|AY104803.1| Zea mays PCO064157 mRNA sequence Length = 1631 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 264 tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 323 |||||||||||||| || || |||||||| ||||| ||||||| |||||| || |||||| Sbjct: 1307 tacaggtcaatgacccgtgaaagcttctggatgcggttcagcaagaagtccccttgcttg 1248 Query: 324 atggtcgactggtagaaggcattcc 348 ||||||| ||||||||| ||||||| Sbjct: 1247 atggtcgcctggtagaaagcattcc 1223
>gb|BC108599.1| Xenopus laevis cDNA clone MGC:131117 IMAGE:7983247, complete cds Length = 1368 Score = 42.1 bits (21), Expect = 1.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 288 ttctgtatgcgattcagcaggaagtctccctgcttgatggt 328 ||||| ||||| || ||||| | |||||||||||||||||| Sbjct: 1225 ttctggatgcggttgagcagcaggtctccctgcttgatggt 1185
>emb|CR383676.21| Zebrafish DNA sequence from clone CH211-276I12 in linkage group 14, complete sequence Length = 164241 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 tggaataaaaaatggatgaat 23 ||||||||||||||||||||| Sbjct: 4867 tggaataaaaaatggatgaat 4847
>emb|AL596180.8| Mouse DNA sequence from clone RP23-243J8 on chromosome 11 Contains the Akap1 gene for A kinase (PRKA) anchor protein 1, complete sequence Length = 76410 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 gtgccaaggagctgctccaaa 247 ||||||||||||||||||||| Sbjct: 17559 gtgccaaggagctgctccaaa 17539
>dbj|AK033468.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030214A21 product:unclassifiable, full insert sequence Length = 1684 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 gtgccaaggagctgctccaaa 247 ||||||||||||||||||||| Sbjct: 636 gtgccaaggagctgctccaaa 616
>ref|XM_518639.1| PREDICTED: Pan troglodytes MDN1, midasin homolog (LOC462886), mRNA Length = 16110 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 ttggaataaaaaatggatgaattc 25 |||| ||||||||||||||||||| Sbjct: 5023 ttggtataaaaaatggatgaattc 5000
>ref|XM_615168.2| PREDICTED: Bos taurus similar to Midasin (MIDAS-containing protein), transcript variant 1 (LOC535163), mRNA Length = 16554 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 ttggaataaaaaatggatgaattc 25 |||| ||||||||||||||||||| Sbjct: 4918 ttggtataaaaaatggatgaattc 4895
>ref|XM_865593.1| PREDICTED: Bos taurus similar to Midasin (MIDAS-containing protein), transcript variant 2 (LOC535163), mRNA Length = 16773 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 ttggaataaaaaatggatgaattc 25 |||| ||||||||||||||||||| Sbjct: 5137 ttggtataaaaaatggatgaattc 5114
>ref|NM_014611.1| Homo sapiens MDN1, midasin homolog (yeast) (MDN1), mRNA Length = 17400 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 ttggaataaaaaatggatgaattc 25 |||| ||||||||||||||||||| Sbjct: 5253 ttggtataaaaaatggatgaattc 5230
>gb|AC113244.19| Mus musculus chromosome 19, clone RP23-172E2, complete sequence Length = 224351 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cttgtaagggaagcttgggt 215 |||||||||||||||||||| Sbjct: 64959 cttgtaagggaagcttgggt 64940
>ref|XM_862875.1| PREDICTED: Canis familiaris similar to Midasin (MIDAS-containing protein), transcript variant 2 (LOC474995), mRNA Length = 16583 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 ttggaataaaaaatggatgaattc 25 |||| ||||||||||||||||||| Sbjct: 4918 ttggtataaaaaatggatgaattc 4895
>ref|XM_532232.2| PREDICTED: Canis familiaris similar to Midasin (MIDAS-containing protein), transcript variant 1 (LOC474995), mRNA Length = 16802 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 ttggaataaaaaatggatgaattc 25 |||| ||||||||||||||||||| Sbjct: 5137 ttggtataaaaaatggatgaattc 5114
>gb|AY531879.1| Borrelia miyamotoi 23S ribosomal RNA gene, partial sequence; hydrolase (cof), hypoxanthine-guanine phosphoribosyltransferase (hpt), adenylosuccinate synthetase (purA), adenylosuccinate lyase (purB), and methylpurine-DNA glycosylase (mag) genes, complete cds; tRNA-Ile and tRNA-Ala genes, complete sequence; and 16S ribosomal RNA gene, partial sequence Length = 6235 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ggaataaaaaatggatgaat 23 |||||||||||||||||||| Sbjct: 3393 ggaataaaaaatggatgaat 3412
>emb|AL136973.7| Human DNA sequence from clone RP3-414O8 on chromosome 6, complete sequence Length = 62443 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 aagtcaaatcctcagatttt 109 |||||||||||||||||||| Sbjct: 4255 aagtcaaatcctcagatttt 4274
>emb|AL096678.8|HSDJ122O8 Human DNA sequence from clone RP1-122O8 on chromosome 6q14.2-16.1 Contains the 3' end of the ANKRD6 gene for ankyrin repeat domain 6 (KIAA0957), the 5' end of a novel gene, the 3' end of the MDN1 gene for midasin homolog (yeast) (KIAA0301), a novel gene and a CpG island, complete sequence Length = 140211 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 ttggaataaaaaatggatgaattc 25 |||| ||||||||||||||||||| Sbjct: 123269 ttggtataaaaaatggatgaattc 123292
>gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, complete sequence Length = 203330 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 aggaaccaaagcaaagtctt 198 |||||||||||||||||||| Sbjct: 68660 aggaaccaaagcaaagtctt 68679
>gb|AF503925.1| Homo sapiens midasin (MDN1) mRNA, complete cds Length = 17400 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 ttggaataaaaaatggatgaattc 25 |||| ||||||||||||||||||| Sbjct: 5253 ttggtataaaaaatggatgaattc 5230
>gb|AC074198.6| Homo sapiens BAC clone RP11-75A5 from 4, complete sequence Length = 182178 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 aaccaaagcaaagtcttgta 201 |||||||||||||||||||| Sbjct: 114285 aaccaaagcaaagtcttgta 114266
>gb|AF525215.1| Takifugu rubripes Mx (Mx) gene, complete cds Length = 80367 Score = 40.1 bits (20), Expect = 4.7 Identities = 47/56 (83%) Strand = Plus / Plus Query: 273 atgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttgatggt 328 ||||||| |||||||||||| | | |||||||| ||||| |||| ||||||||| Sbjct: 62436 atgactctcgacagcttctggactctgttcagcagcaagtcgcccttcttgatggt 62491
>emb|BX248514.3| Zebrafish DNA sequence from clone CH211-237A6 in linkage group 1, complete sequence Length = 165693 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ttgaaacgcaaaatgcaata 163 |||||||||||||||||||| Sbjct: 153875 ttgaaacgcaaaatgcaata 153856
>dbj|AP002499.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-107P10, complete sequence Length = 176429 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ttggaataaaaaatggatga 21 |||||||||||||||||||| Sbjct: 39004 ttggaataaaaaatggatga 38985
>gb|AC148053.3| Carollia perspicillata clone 594J14, complete sequence Length = 125844 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ttgggtagggtagggttgtg 229 |||||||||||||||||||| Sbjct: 59904 ttgggtagggtagggttgtg 59923
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold Length = 1501503 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ttgggtagggtagggttgtg 229 |||||||||||||||||||| Sbjct: 1112122 ttgggtagggtagggttgtg 1112141 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,988,684 Number of Sequences: 3902068 Number of extensions: 2988684 Number of successful extensions: 55782 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 55698 Number of HSP's gapped (non-prelim): 85 length of query: 356 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 334 effective length of database: 17,147,199,772 effective search space: 5727164723848 effective search space used: 5727164723848 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)