ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY107400.1| Zea mays PCO125916 mRNA sequence 101 1e-18
2emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4,... 98 2e-17
3emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4,... 98 2e-17
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
5dbj|AK104327.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
6dbj|AK068887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
7emb|AL442114.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 98 2e-17
8dbj|AB037149.1| Oryza sativa (japonica cultivar-group) OsRPN7 mR... 98 2e-17
9ref|XM_472939.1| Oryza sativa (japonica cultivar-group), predic... 96 9e-17
10gb|BT016822.1| Zea mays clone Contig655 mRNA sequence 90 6e-15
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
12dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
13dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
14dbj|AK071215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
15gb|AY104803.1| Zea mays PCO064157 mRNA sequence 90 6e-15
16gb|BC108599.1| Xenopus laevis cDNA clone MGC:131117 IMAGE:798324... 42 1.2
17emb|CR383676.21| Zebrafish DNA sequence from clone CH211-276I12 ... 42 1.2
18emb|AL596180.8| Mouse DNA sequence from clone RP23-243J8 on chro... 42 1.2
19dbj|AK033468.1| Mus musculus adult male colon cDNA, RIKEN full-l... 42 1.2
20ref|XM_518639.1| PREDICTED: Pan troglodytes MDN1, midasin homolo... 40 4.7
21ref|XM_615168.2| PREDICTED: Bos taurus similar to Midasin (MIDAS... 40 4.7
22ref|XM_865593.1| PREDICTED: Bos taurus similar to Midasin (MIDAS... 40 4.7
23ref|NM_014611.1| Homo sapiens MDN1, midasin homolog (yeast) (MDN... 40 4.7
24gb|AC113244.19| Mus musculus chromosome 19, clone RP23-172E2, co... 40 4.7
25ref|XM_862875.1| PREDICTED: Canis familiaris similar to Midasin ... 40 4.7
26ref|XM_532232.2| PREDICTED: Canis familiaris similar to Midasin ... 40 4.7
27gb|AY531879.1| Borrelia miyamotoi 23S ribosomal RNA gene, partia... 40 4.7
28emb|AL136973.7| Human DNA sequence from clone RP3-414O8 on chrom... 40 4.7
29emb|AL096678.8|HSDJ122O8 Human DNA sequence from clone RP1-122O8... 40 4.7
30gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, co... 40 4.7
31gb|AF503925.1| Homo sapiens midasin (MDN1) mRNA, complete cds 40 4.7
32gb|AC074198.6| Homo sapiens BAC clone RP11-75A5 from 4, complete... 40 4.7
33gb|AF525215.1| Takifugu rubripes Mx (Mx) gene, complete cds 40 4.7
34emb|BX248514.3| Zebrafish DNA sequence from clone CH211-237A6 in... 40 4.7
35dbj|AP002499.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.7
36gb|AC148053.3| Carollia perspicillata clone 594J14, complete seq... 40 4.7
37gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 40 4.7

>gb|AY107400.1| Zea mays PCO125916 mRNA sequence
          Length = 1443

 Score =  101 bits (51), Expect = 1e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321
            |||||||||| || ||||| ||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 1215 cctacaggtcgataactcgtgacagcttctggatgcggttcagcaggaagtctccttgct 1156

                                       
Query: 322  tgatggtcgactggtagaaggcattcc 348
            ||||||| | |||||||||||| ||||
Sbjct: 1155 tgatggttgcctggtagaaggcgttcc 1129



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>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09,
             complete sequence
          Length = 120583

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                         
Query: 262   cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321
             ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 41133 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 41074

                                      
Query: 322   tgatggtcgactggtagaaggcatt 346
             ||||||| | ||||||||| |||||
Sbjct: 41073 tgatggttgcctggtagaaagcatt 41049



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>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15,
              complete sequence
          Length = 150864

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                          
Query: 262    cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321
              ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 107946 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 107887

                                       
Query: 322    tgatggtcgactggtagaaggcatt 346
              ||||||| | ||||||||| |||||
Sbjct: 107886 tgatggttgcctggtagaaagcatt 107862



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                            
Query: 262      cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321
                ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 24218721 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 24218662

                                         
Query: 322      tgatggtcgactggtagaaggcatt 346
                ||||||| | ||||||||| |||||
Sbjct: 24218661 tgatggttgcctggtagaaagcatt 24218637



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>dbj|AK104327.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F11, full
            insert sequence
          Length = 1510

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321
            ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 1292 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 1233

                                     
Query: 322  tgatggtcgactggtagaaggcatt 346
            ||||||| | ||||||||| |||||
Sbjct: 1232 tgatggttgcctggtagaaagcatt 1208



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>dbj|AK068887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002M12, full
            insert sequence
          Length = 1515

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321
            ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 1297 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 1238

                                     
Query: 322  tgatggtcgactggtagaaggcatt 346
            ||||||| | ||||||||| |||||
Sbjct: 1237 tgatggttgcctggtagaaagcatt 1213



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>emb|AL442114.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811E11, complete
             sequence
          Length = 59348

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                         
Query: 262   cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321
             ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 13176 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 13117

                                      
Query: 322   tgatggtcgactggtagaaggcatt 346
             ||||||| | ||||||||| |||||
Sbjct: 13116 tgatggttgcctggtagaaagcatt 13092



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>dbj|AB037149.1| Oryza sativa (japonica cultivar-group) OsRPN7 mRNA for 26S proteasome
            regulatory particle non-ATPase subunit7, complete cds
          Length = 1547

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 321
            ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 1255 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 1196

                                     
Query: 322  tgatggtcgactggtagaaggcatt 346
            ||||||| | ||||||||| |||||
Sbjct: 1195 tgatggttgcctggtagaaagcatt 1171



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>ref|XM_472939.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1170

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                        
Query: 263  ctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgctt 322
            |||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||||
Sbjct: 1170 ctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgctt 1111

                                    
Query: 323  gatggtcgactggtagaaggcatt 346
            |||||| | ||||||||| |||||
Sbjct: 1110 gatggttgcctggtagaaagcatt 1087



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>gb|BT016822.1| Zea mays clone Contig655 mRNA sequence
          Length = 1636

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                        
Query: 264  tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 323
            |||||||||||||| || || |||||||| ||||| ||||||| |||||| || ||||||
Sbjct: 1292 tacaggtcaatgacccgtgaaagcttctggatgcggttcagcaagaagtccccttgcttg 1233

                                     
Query: 324  atggtcgactggtagaaggcattcc 348
            ||||||| ||||||||| |||||||
Sbjct: 1232 atggtcgcctggtagaaagcattcc 1208



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                            
Query: 264      tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 323
                |||| |||||||||||| ||||| ||||| ||||| ||||||| |||||| || ||||||
Sbjct: 23484974 tacaagtcaatgactcgtgacagtttctggatgcggttcagcaagaagtccccttgcttg 23484915

                                         
Query: 324      atggtcgactggtagaaggcattcc 348
                |||||||  ||||||||||||||||
Sbjct: 23484914 atggtcgcttggtagaaggcattcc 23484890



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>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1791_B03
          Length = 166214

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                         
Query: 264   tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 323
             |||| |||||||||||| ||||| ||||| ||||| ||||||| |||||| || ||||||
Sbjct: 50657 tacaagtcaatgactcgtgacagtttctggatgcggttcagcaagaagtccccttgcttg 50598

                                      
Query: 324   atggtcgactggtagaaggcattcc 348
             |||||||  ||||||||||||||||
Sbjct: 50597 atggtcgcttggtagaaggcattcc 50573



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>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1653_F07, complete sequence
          Length = 110109

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                          
Query: 264    tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 323
              |||| |||||||||||| ||||| ||||| ||||| ||||||| |||||| || ||||||
Sbjct: 103649 tacaagtcaatgactcgtgacagtttctggatgcggttcagcaagaagtccccttgcttg 103590

                                       
Query: 324    atggtcgactggtagaaggcattcc 348
              |||||||  ||||||||||||||||
Sbjct: 103589 atggtcgcttggtagaaggcattcc 103565



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>dbj|AK071215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084I15, full
            insert sequence
          Length = 1371

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                        
Query: 264  tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 323
            |||| |||||||||||| ||||| ||||| ||||| ||||||| |||||| || ||||||
Sbjct: 1199 tacaagtcaatgactcgtgacagtttctggatgcggttcagcaagaagtccccttgcttg 1140

                                     
Query: 324  atggtcgactggtagaaggcattcc 348
            |||||||  ||||||||||||||||
Sbjct: 1139 atggtcgcttggtagaaggcattcc 1115



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>gb|AY104803.1| Zea mays PCO064157 mRNA sequence
          Length = 1631

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                        
Query: 264  tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 323
            |||||||||||||| || || |||||||| ||||| ||||||| |||||| || ||||||
Sbjct: 1307 tacaggtcaatgacccgtgaaagcttctggatgcggttcagcaagaagtccccttgcttg 1248

                                     
Query: 324  atggtcgactggtagaaggcattcc 348
            ||||||| ||||||||| |||||||
Sbjct: 1247 atggtcgcctggtagaaagcattcc 1223



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>gb|BC108599.1| Xenopus laevis cDNA clone MGC:131117 IMAGE:7983247, complete cds
          Length = 1368

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 288  ttctgtatgcgattcagcaggaagtctccctgcttgatggt 328
            ||||| ||||| || ||||| | ||||||||||||||||||
Sbjct: 1225 ttctggatgcggttgagcagcaggtctccctgcttgatggt 1185



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>emb|CR383676.21| Zebrafish DNA sequence from clone CH211-276I12 in linkage group 14,
            complete sequence
          Length = 164241

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 3    tggaataaaaaatggatgaat 23
            |||||||||||||||||||||
Sbjct: 4867 tggaataaaaaatggatgaat 4847



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>emb|AL596180.8| Mouse DNA sequence from clone RP23-243J8 on chromosome 11 Contains the
             Akap1 gene for A kinase (PRKA) anchor protein 1, complete
             sequence
          Length = 76410

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 227   gtgccaaggagctgctccaaa 247
             |||||||||||||||||||||
Sbjct: 17559 gtgccaaggagctgctccaaa 17539



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>dbj|AK033468.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030214A21 product:unclassifiable, full
           insert sequence
          Length = 1684

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 227 gtgccaaggagctgctccaaa 247
           |||||||||||||||||||||
Sbjct: 636 gtgccaaggagctgctccaaa 616



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>ref|XM_518639.1| PREDICTED: Pan troglodytes MDN1, midasin homolog (LOC462886), mRNA
          Length = 16110

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 2    ttggaataaaaaatggatgaattc 25
            |||| |||||||||||||||||||
Sbjct: 5023 ttggtataaaaaatggatgaattc 5000



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>ref|XM_615168.2| PREDICTED: Bos taurus similar to Midasin (MIDAS-containing protein),
            transcript variant 1 (LOC535163), mRNA
          Length = 16554

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 2    ttggaataaaaaatggatgaattc 25
            |||| |||||||||||||||||||
Sbjct: 4918 ttggtataaaaaatggatgaattc 4895



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>ref|XM_865593.1| PREDICTED: Bos taurus similar to Midasin (MIDAS-containing protein),
            transcript variant 2 (LOC535163), mRNA
          Length = 16773

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 2    ttggaataaaaaatggatgaattc 25
            |||| |||||||||||||||||||
Sbjct: 5137 ttggtataaaaaatggatgaattc 5114



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>ref|NM_014611.1| Homo sapiens MDN1, midasin homolog (yeast) (MDN1), mRNA
          Length = 17400

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 2    ttggaataaaaaatggatgaattc 25
            |||| |||||||||||||||||||
Sbjct: 5253 ttggtataaaaaatggatgaattc 5230



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>gb|AC113244.19| Mus musculus chromosome 19, clone RP23-172E2, complete sequence
          Length = 224351

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   cttgtaagggaagcttgggt 215
             ||||||||||||||||||||
Sbjct: 64959 cttgtaagggaagcttgggt 64940



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>ref|XM_862875.1| PREDICTED: Canis familiaris similar to Midasin (MIDAS-containing
            protein), transcript variant 2 (LOC474995), mRNA
          Length = 16583

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 2    ttggaataaaaaatggatgaattc 25
            |||| |||||||||||||||||||
Sbjct: 4918 ttggtataaaaaatggatgaattc 4895



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>ref|XM_532232.2| PREDICTED: Canis familiaris similar to Midasin (MIDAS-containing
            protein), transcript variant 1 (LOC474995), mRNA
          Length = 16802

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 2    ttggaataaaaaatggatgaattc 25
            |||| |||||||||||||||||||
Sbjct: 5137 ttggtataaaaaatggatgaattc 5114



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>gb|AY531879.1| Borrelia miyamotoi 23S ribosomal RNA gene, partial sequence;
            hydrolase (cof), hypoxanthine-guanine
            phosphoribosyltransferase (hpt), adenylosuccinate
            synthetase (purA), adenylosuccinate lyase (purB), and
            methylpurine-DNA glycosylase (mag) genes, complete cds;
            tRNA-Ile and tRNA-Ala genes, complete sequence; and 16S
            ribosomal RNA gene, partial sequence
          Length = 6235

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    ggaataaaaaatggatgaat 23
            ||||||||||||||||||||
Sbjct: 3393 ggaataaaaaatggatgaat 3412



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>emb|AL136973.7| Human DNA sequence from clone RP3-414O8 on chromosome 6, complete
            sequence
          Length = 62443

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   aagtcaaatcctcagatttt 109
            ||||||||||||||||||||
Sbjct: 4255 aagtcaaatcctcagatttt 4274



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>emb|AL096678.8|HSDJ122O8 Human DNA sequence from clone RP1-122O8 on chromosome 6q14.2-16.1
              Contains the 3' end of the ANKRD6 gene for ankyrin repeat
              domain 6 (KIAA0957), the 5' end of a novel gene, the 3' end
              of the MDN1 gene for midasin homolog (yeast) (KIAA0301), a
              novel gene and a CpG island, complete sequence
          Length = 140211

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      ttggaataaaaaatggatgaattc 25
              |||| |||||||||||||||||||
Sbjct: 123269 ttggtataaaaaatggatgaattc 123292



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>gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, complete sequence
          Length = 203330

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   aggaaccaaagcaaagtctt 198
             ||||||||||||||||||||
Sbjct: 68660 aggaaccaaagcaaagtctt 68679



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>gb|AF503925.1| Homo sapiens midasin (MDN1) mRNA, complete cds
          Length = 17400

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 2    ttggaataaaaaatggatgaattc 25
            |||| |||||||||||||||||||
Sbjct: 5253 ttggtataaaaaatggatgaattc 5230



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>gb|AC074198.6| Homo sapiens BAC clone RP11-75A5 from 4, complete sequence
          Length = 182178

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    aaccaaagcaaagtcttgta 201
              ||||||||||||||||||||
Sbjct: 114285 aaccaaagcaaagtcttgta 114266



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>gb|AF525215.1| Takifugu rubripes Mx (Mx) gene, complete cds
          Length = 80367

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 273   atgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttgatggt 328
             ||||||| |||||||||||| |  |  |||||||| ||||| |||| |||||||||
Sbjct: 62436 atgactctcgacagcttctggactctgttcagcagcaagtcgcccttcttgatggt 62491



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>emb|BX248514.3| Zebrafish DNA sequence from clone CH211-237A6 in linkage group 1,
              complete sequence
          Length = 165693

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    ttgaaacgcaaaatgcaata 163
              ||||||||||||||||||||
Sbjct: 153875 ttgaaacgcaaaatgcaata 153856



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>dbj|AP002499.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-107P10, complete
             sequence
          Length = 176429

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     ttggaataaaaaatggatga 21
             ||||||||||||||||||||
Sbjct: 39004 ttggaataaaaaatggatga 38985



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>gb|AC148053.3| Carollia perspicillata clone 594J14, complete sequence
          Length = 125844

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   ttgggtagggtagggttgtg 229
             ||||||||||||||||||||
Sbjct: 59904 ttgggtagggtagggttgtg 59923



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>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 210     ttgggtagggtagggttgtg 229
               ||||||||||||||||||||
Sbjct: 1112122 ttgggtagggtagggttgtg 1112141


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,988,684
Number of Sequences: 3902068
Number of extensions: 2988684
Number of successful extensions: 55782
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55698
Number of HSP's gapped (non-prelim): 85
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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