>ref|XM_507291.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0016N23.125
            mRNA
          Length = 1424

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 80/89 (89%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                        
Query: 255  cccgatctcggtgcgtaggtcctccacggcgcggcggagcatcccgctctccgcattcat 314
            ||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||| |||| 
Sbjct: 1063 cccgacctcggcgcgcaggtcctccacggcgcggcgcagcatcccgctctccgcgttca- 1005

                                         
Query: 315  ccgcctccagctgtcgcctcatcagcgag 343
             |||||||||||| ||||||| |||||||
Sbjct: 1004 gcgcctccagctgccgcctcaccagcgag 976

>ref|XM_483295.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1411

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 80/89 (89%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                        
Query: 255  cccgatctcggtgcgtaggtcctccacggcgcggcggagcatcccgctctccgcattcat 314
            ||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||| |||| 
Sbjct: 1049 cccgacctcggcgcgcaggtcctccacggcgcggcgcagcatcccgctctccgcgttca- 991

                                         
Query: 315  ccgcctccagctgtcgcctcatcagcgag 343
             |||||||||||| ||||||| |||||||
Sbjct: 990  gcgcctccagctgccgcctcaccagcgag 962

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 80/89 (89%), Gaps = 1/89 (1%)
 Strand = Plus / Plus

                                                                            
Query: 255      cccgatctcggtgcgtaggtcctccacggcgcggcggagcatcccgctctccgcattcat 314
                ||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||| |||| 
Sbjct: 25326130 cccgacctcggcgcgcaggtcctccacggcgcggcgcagcatcccgctctccgcgttca- 25326188

                                             
Query: 315      ccgcctccagctgtcgcctcatcagcgag 343
                 |||||||||||| ||||||| |||||||
Sbjct: 25326189 gcgcctccagctgccgcctcaccagcgag 25326217

>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0016N23
          Length = 147336

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 80/89 (89%), Gaps = 1/89 (1%)
 Strand = Plus / Plus

                                                                          
Query: 255    cccgatctcggtgcgtaggtcctccacggcgcggcggagcatcccgctctccgcattcat 314
              ||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||| |||| 
Sbjct: 101315 cccgacctcggcgcgcaggtcctccacggcgcggcgcagcatcccgctctccgcgttca- 101373

                                           
Query: 315    ccgcctccagctgtcgcctcatcagcgag 343
               |||||||||||| ||||||| |||||||
Sbjct: 101374 gcgcctccagctgccgcctcaccagcgag 101402

>dbj|AK106031.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D03, full
            insert sequence
          Length = 1411

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 80/89 (89%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                        
Query: 255  cccgatctcggtgcgtaggtcctccacggcgcggcggagcatcccgctctccgcattcat 314
            ||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||| |||| 
Sbjct: 1049 cccgacctcggcgcgcaggtcctccacggcgcggcgcagcatcccgctctccgcgttca- 991

                                         
Query: 315  ccgcctccagctgtcgcctcatcagcgag 343
             |||||||||||| ||||||| |||||||
Sbjct: 990  gcgcctccagctgccgcctcaccagcgag 962

>dbj|AK072063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110D22, full
            insert sequence
          Length = 1424

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 80/89 (89%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                        
Query: 255  cccgatctcggtgcgtaggtcctccacggcgcggcggagcatcccgctctccgcattcat 314
            ||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||| |||| 
Sbjct: 1063 cccgacctcggcgcgcaggtcctccacggcgcggcgcagcatcccgctctccgcgttca- 1005

                                         
Query: 315  ccgcctccagctgtcgcctcatcagcgag 343
             |||||||||||| ||||||| |||||||
Sbjct: 1004 gcgcctccagctgccgcctcaccagcgag 976

>gb|AC134175.1| Drosophila pseudoobscura  FOSMID DPSF1-548A9 (Children's Hospital
             Oakland Research Institute Drosophila pseudoobscura FOSMID
             Library) complete sequence
          Length = 45260

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 116   ctggcgctggcgctggcatcgc 137
             ||||||||||||||||||||||
Sbjct: 42225 ctggcgctggcgctggcatcgc 42204

>gb|DQ138775.1| Drosophila erecta voucher stock #14021-0224.0 CG13448 gene, partial
           cds
          Length = 522

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 96  caactcctcgcccacctcgtc 116
           |||||||||||||||||||||
Sbjct: 123 caactcctcgcccacctcgtc 143

>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
             OSJNBb0052C07, complete sequence
          Length = 154528

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 79    gcctccagcgccctcttcaactcctcgc 106
             |||||||| ||| |||||||||||||||
Sbjct: 82383 gcctccagtgccttcttcaactcctcgc 82356

>gb|AY273169.1| Rhodobacter capsulatus assimilatory nitrate reduction system,
           partial sequence
          Length = 17155

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 cgtctggcgctggcgctggc 132
           ||||||||||||||||||||
Sbjct: 441 cgtctggcgctggcgctggc 422

>ref|XR_002916.1| PREDICTED: Mus musculus similar to G1/S-specific cyclin-D3
           (LOC670307), mRNA
          Length = 1903

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtctggcgctggcgctggca 133
           ||||||||||||||||||||
Sbjct: 31  gtctggcgctggcgctggca 12

>gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, complete sequence
          Length = 286283

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    gtctggcgctggcgctggca 133
              ||||||||||||||||||||
Sbjct: 183939 gtctggcgctggcgctggca 183920

>ref|NM_001760.2| Homo sapiens cyclin D3 (CCND3), mRNA
          Length = 2095

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtctggcgctggcgctggca 133
           ||||||||||||||||||||
Sbjct: 83  gtctggcgctggcgctggca 64

>emb|AL160163.24| Human DNA sequence from clone RP5-973N23 on chromosome 6p12.3-21.2
              Contains the TRFP gene for TRF-proximal protein, the BYSL
              gene for bystin-like protein, the CCDN3 gene for cyclin D3,
              the 5' end of USP49 gene for ubiquitin specific protease 49
              and 3 CpG islands, complete sequence
          Length = 116506

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    gtctggcgctggcgctggca 133
              ||||||||||||||||||||
Sbjct: 107305 gtctggcgctggcgctggca 107324

>gb|AC164004.3| Mus musculus chromosome 5, clone RP23-58C20, complete sequence
          Length = 198872

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    gacctccctactgctgccac 236
              ||||||||||||||||||||
Sbjct: 148235 gacctccctactgctgccac 148254

>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 119     gcgctggcgctggcatcgct 138
               ||||||||||||||||||||
Sbjct: 1803478 gcgctggcgctggcatcgct 1803459

>gb|BC085763.1| Rattus norvegicus cyclin D3, mRNA (cDNA clone MGC:93643
           IMAGE:7189593), complete cds
          Length = 1941

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtctggcgctggcgctggca 133
           ||||||||||||||||||||
Sbjct: 21  gtctggcgctggcgctggca 2

>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 15      agtactgcagcaaccaagag 34
               ||||||||||||||||||||
Sbjct: 1259118 agtactgcagcaaccaagag 1259137

>emb|CR626223.1| full-length cDNA clone CS0DI005YB13 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1954

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtctggcgctggcgctggca 133
           ||||||||||||||||||||
Sbjct: 42  gtctggcgctggcgctggca 23

>gb|AF517525.1| Homo sapiens cyclin D3 (CCND3) gene, complete cds
          Length = 8987

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtctggcgctggcgctggca 133
           ||||||||||||||||||||
Sbjct: 968 gtctggcgctggcgctggca 949

>emb|CR613463.1| full-length cDNA clone CS0DF036YK12 of Fetal brain of Homo sapiens
           (human)
          Length = 1995

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtctggcgctggcgctggca 133
           ||||||||||||||||||||
Sbjct: 43  gtctggcgctggcgctggca 24

>emb|CR598524.1| full-length cDNA clone CS0DN002YO10 of Adult brain of Homo sapiens
           (human)
          Length = 1637

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtctggcgctggcgctggca 133
           ||||||||||||||||||||
Sbjct: 41  gtctggcgctggcgctggca 22

>dbj|AK165191.1| Mus musculus 12 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:E970027F08 product:cyclin D3,
           full insert sequence
          Length = 3860

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtctggcgctggcgctggca 133
           ||||||||||||||||||||
Sbjct: 130 gtctggcgctggcgctggca 111

>dbj|AK159503.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
           library, clone:I420022A14 product:cyclin D3, full insert
           sequence
          Length = 1900

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtctggcgctggcgctggca 133
           ||||||||||||||||||||
Sbjct: 23  gtctggcgctggcgctggca 4

>dbj|AK168290.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched
           library, clone:I730081N04 product:cyclin D3, full insert
           sequence
          Length = 1902

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtctggcgctggcgctggca 133
           ||||||||||||||||||||
Sbjct: 25  gtctggcgctggcgctggca 6

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 117     tggcgctggcgctggcatcg 136
               ||||||||||||||||||||
Sbjct: 7643668 tggcgctggcgctggcatcg 7643649

>dbj|AK064834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F19, full
            insert sequence
          Length = 1601

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 79   gcctccagcgccctcttcaactcctcgc 106
            |||||||| ||| |||||||||||||||
Sbjct: 1152 gcctccagtgccttcttcaactcctcgc 1125

>dbj|AK062257.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G09, full
            insert sequence
          Length = 1508

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 79   gcctccagcgccctcttcaactcctcgc 106
            |||||||| ||| |||||||||||||||
Sbjct: 1208 gcctccagtgccttcttcaactcctcgc 1181

>gb|AY110541.1| Zea mays CL4825_1 mRNA sequence
          Length = 837

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 116 ctggcgctggcgctggcatcgctg 139
           |||||||||||||||||| |||||
Sbjct: 111 ctggcgctggcgctggcagcgctg 134

>gb|AC102476.14| Mus musculus chromosome 5, clone RP24-396L12, complete sequence
          Length = 181047

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    gacctccctactgctgccac 236
              ||||||||||||||||||||
Sbjct: 133069 gacctccctactgctgccac 133050

>gb|U43844.1|MMU43844 Mus musculus cyclin D3 gene, complete cds
          Length = 8267

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 114  gtctggcgctggcgctggca 133
            ||||||||||||||||||||
Sbjct: 1701 gtctggcgctggcgctggca 1682

>gb|U47285.1|HSU47285 Human cyclin D3 gene, promoter region
          Length = 1023

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtctggcgctggcgctggca 133
           ||||||||||||||||||||
Sbjct: 936 gtctggcgctggcgctggca 917

>gb|U07224.1|BMU07224 Brugia malayi a2 (IV) basement membrane collagen gene, complete cds
          Length = 13007

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    aaaatccaaaaattagtact 20
            ||||||||||||||||||||
Sbjct: 7304 aaaatccaaaaattagtact 7323

>gb|AC163709.3| Gallus gallus BAC clone CH261-60F22 from chromosome ul, complete
             sequence
          Length = 210984

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   gctccttcccaccgccccga 174
             ||||||||||||||||||||
Sbjct: 98880 gctccttcccaccgccccga 98899

>gb|U49935.1|RNU49935 Rattus norvegicus cyclin D3 gene, partial cds
          Length = 3325

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 114  gtctggcgctggcgctggca 133
            ||||||||||||||||||||
Sbjct: 2785 gtctggcgctggcgctggca 2766

>emb|AL807811.9| Mouse DNA sequence from clone RP23-247I1 on chromosome 4, complete
              sequence
          Length = 249021

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    gtctggcgctggcgctggca 133
              ||||||||||||||||||||
Sbjct: 222679 gtctggcgctggcgctggca 222698

>gb|M92287.1|HUMCYCD3A Homo sapiens cyclin D3 (CCND3) mRNA, complete cds
          Length = 2042

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtctggcgctggcgctggca 133
           ||||||||||||||||||||
Sbjct: 83  gtctggcgctggcgctggca 64

>gb|M38435.1|BRPANTCL Brugia malayi probe pBmCW3
          Length = 3253

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    aaaatccaaaaattagtact 20
            ||||||||||||||||||||
Sbjct: 2916 aaaatccaaaaattagtact 2935


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,313,075
Number of Sequences: 3902068
Number of extensions: 2313075
Number of successful extensions: 73244
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73051
Number of HSP's gapped (non-prelim): 187
length of query: 355
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 333
effective length of database: 17,147,199,772
effective search space: 5710017524076
effective search space used: 5710017524076
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)