ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TIP12_ORYSA (Q94CS9) Probable aquaporin TIP1.2 (Tonoplast intrin... 34 0.082
2SYV_BUCAI (P57447) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 4.5

>TIP12_ORYSA (Q94CS9) Probable aquaporin TIP1.2 (Tonoplast intrinsic protein|
           1.2) (OsTIP1.2)
          Length = 252

 Score = 34.3 bits (77), Expect = 0.082
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = -2

Query: 300 FIGQRPHEQLPTAEY 256
           FIGQRPH+QLPTA+Y
Sbjct: 238 FIGQRPHDQLPTADY 252



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>SYV_BUCAI (P57447) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 955

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = +1

Query: 28  INLDHGIEAFITEDVHQDKRLFLTDSHTV-----YPEF---LKDKRVTMKLNWL 165
           + L H I  FITE + Q  +L    S        +PE+   L DK++ +++NW+
Sbjct: 747 LKLAHPIMPFITETIWQRIKLIQNISEKTIMLQDFPEYNHKLFDKKILVQMNWM 800


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,512,964
Number of Sequences: 219361
Number of extensions: 525592
Number of successful extensions: 880
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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