Clone Name | rbart49f10 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | TIP12_ORYSA (Q94CS9) Probable aquaporin TIP1.2 (Tonoplast intrin... | 34 | 0.082 | 2 | SYV_BUCAI (P57447) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... | 28 | 4.5 |
---|
>TIP12_ORYSA (Q94CS9) Probable aquaporin TIP1.2 (Tonoplast intrinsic protein| 1.2) (OsTIP1.2) Length = 252 Score = 34.3 bits (77), Expect = 0.082 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = -2 Query: 300 FIGQRPHEQLPTAEY 256 FIGQRPH+QLPTA+Y Sbjct: 238 FIGQRPHDQLPTADY 252
>SYV_BUCAI (P57447) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 955 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = +1 Query: 28 INLDHGIEAFITEDVHQDKRLFLTDSHTV-----YPEF---LKDKRVTMKLNWL 165 + L H I FITE + Q +L S +PE+ L DK++ +++NW+ Sbjct: 747 LKLAHPIMPFITETIWQRIKLIQNISEKTIMLQDFPEYNHKLFDKKILVQMNWM 800 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,512,964 Number of Sequences: 219361 Number of extensions: 525592 Number of successful extensions: 880 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 864 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 880 length of database: 80,573,946 effective HSP length: 76 effective length of database: 63,902,510 effective search space used: 1533660240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)