ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UROL1_HUMAN (Q5DID0) Uromodulin-like 1 precursor (Olfactorin) 27 9.4
2RLA0_METAC (Q8TI80) Acidic ribosomal protein P0 homolog (L10E) 27 9.4
3UBP7_HUMAN (Q93009) Ubiquitin carboxyl-terminal hydrolase 7 (EC ... 27 9.4
4TAOK2_RAT (Q9JLS3) Serine/threonine-protein kinase TAO2 (EC 2.7.... 27 9.4

>UROL1_HUMAN (Q5DID0) Uromodulin-like 1 precursor (Olfactorin)|
          Length = 1318

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 202 SFP*KASPGRPHTQPA--ERAVPRPTEHTGTSCTLGVDRSEATHGV 333
           +F    SPG P   PA  +   P P+   G S  +G DR+    GV
Sbjct: 585 NFTLSPSPGYPQGTPAAGQAWTPEPSPRRGGSNVVGYDRNNTGKGV 630



to top

>RLA0_METAC (Q8TI80) Acidic ribosomal protein P0 homolog (L10E)|
          Length = 347

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = +2

Query: 212 EKHRQADHIPNQQKEQCRAPQSILVHLVLWGLIGLRQLMAFHPTKLR 352
           E+    +HIP  +K++    + ++    ++G++G+  ++A    K+R
Sbjct: 3   EERHHTEHIPQWKKDEIENIKELIQSHKVFGMVGIEGILATKMQKIR 49



to top

>UBP7_HUMAN (Q93009) Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing
            protease 7) (Deubiquitinating enzyme 7)
            (Herpesvirus-associated ubiquitin-specific protease)
          Length = 1102

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 106  EIHQLSGEPFLLCVYRYQHHRLVPRRAESLL 14
            E+    G PFLL +++ +H R V +R +SLL
Sbjct: 998  EVFGTFGIPFLLRIHQGEHFREVMKRIQSLL 1028



to top

>TAOK2_RAT (Q9JLS3) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1)|
           (Thousand and one amino acid protein 2)
          Length = 1235

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 156 GTQFRYRHQWQPSLPFFPLKSIARPTTYPTSRKSSAAPHRAY 281
           G+   Y   +QP +   PL+  A P   PTS  SS+A  RAY
Sbjct: 423 GSDNLYDDPYQPEMTPGPLQPPAAP---PTSTSSSSARRRAY 461


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,905,695
Number of Sequences: 219361
Number of extensions: 1220987
Number of successful extensions: 3145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3145
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top