ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474584.1| Oryza sativa (japonica cultivar-group), predic... 96 1e-16
2gb|AY720933.1| Oryza sativa (indica cultivar-group) beta-cyanoal... 96 1e-16
3dbj|AK102512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
4gb|DQ471309.1| Malus x domestica beta-cyanoalanine synthase 2 mR... 82 1e-12
5gb|AY107771.1| Zea mays PCO121395 mRNA sequence 74 4e-10
6emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4,... 70 6e-09
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
8emb|AL442113.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 70 6e-09
9dbj|AB179752.1| Diospyros kaki DkCAS2 mRNA for beta-cyanoalanine... 68 2e-08
10gb|AY207389.1| Hevea brasiliensis latex beta-cyanoalanine syntha... 66 9e-08
11gb|AY207388.1| Hevea brasiliensis phloem beta-cyanoalanine synth... 66 9e-08
12gb|DQ471308.1| Malus x domestica beta-cyanoalanine synthase 1 mR... 62 1e-06
13dbj|AB179751.1| Diospyros kaki DkCAS1 mRNA for beta-cyanoalanine... 60 5e-06
14emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E ... 46 0.083
15dbj|AB029338.1| Solanum tuberosum PCAS-2 mRNA for beta-cyanoalan... 46 0.083
16emb|BX296532.7| Zebrafish DNA sequence from clone CH211-281C19 i... 44 0.33
17emb|BX784022.6| Zebrafish DNA sequence from clone CH211-152C8 in... 44 0.33
18gb|AC118696.14| Mus musculus chromosome 3, clone RP24-62O16, com... 42 1.3
19gb|AC161218.10| Mus musculus chromosome 7, clone RP24-161J8, com... 42 1.3
20gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
21gb|AY766094.1| Allium sativum cysteine synthase GCS3 (gcs3) mRNA... 42 1.3
22gb|AC116585.3| Mus musculus BAC clone RP23-358A16 from chromosom... 42 1.3
23emb|Z22784.1|MMTROPIB M.musculus troponin I gene 42 1.3
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
25gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
26gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 42 1.3
27emb|X72803.1|CTHIS C.thummi genes for histones H1, H2A, H3 and H4 40 5.1
28emb|AL669871.18| Mouse DNA sequence from clone RP23-48J15 on chr... 40 5.1
29gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Can... 40 5.1
30gb|AC021889.29| Homo sapiens 3 BAC RP11-554F8 (Roswell Park Canc... 40 5.1
31emb|CR846080.8| Zebrafish DNA sequence from clone DKEY-29P9 in l... 40 5.1
32gb|U77354.1|RNU77354 Rattus norvegicus troponin I gene, complete... 40 5.1
33dbj|AB027000.1| Solanum tuberosum PCAS-1 mRNA for beta-cyanoalan... 40 5.1 
>ref|XM_474584.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1134

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 118/140 (84%), Gaps = 1/140 (0%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaacagtcacgatgagctttcctttgttttcaggcctctttgcaagttcaatcgctgcca 302
            |||||||||| |||||||| ||||||||||| ||| ||||||| |||||||  || || |
Sbjct: 1042 gaacagtcacaatgagcttccctttgttttctggcttctttgctagttcaagagcagcaa 983

                                                                        
Query: 303  ccgtgttggctcctgatgatatccccaccagcagaccctcttgcagcgccaattgttgtg 362
            | ||||| |||||||||||||| || ||||| |||||||| | ||| ||||||| | | |
Sbjct: 982  ctgtgttagctcctgatgatattccaaccagaagaccctccttcagtgccaattctcgag 923

                                
Query: 363  cccatcttgacagcatcctc 382
             ||||||| |||||||||||
Sbjct: 922  -ccatcttaacagcatcctc 904



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 151  ttagtccactggcactggctgcatagcctcggcctcc 187
            |||||||||||||||||||||||| ||||| ||||||
Sbjct: 1134 ttagtccactggcactggctgcatggcctcagcctcc 1098
to top
>gb|AY720933.1| Oryza sativa (indica cultivar-group) beta-cyanoalanine synthase (CAS)
            mRNA, complete cds
          Length = 1406

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 118/140 (84%), Gaps = 1/140 (0%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaacagtcacgatgagctttcctttgttttcaggcctctttgcaagttcaatcgctgcca 302
            |||||||||| |||||||| ||||||||||| ||| ||||||| |||||||  || || |
Sbjct: 1098 gaacagtcacaatgagcttccctttgttttctggcttctttgctagttcaagagcagcaa 1039

                                                                        
Query: 303  ccgtgttggctcctgatgatatccccaccagcagaccctcttgcagcgccaattgttgtg 362
            | ||||| |||||||||||||| || ||||| |||||||| | ||| ||||||| | | |
Sbjct: 1038 ctgtgttagctcctgatgatattccaaccagaagaccctccttcagtgccaattctcgag 979

                                
Query: 363  cccatcttgacagcatcctc 382
             ||||||| |||||||||||
Sbjct: 978  -ccatcttaacagcatcctc 960



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                       
Query: 145  tccaagttagtccactggcactggctgcatagcctcggcctcc 187
            |||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1196 tccaagttagtccactggcactggctgcatggcctcagcctcc 1154
to top
>dbj|AK102512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095I16, full
            insert sequence
          Length = 1436

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 118/140 (84%), Gaps = 1/140 (0%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaacagtcacgatgagctttcctttgttttcaggcctctttgcaagttcaatcgctgcca 302
            |||||||||| |||||||| ||||||||||| ||| ||||||| |||||||  || || |
Sbjct: 1098 gaacagtcacaatgagcttccctttgttttctggcttctttgctagttcaagagcagcaa 1039

                                                                        
Query: 303  ccgtgttggctcctgatgatatccccaccagcagaccctcttgcagcgccaattgttgtg 362
            | ||||| |||||||||||||| || ||||| |||||||| | ||| ||||||| | | |
Sbjct: 1038 ctgtgttagctcctgatgatattccaaccagaagaccctccttcagtgccaattctcgag 979

                                
Query: 363  cccatcttgacagcatcctc 382
             ||||||| |||||||||||
Sbjct: 978  -ccatcttaacagcatcctc 960



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                       
Query: 145  tccaagttagtccactggcactggctgcatagcctcggcctcc 187
            |||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1196 tccaagttagtccactggcactggctgcatggcctcagcctcc 1154
to top
>gb|DQ471309.1| Malus x domestica beta-cyanoalanine synthase 2 mRNA, complete cds
          Length = 1486

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 98/117 (83%)
 Strand = Plus / Minus

                                                                        
Query: 242  tgaacagtcacgatgagctttcctttgttttcaggcctctttgcaagttcaatcgctgcc 301
            ||||||||||| ||||| || ||||||||||||||| | || ||||| || || ||||||
Sbjct: 1104 tgaacagtcacaatgagtttgcctttgttttcaggctttttagcaagctccattgctgcc 1045

                                                                     
Query: 302  accgtgttggctcctgatgatatccccaccagcagaccctcttgcagcgccaattgt 358
            || ||||||||||| || ||||| |||||||  || || |||| ||| |||||||||
Sbjct: 1044 actgtgttggctccagacgatattcccaccataagcccttctttcagtgccaattgt 988
to top
>gb|AY107771.1| Zea mays PCO121395 mRNA sequence
          Length = 1573

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 130/161 (80%)
 Strand = Plus / Minus

                                                                        
Query: 182  gcctccttcctcagaccctcgaacagcgccgacgataagtatcgctctcccgcgcttgga 241
            ||||||||||||||  | ||||||||||| ||||| | ||| ||||| ||   ||| |||
Sbjct: 1286 gcctccttcctcagctcatcgaacagcgcggacgacaggtaccgctcgccaaggctcgga 1227

                                                                        
Query: 242  tgaacagtcacgatgagctttcctttgttttcaggcctctttgcaagttcaatcgctgcc 301
             |||| |||||||||||||| || ||||| || |||||||| || || || |  || || 
Sbjct: 1226 agaacggtcacgatgagcttccccttgttctccggcctcttggctagctcgagagcagca 1167

                                                     
Query: 302  accgtgttggctcctgatgatatccccaccagcagaccctc 342
            || ||||||||||| ||||||||||| ||||  ||||||||
Sbjct: 1166 acggtgttggctcccgatgatatcccgaccaaaagaccctc 1126
to top
>emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23,
             complete sequence
          Length = 150305

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                        
Query: 145   tccaagttagtccactggcactggctgcatagcctcggcctcc 187
             |||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 57468 tccaagttagtccactggcactggctgcatggcctcagcctcc 57510



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                         
Query: 254   atgagctttcctttgttttcaggcctctttgcaagttcaatcgctgccaccgtgttggct 313
             |||||||| ||||||||||| ||| ||||||| |||||||  || || || ||||| |||
Sbjct: 57668 atgagcttccctttgttttctggcttctttgctagttcaagagcagcaactgtgttagct 57727

                        
Query: 314   cctgatgatat 324
             |||||||||||
Sbjct: 57728 cctgatgatat 57738
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                          
Query: 145     tccaagttagtccactggcactggctgcatagcctcggcctcc 187
               |||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 4429736 tccaagttagtccactggcactggctgcatggcctcagcctcc 4429778



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                           
Query: 254     atgagctttcctttgttttcaggcctctttgcaagttcaatcgctgccaccgtgttggct 313
               |||||||| ||||||||||| ||| ||||||| |||||||  || || || ||||| |||
Sbjct: 4429936 atgagcttccctttgttttctggcttctttgctagttcaagagcagcaactgtgttagct 4429995

                          
Query: 314     cctgatgatat 324
               |||||||||||
Sbjct: 4429996 cctgatgatat 4430006
to top
>emb|AL442113.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0806H05, complete
             sequence
          Length = 102515

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                        
Query: 145   tccaagttagtccactggcactggctgcatagcctcggcctcc 187
             |||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 93999 tccaagttagtccactggcactggctgcatggcctcagcctcc 94041



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                         
Query: 254   atgagctttcctttgttttcaggcctctttgcaagttcaatcgctgccaccgtgttggct 313
             |||||||| ||||||||||| ||| ||||||| |||||||  || || || ||||| |||
Sbjct: 94199 atgagcttccctttgttttctggcttctttgctagttcaagagcagcaactgtgttagct 94258

                        
Query: 314   cctgatgatat 324
             |||||||||||
Sbjct: 94259 cctgatgatat 94269
to top
>dbj|AB179752.1| Diospyros kaki DkCAS2 mRNA for beta-cyanoalanine synthase, partial
           cds
          Length = 886

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                       
Query: 235 gcttggatgaacagtcacgatgagctttcctttgttttcaggcctctttgcaagttcaat 294
           |||||| |||||||||||||| || || |||||||| || ||| || ||||||||  || 
Sbjct: 562 gcttgggtgaacagtcacgataagtttgcctttgttctctggcttccttgcaagtctaag 503

                                                 
Query: 295 cgctgccaccgtgttggctcctgatgatatccccacca 332
            ||||| || || || ||||||||||||||||||||||
Sbjct: 502 tgctgcaactgtattagctcctgatgatatccccacca 465
to top
>gb|AY207389.1| Hevea brasiliensis latex beta-cyanoalanine synthase mRNA, complete
            cds
          Length = 1415

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                        
Query: 236  cttggatgaacagtcacgatgagctttcctttgttttcaggcctctttgcaagttcaatc 295
            ||||||||||||||||||||||| ||||||||||| || ||| |  | ||||||  ||  
Sbjct: 1103 cttggatgaacagtcacgatgagttttcctttgttctctggcattctagcaagtctaagt 1044

                                                 
Query: 296  gctgccaccgtgttggctcctgatgatatccccacca 332
            || || || ||||||||||| |||||||| |||||||
Sbjct: 1043 gcagcaactgtgttggctccagatgatattcccacca 1007
to top
>gb|AY207388.1| Hevea brasiliensis phloem beta-cyanoalanine synthase mRNA, complete
            cds
          Length = 1411

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                        
Query: 236  cttggatgaacagtcacgatgagctttcctttgttttcaggcctctttgcaagttcaatc 295
            ||||||||||||||||||||||| ||||||||||| || ||| |  | ||||||  ||  
Sbjct: 1087 cttggatgaacagtcacgatgagttttcctttgttctctggcattctagcaagtctaagt 1028

                                                 
Query: 296  gctgccaccgtgttggctcctgatgatatccccacca 332
            || || || ||||||||||| |||||||| |||||||
Sbjct: 1027 gcagcaactgtgttggctccagatgatattcccacca 991
to top
>gb|DQ471308.1| Malus x domestica beta-cyanoalanine synthase 1 mRNA, complete cds
          Length = 1497

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 88/107 (82%)
 Strand = Plus / Minus

                                                                        
Query: 218  aagtatcgctctcccgcgcttggatgaacagtcacgatgagctttcctttgttttcaggc 277
            ||||||||||| ||   ||| || ||||||||||| ||||| || ||||||||||| |||
Sbjct: 1164 aagtatcgctccccaaagctcgggtgaacagtcacaatgagtttgcctttgttttctggc 1105

                                                           
Query: 278  ctctttgcaagttcaatcgctgccaccgtgttggctcctgatgatat 324
             | || ||||| || || |||||||| ||||||||||| || |||||
Sbjct: 1104 tttttagcaagctccattgctgccacagtgttggctccagacgatat 1058
to top
>dbj|AB179751.1| Diospyros kaki DkCAS1 mRNA for beta-cyanoalanine synthase, partial
           cds
          Length = 826

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                       
Query: 235 gcttggatgaacagtcacgatgagctttcctttgttttcaggcctctttgcaagttcaat 294
           |||||||||||||||||| |||||||| |||||||| || |||||  | ||||||  || 
Sbjct: 562 gcttggatgaacagtcacaatgagcttgcctttgttctctggccttctagcaagtctaag 503

                                                 
Query: 295 cgctgccaccgtgttggctcctgatgatatccccacca 332
            ||||| || ||||| || || |||||||| |||||||
Sbjct: 502 tgctgcaactgtgttagcccccgatgatattcccacca 465
to top
>emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E (5 of 5)
          Length = 2199546

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 257     agctttcctttgttttcaggcct 279
               |||||||||||||||||||||||
Sbjct: 1225934 agctttcctttgttttcaggcct 1225956
to top
>dbj|AB029338.1| Solanum tuberosum PCAS-2 mRNA for beta-cyanoalanine synthase like
            protein, complete cds
          Length = 1250

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 215  gataagtatcgctctcccgcgcttggatgaacagtcacgatgagctttcctttgttttc 273
            |||||||||||||||||    |||| ||| |||||||| ||||| || |||||||||||
Sbjct: 1075 gataagtatcgctctccaaaacttgcatgtacagtcactatgagtttgcctttgttttc 1017
to top
>emb|BX296532.7| Zebrafish DNA sequence from clone CH211-281C19 in linkage group 24,
             complete sequence
          Length = 155029

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 22    ttcaactgttgtttacacaatg 43
             ||||||||||||||||||||||
Sbjct: 70301 ttcaactgttgtttacacaatg 70280
to top
>emb|BX784022.6| Zebrafish DNA sequence from clone CH211-152C8 in linkage group 18,
             complete sequence
          Length = 153244

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 22    ttcaactgttgtttacacaatg 43
             ||||||||||||||||||||||
Sbjct: 70291 ttcaactgttgtttacacaatg 70270
to top
>gb|AC118696.14| Mus musculus chromosome 3, clone RP24-62O16, complete sequence
          Length = 190616

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   ctggcactggctgcatagcct 179
             |||||||||||||||||||||
Sbjct: 27462 ctggcactggctgcatagcct 27442
to top
>gb|AC161218.10| Mus musculus chromosome 7, clone RP24-161J8, complete sequence
          Length = 181156

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 175    agcctcggcctccttcctcagaccc 199
              ||||| |||||||||||||||||||
Sbjct: 135981 agcctaggcctccttcctcagaccc 135957
to top
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10,
              complete sequence
          Length = 158833

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 158    actggcactggctgcatagcctcggcctccttcctca 194
              ||||||||||| |||| |||||| |||||||| ||||
Sbjct: 101172 actggcactggttgcacagcctcagcctcctttctca 101208
to top
>gb|AY766094.1| Allium sativum cysteine synthase GCS3 (gcs3) mRNA, complete cds
          Length = 1296

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 311 gctcctgatgatatccccaccagca 335
           ||||||||||||||||| |||||||
Sbjct: 942 gctcctgatgatatcccaaccagca 918
to top
>gb|AC116585.3| Mus musculus BAC clone RP23-358A16 from chromosome 3, complete sequence
          Length = 227492

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   ctggcactggctgcatagcct 179
             |||||||||||||||||||||
Sbjct: 10913 ctggcactggctgcatagcct 10933
to top
>emb|Z22784.1|MMTROPIB M.musculus troponin I gene
          Length = 5691

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 175  agcctcggcctccttcctcagaccc 199
            ||||| |||||||||||||||||||
Sbjct: 3376 agcctaggcctccttcctcagaccc 3400
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 158      actggcactggctgcatagcctcggcctccttcctca 194
                ||||||||||| |||| |||||| |||||||| ||||
Sbjct: 18365807 actggcactggttgcacagcctcagcctcctttctca 18365843
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 158      actggcactggctgcatagcctcggcctccttcctca 194
                ||||||||||| |||| |||||| |||||||| ||||
Sbjct: 18525208 actggcactggttgcacagcctcagcctcctttctca 18525244
to top
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 270     tttcaggcctctttgcaagtt 290
               |||||||||||||||||||||
Sbjct: 2435669 tttcaggcctctttgcaagtt 2435649
to top
>emb|X72803.1|CTHIS C.thummi genes for histones H1, H2A, H3 and H4
          Length = 6696

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 44 tccacatgaaggaacaaacc 63
          ||||||||||||||||||||
Sbjct: 3  tccacatgaaggaacaaacc 22
to top
>emb|AL669871.18| Mouse DNA sequence from clone RP23-48J15 on chromosome 11 Contains a
              novel gene and a novel pseudogene, complete sequence
          Length = 208519

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    ctttcctttgttttcaggcc 278
              ||||||||||||||||||||
Sbjct: 202686 ctttcctttgttttcaggcc 202667
to top
>gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 169964

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   ttcctttgttttcaggcctc 280
             ||||||||||||||||||||
Sbjct: 10065 ttcctttgttttcaggcctc 10084
to top
>gb|AC021889.29| Homo sapiens 3 BAC RP11-554F8 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 178752

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 261 ttcctttgttttcaggcctc 280
           ||||||||||||||||||||
Sbjct: 168 ttcctttgttttcaggcctc 149
to top
>emb|CR846080.8| Zebrafish DNA sequence from clone DKEY-29P9 in linkage group 3, complete
              sequence
          Length = 242078

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    caacatagtaatgcagtgaa 120
              ||||||||||||||||||||
Sbjct: 149563 caacatagtaatgcagtgaa 149582
to top
>gb|U77354.1|RNU77354 Rattus norvegicus troponin I gene, complete cds
          Length = 4517

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 175  agcctcggcctccttcctcagacc 198
            ||||| ||||||||||||||||||
Sbjct: 2694 agcctaggcctccttcctcagacc 2717
to top
>dbj|AB027000.1| Solanum tuberosum PCAS-1 mRNA for beta-cyanoalanine synthase,
           complete cds
          Length = 1206

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 248 gtcacgatgagctttcctttgttttcaggcct 279
           ||||| ||||| |||||||||||||| |||||
Sbjct: 993 gtcactatgagttttcctttgttttctggcct 962


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,262,476
Number of Sequences: 3902068
Number of extensions: 3262476
Number of successful extensions: 54879
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 54757
Number of HSP's gapped (non-prelim): 117
length of query: 382
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 360
effective length of database: 17,147,199,772
effective search space: 6172991917920
effective search space used: 6172991917920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top