>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase 1) (OsGME-1)
          Length = 378

 Score =  158 bits (400), Expect = 6e-39
 Identities = 76/81 (93%), Positives = 79/81 (97%)
 Frame = -3

Query: 488 IPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSS 309
           IPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKE+T+G D+A YGSS
Sbjct: 298 IPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSS 357

Query: 308 KVVSTQAPVQLGSLRAADGKE 246
           KVVSTQAPVQLGSLRAADGKE
Sbjct: 358 KVVSTQAPVQLGSLRAADGKE 378

>GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase 2)
          Length = 371

 Score =  150 bits (379), Expect = 2e-36
 Identities = 71/81 (87%), Positives = 76/81 (93%)
 Frame = -3

Query: 488 IPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSS 309
           IPGPEGVRGRNSDNTLIKEKLGWAPTM+LKDGLR TYFWIKEQ+EKE+ EG D++ YGSS
Sbjct: 291 IPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEKAEGVDLSAYGSS 350

Query: 308 KVVSTQAPVQLGSLRAADGKE 246
           KVV TQAPVQLGSLRAADGKE
Sbjct: 351 KVVQTQAPVQLGSLRAADGKE 371

>GME_ARATH (Q93VR3) GDP-mannose 3,5-epimerase (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase)
          Length = 377

 Score =  145 bits (367), Expect = 4e-35
 Identities = 69/81 (85%), Positives = 74/81 (91%)
 Frame = -3

Query: 488 IPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSS 309
           IPGPEGVRGRNSDN LIKEKLGWAP M+LK+GLR TYFWIKEQIEKE+ +G DV+ YGSS
Sbjct: 297 IPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSS 356

Query: 308 KVVSTQAPVQLGSLRAADGKE 246
           KVV TQAPVQLGSLRAADGKE
Sbjct: 357 KVVGTQAPVQLGSLRAADGKE 377

>FCL2_ARATH (Q9LMU0) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           2) (AtGER2)
          Length = 328

 Score = 35.4 bits (80), Expect = 0.082
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 479 PEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKER 345
           P+G   +  D++ +   LGW P + LKDGL  TY W  E + +++
Sbjct: 284 PDGTPRKLMDSSKLAS-LGWTPKISLKDGLSQTYEWYLENVVQKK 327

>FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           1)
          Length = 328

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 479 PEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQI 357
           P+G   +  D++ I+E +GW P + LK+GL  TY W  E +
Sbjct: 284 PDGTPRKLMDSSKIQE-MGWKPKVPLKEGLVETYKWYVENV 323

>FCL1_ARATH (O49213) GDP-L-fucose synthase 1 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           1) (AtGER1) (AtFX)
          Length = 312

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 479 PEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQI 357
           P+G   +  D++ +   LGW P + L+DGL  TY W  + +
Sbjct: 270 PDGTPRKLMDSSKLAS-LGWTPKVSLRDGLSQTYDWYLKNV 309

>GFRA3_MOUSE (O35118) GDNF family receptor alpha-3 precursor (GFR-alpha-3)|
          Length = 397

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = -3

Query: 203 PNCPPIGSFVAKTLENCTACPAYPMCDSADSSAPVHCHPH*LLSSCQQNSS 51
           PNC  + SF          C A P+C S       HCHP  +L +C    S
Sbjct: 243 PNCLDLRSF----------CRADPLCRSRLMDFQTHCHPMDILGTCATEQS 283

>FCL2_ORYSA (Q67WR5) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           2)
          Length = 347

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -3

Query: 479 PEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTY-FWIKEQ 360
           PEGV  R  D+  ++ KLGW P + L+DG++  Y F+++ +
Sbjct: 300 PEGVARRVVDSGRMR-KLGWEPRVALRDGIQDLYRFYLRHE 339

>GFRA3_HUMAN (O60609) GDNF family receptor alpha-3 precursor (GFR-alpha-3)|
          Length = 400

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -3

Query: 203 PNC--PPIGSFVAKTLENCTACPAYPMCDSADSSAPVHCHPH*LLSSCQQNSS 51
           PNC  PP+       LE    C + P+C S       HCHP  +L +C    S
Sbjct: 237 PNCALPPVAP---NCLELRRLCFSDPLCRSRLVDFQTHCHPMDILGTCATEQS 286

>RY44_DROME (Q24498) Ryanodine receptor 44F|
          Length = 5127

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 204  QWHNRPGVDMHSCLLLAVSRAEGAQLHRCLCGHHL 308
            Q   R G D H   LL +  AEGA+L  C   HHL
Sbjct: 1974 QAFEREGKDEHRKGLLTMKMAEGAKLQMCYLLHHL 2008

>ALCR_EMENI (P21228) Regulatory protein alcR|
          Length = 821

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 181 PSLRKHLRIAQPALPTPCVIQQILVLLFIVTPIN--YYHRVNRI 56
           P    H +I+QPA   PC  +Q    L   TP+    Y RV ++
Sbjct: 566 PDHESHTQISQPAARWPCTYEQAAAALSSATPVKVLLYRRVTQL 609

>STRE_STRGR (P29782) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)|
          Length = 328

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 452 DNTLIKEKLGWAPTMKLKDGLRFTYFW 372
           D+T I+ +LG+AP + L DGL  T  W
Sbjct: 283 DSTRIQRELGFAPAVDLADGLAATVAW 309

>PANC_NEIMA (P57035) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate|
           synthetase) (Pantoate-activating enzyme)
          Length = 278

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 380 YFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSLRAADGKE 246
           Y W+ + +E  R +  +VAR G  K+V   A  +LG+ R  D  E
Sbjct: 231 YGWVVDYVEIRRVDTLEVARAGDKKLV-VLAAARLGTTRLIDNLE 274

>ARLY_PROMA (Q7VEK0) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 462

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 419 APTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQL 276
           A T+ L++GL F+   +KE +E + +   DVA Y  SK +  +   Q+
Sbjct: 341 AMTILLEEGLEFSLERLKETVEADFSNATDVADYLVSKNIPFREAYQI 388

>EMR1_MOUSE (Q61549) EGF-like module-containing mucin-like hormone|
           receptor-like 1 precursor (Cell surface glycoprotein
           EMR1) (EMR1 hormone receptor) (Cell surface glycoprotein
           F4/80)
          Length = 931

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 126 THGVGRAGCAILKCFRNEGSDRWAIGQWHNRPGVDMHSCLLLAV 257
           T+ +GRA C+ L+ F +     W +G   N    D+  CL + +
Sbjct: 99  TNILGRAKCSCLRGFSSSTGKDWILGSLDNFLCADVDECLTIGI 142

>PANC_NEIMB (P57036) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate|
           synthetase) (Pantoate-activating enzyme)
          Length = 278

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -3

Query: 446 TLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSL 267
           +L++  L +A   K        Y W+ + +E  R +  +VAR G  K+V   A   LG+ 
Sbjct: 209 SLVQGSLDYAGLEKRAVQSLTEYGWVVDYVEIRRADTLEVARAGDKKLV-VLAAACLGTT 267

Query: 266 RAADGKE 246
           R  D  E
Sbjct: 268 RLIDNLE 274

>YQAK_BACSU (P45908) Hypothetical protein yqaK|
          Length = 284

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 428 LGWAPTMKLKDGLRFTYFWIKEQIEKER 345
           +G+A   +L +G R T +W K Q+EK +
Sbjct: 158 IGYAAYFELINGFRKTVYWTKAQVEKHK 185


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,478,716
Number of Sequences: 219361
Number of extensions: 1343207
Number of successful extensions: 4331
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4327
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)