ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197219.1| Oryza sativa (japonica cultivar-group) putative... 60 8e-06
2gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno... 60 8e-06
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
4dbj|AK105774.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
5dbj|AK072008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
6dbj|AK069511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
7gb|AY106431.1| Zea mays PCO116332 mRNA sequence 60 8e-06
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 60 8e-06
9gb|DQ160098.1| Taraxacum officinale TO82a-3 (To82a-3) mRNA, part... 52 0.002
10gb|BT009156.1| Triticum aestivum clone wl1n.pk0068.d3:fis, full ... 52 0.002
11gb|AY104410.1| Zea mays PCO116331 mRNA sequence 52 0.002
12ref|NM_124603.2| Arabidopsis thaliana MSBP1 AT5G52240 (MSBP1) mR... 44 0.45
13gb|BT000922.1| Arabidopsis thaliana clone C105100 putative proge... 44 0.45
14emb|AL513016.5| Human DNA sequence from clone RP11-474O21 on chr... 44 0.45
15gb|AY046006.1| Arabidopsis thaliana At5g52240 mRNA sequence 44 0.45
16emb|CR855878.5| Human DNA sequence from clone RP13-469P20 on chr... 44 0.45
17dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
18emb|BX829533.1|CNS0A08R Arabidopsis thaliana Full-length cDNA Co... 44 0.45
19emb|BX832321.1|CNS09ZQE Arabidopsis thaliana Full-length cDNA Co... 44 0.45
20gb|AY086811.1| Arabidopsis thaliana clone 28003 mRNA, complete s... 44 0.45
21dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
22dbj|AB025603.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.45
23gb|AF153284.1|AF153284 Arabidopsis thaliana putative progesteron... 44 0.45
24ref|NM_114748.2| Arabidopsis thaliana ATMP2 AT3G48890 (ATMP2) mR... 42 1.8
25gb|AC013391.12| Homo sapiens chromosome 15, clone RP11-429B14, c... 42 1.8
26gb|AC116766.9| Mus musculus chromosome 18, clone RP23-395B17, co... 42 1.8
27gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete se... 42 1.8
28ref|XM_783458.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.8
29ref|XM_789544.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.8
30gb|AC165271.2| Mus musculus BAC clone RP24-424G16 from chromosom... 42 1.8
31emb|AL132963.1|ATT21J18 Arabidopsis thaliana DNA chromosome 3, B... 42 1.8
32gb|AY079104.1| Arabidopsis thaliana AT3g48890/T21J18_160 mRNA, c... 42 1.8
33gb|AF419567.1|AF419567 Arabidopsis thaliana AT3g48890/T21J18_160... 42 1.8
34emb|BX824682.1|CNS0A7KU Arabidopsis thaliana Full-length cDNA Co... 42 1.8
35gb|AF284446.1|AF284446 Homo sapiens tumor-related protein DRC2 (... 42 1.8
36gb|AF153283.1|AF153283 Arabidopsis thaliana putative progesteron... 42 1.8
37dbj|AP003154.2| Mus musculus genomic DN, chromosome 16 clone:RP2... 42 1.8
38dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.8
39emb|CT030190.9| Mouse DNA sequence from clone RP23-115D20 on chr... 42 1.8
40ref|NM_106297.1| Arabidopsis thaliana cinnamoyl-CoA reductase AT... 40 7.1
41ref|NM_103819.1| Arabidopsis thaliana unknown protein AT1G49290 ... 40 7.1
42gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, com... 40 7.1
43gb|AE007249.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 7.1
44ref|NM_029070.1| Mus musculus RIKEN cDNA 4930511J11 gene (493051... 40 7.1
45emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 i... 40 7.1
46gb|DQ459168.1| Arabidopsis thaliana unknown (At1g49290) gene, co... 40 7.1
47gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 geno... 40 7.1
48gb|AC123851.4| Mus musculus BAC clone RP23-323K4 from chromosome... 40 7.1
49gb|AE004137.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 7.1
50emb|Z99290.1|HS299C21 Human DNA sequence from clone RP1-299C21 o... 40 7.1
51gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 7.1
52gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14... 40 7.1
53dbj|AK015757.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 7.1
54gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15... 40 7.1
55gb|BC027071.1| Mus musculus RIKEN cDNA 4930511J11 gene, mRNA (cD... 40 7.1
56dbj|AP001021.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 7.1
57dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 7.1 
>ref|NM_197219.1| Oryza sativa (japonica cultivar-group) putative steroid membrane
           binding protein (OSJNBb0073N24.4), mRNA
          Length = 909

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 484 cttcttgacggtaccgaccttcacatacttgctcatgaactt 525
           |||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 513 cttcttgacggtaccgaccttcacgtacttgcccataaactt 472



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 353 tccttctcttttacctcctccgagctcacctccctcggctt 393
           ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 650 tccttttcttttacttcctccgagcttacctccctcggctt 610
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>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
             sequence
          Length = 130058

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 484   cttcttgacggtaccgaccttcacatacttgctcatgaactt 525
             |||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 16650 cttcttgacggtaccgaccttcacgtacttgcccataaactt 16691



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 353   tccttctcttttacctcctccgagctcacctccctcggctt 393
             ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 16513 tccttttcttttacttcctccgagcttacctccctcggctt 16553
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 484      cttcttgacggtaccgaccttcacatacttgctcatgaactt 525
                |||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 18655372 cttcttgacggtaccgaccttcacgtacttgcccataaactt 18655413



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 353      tccttctcttttacctcctccgagctcacctccctcggctt 393
                ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 18655235 tccttttcttttacttcctccgagcttacctccctcggctt 18655275
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>dbj|AK105774.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F02, full
           insert sequence
          Length = 985

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 484 cttcttgacggtaccgaccttcacatacttgctcatgaactt 525
           |||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 591 cttcttgacggtaccgaccttcacgtacttgcccataaactt 550



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 353 tccttctcttttacctcctccgagctcacctccctcggctt 393
           ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 728 tccttttcttttacttcctccgagcttacctccctcggctt 688
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>dbj|AK072008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099K01, full
            insert sequence
          Length = 2077

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 484  cttcttgacggtaccgaccttcacatacttgctcatgaactt 525
            |||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 1903 cttcttgacggtaccgaccttcacgtacttgcccataaactt 1862



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 353  tccttctcttttacctcctccgagctcacctccctcggctt 393
            ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 2040 tccttttcttttacttcctccgagcttacctccctcggctt 2000
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>dbj|AK069511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019P08, full
           insert sequence
          Length = 1030

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 484 cttcttgacggtaccgaccttcacatacttgctcatgaactt 525
           |||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 636 cttcttgacggtaccgaccttcacgtacttgcccataaactt 595



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 353 tccttctcttttacctcctccgagctcacctccctcggctt 393
           ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 773 tccttttcttttacttcctccgagcttacctccctcggctt 733
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>gb|AY106431.1| Zea mays PCO116332 mRNA sequence
          Length = 1139

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 484 cttcttgacggtaccgaccttcacatacttgctcatgaactt 525
           ||||||||| || ||||||||||| |||||||||||||||||
Sbjct: 578 cttcttgaccgtgccgaccttcacgtacttgctcatgaactt 537
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 484      cttcttgacggtaccgaccttcacatacttgctcatgaactt 525
                |||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 18666225 cttcttgacggtaccgaccttcacgtacttgcccataaactt 18666266



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 353      tccttctcttttacctcctccgagctcacctccctcggctt 393
                ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 18666088 tccttttcttttacttcctccgagcttacctccctcggctt 18666128
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>gb|DQ160098.1| Taraxacum officinale TO82a-3 (To82a-3) mRNA, partial cds
          Length = 344

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 488 ttgacggtaccgaccttcacatacttgctcatgaactt 525
           |||||||| ||||||||  |||||||||||||||||||
Sbjct: 69  ttgacggttccgaccttggcatacttgctcatgaactt 32
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>gb|BT009156.1| Triticum aestivum clone wl1n.pk0068.d3:fis, full insert mRNA
           sequence
          Length = 1125

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 484 cttcttgacggtaccgaccttcacatacttgctcatgaactt 525
           |||| |||| ||||| |||||||| |||||||||||||||||
Sbjct: 644 cttcgtgacagtacccaccttcacgtacttgctcatgaactt 603
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>gb|AY104410.1| Zea mays PCO116331 mRNA sequence
          Length = 790

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 484 cttcttgacggtaccgaccttcacatacttgctcatgaactt 525
           |||| |||| ||||| |||||||| |||||||||||||||||
Sbjct: 275 cttcgtgacagtacccaccttcacgtacttgctcatgaactt 234
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>ref|NM_124603.2| Arabidopsis thaliana MSBP1 AT5G52240 (MSBP1) mRNA, complete cds
          Length = 906

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 488 ttgacggtaccgaccttcacatacttgctcatgaactt 525
           ||||| ||||| |||||  |||||||||||||||||||
Sbjct: 573 ttgacagtaccaaccttagcatacttgctcatgaactt 536
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>gb|BT000922.1| Arabidopsis thaliana clone C105100 putative progesterone-binding
           protein (At5g52240) mRNA, complete cds
          Length = 694

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 488 ttgacggtaccgaccttcacatacttgctcatgaactt 525
           ||||| ||||| |||||  |||||||||||||||||||
Sbjct: 512 ttgacagtaccaaccttagcatacttgctcatgaactt 475
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>emb|AL513016.5| Human DNA sequence from clone RP11-474O21 on chromosome 1 Contains the
             5' end of the gene for short-chain dehydrogenase/reductase
             1 (SDR1), two genes for novel proteins similar to
             esterases, a ribosomal protein L23a (RPL23A) pseudogene,
             the gene for a novel protein (MGC35194) and a CpG island,
             complete sequence
          Length = 150720

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 465   cctcttctccaagaaatgccttcttg 490
             |||||||||||||||| |||||||||
Sbjct: 88898 cctcttctccaagaaaggccttcttg 88873
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>gb|AY046006.1| Arabidopsis thaliana At5g52240 mRNA sequence
          Length = 861

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 488 ttgacggtaccgaccttcacatacttgctcatgaactt 525
           ||||| ||||| |||||  |||||||||||||||||||
Sbjct: 559 ttgacagtaccaaccttagcatacttgctcatgaactt 522
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>emb|CR855878.5| Human DNA sequence from clone RP13-469P20 on chromosome 1, complete
             sequence
          Length = 225410

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 465   cctcttctccaagaaatgccttcttg 490
             |||||||||||||||| |||||||||
Sbjct: 88944 cctcttctccaagaaaggccttcttg 88919
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 237     gtccaagtccaacgtgctggta 258
               ||||||||||||||||||||||
Sbjct: 1683155 gtccaagtccaacgtgctggta 1683176
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>emb|BX829533.1|CNS0A08R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB19ZD11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 841

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 488 ttgacggtaccgaccttcacatacttgctcatgaactt 525
           ||||| ||||| |||||  |||||||||||||||||||
Sbjct: 534 ttgacagtaccaaccttagcatacttgctcatgaactt 497
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>emb|BX832321.1|CNS09ZQE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH65ZD11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 869

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 488 ttgacggtaccgaccttcacatacttgctcatgaactt 525
           ||||| ||||| |||||  |||||||||||||||||||
Sbjct: 559 ttgacagtaccaaccttagcatacttgctcatgaactt 522
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>gb|AY086811.1| Arabidopsis thaliana clone 28003 mRNA, complete sequence
          Length = 889

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 488 ttgacggtaccgaccttcacatacttgctcatgaactt 525
           ||||| ||||| |||||  |||||||||||||||||||
Sbjct: 556 ttgacagtaccaaccttagcatacttgctcatgaactt 519
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>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0582D05
          Length = 150483

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 237   gtccaagtccaacgtgctggta 258
             ||||||||||||||||||||||
Sbjct: 82655 gtccaagtccaacgtgctggta 82676
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>dbj|AB025603.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F17P19
          Length = 48420

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 488   ttgacggtaccgaccttcacatacttgctcatgaactt 525
             ||||| ||||| |||||  |||||||||||||||||||
Sbjct: 34547 ttgacagtaccaaccttagcatacttgctcatgaactt 34510
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>gb|AF153284.1|AF153284 Arabidopsis thaliana putative progesterone-binding protein homolog
           (Atmp1) mRNA, complete cds
          Length = 847

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 488 ttgacggtaccgaccttcacatacttgctcatgaactt 525
           ||||| ||||| |||||  |||||||||||||||||||
Sbjct: 573 ttgacagtaccaaccttagcatacttgctcatgaactt 536
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>ref|NM_114748.2| Arabidopsis thaliana ATMP2 AT3G48890 (ATMP2) mRNA, complete cds
          Length = 990

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 497 ccgaccttcacatacttgctcatgaactt 525
           ||||| || ||||||||||||||||||||
Sbjct: 559 ccgactttgacatacttgctcatgaactt 531
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>gb|AC013391.12| Homo sapiens chromosome 15, clone RP11-429B14, complete sequence
          Length = 210797

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 353    tccttctcttttacctcctcc 373
              |||||||||||||||||||||
Sbjct: 111084 tccttctcttttacctcctcc 111064
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>gb|AC116766.9| Mus musculus chromosome 18, clone RP23-395B17, complete sequence
          Length = 207631

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 353    tccttctcttttacctcctcc 373
              |||||||||||||||||||||
Sbjct: 141735 tccttctcttttacctcctcc 141715
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>gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete sequence
          Length = 137979

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   caacagacgacttaacaaatg 148
             |||||||||||||||||||||
Sbjct: 42681 caacagacgacttaacaaatg 42701
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>ref|XM_783458.1| PREDICTED: Strongylocentrotus purpuratus similar to CG5543-PA
           (LOC583554), partial mRNA
          Length = 1636

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 276 gatacagatttattgccatga 296
           |||||||||||||||||||||
Sbjct: 605 gatacagatttattgccatga 585
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>ref|XM_789544.1| PREDICTED: Strongylocentrotus purpuratus similar to CG5543-PA
           (LOC589915), mRNA
          Length = 2043

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 276 gatacagatttattgccatga 296
           |||||||||||||||||||||
Sbjct: 599 gatacagatttattgccatga 579
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>gb|AC165271.2| Mus musculus BAC clone RP24-424G16 from chromosome 16, complete sequence
          Length = 165496

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 336    ctgcatcagctgcggcttcct 356
              |||||||||||||||||||||
Sbjct: 149943 ctgcatcagctgcggcttcct 149963
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>emb|AL132963.1|ATT21J18 Arabidopsis thaliana DNA chromosome 3, BAC clone T21J18
          Length = 82912

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 497   ccgaccttcacatacttgctcatgaactt 525
             ||||| || ||||||||||||||||||||
Sbjct: 79581 ccgactttgacatacttgctcatgaactt 79553
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>gb|AY079104.1| Arabidopsis thaliana AT3g48890/T21J18_160 mRNA, complete cds
          Length = 702

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 497 ccgaccttcacatacttgctcatgaactt 525
           ||||| || ||||||||||||||||||||
Sbjct: 491 ccgactttgacatacttgctcatgaactt 463
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>gb|AF419567.1|AF419567 Arabidopsis thaliana AT3g48890/T21J18_160 mRNA, complete cds
          Length = 945

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 497 ccgaccttcacatacttgctcatgaactt 525
           ||||| || ||||||||||||||||||||
Sbjct: 559 ccgactttgacatacttgctcatgaactt 531
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>emb|BX824682.1|CNS0A7KU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH64ZC05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 912

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 497 ccgaccttcacatacttgctcatgaactt 525
           ||||| || ||||||||||||||||||||
Sbjct: 541 ccgactttgacatacttgctcatgaactt 513
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>gb|AF284446.1|AF284446 Homo sapiens tumor-related protein DRC2 (DRC2) gene, complete cds
          Length = 25172

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 353   tccttctcttttacctcctcc 373
             |||||||||||||||||||||
Sbjct: 15677 tccttctcttttacctcctcc 15657
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>gb|AF153283.1|AF153283 Arabidopsis thaliana putative progesterone-binding protein homolog
           (Atmp2) mRNA, complete cds
          Length = 930

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 497 ccgaccttcacatacttgctcatgaactt 525
           ||||| || ||||||||||||||||||||
Sbjct: 502 ccgactttgacatacttgctcatgaactt 474
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>dbj|AP003154.2| Mus musculus genomic DN, chromosome 16 clone:RP21-564B5, complete
             sequence
          Length = 111402

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 336   ctgcatcagctgcggcttcct 356
             |||||||||||||||||||||
Sbjct: 61511 ctgcatcagctgcggcttcct 61491
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>dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-338H14, complete
             sequence
          Length = 175731

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 99    cagcagctaaattattcacccaaaa 123
             |||||||||||||||||| ||||||
Sbjct: 84302 cagcagctaaattattcatccaaaa 84278
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>emb|CT030190.9| Mouse DNA sequence from clone RP23-115D20 on chromosome 16, complete
              sequence
          Length = 228196

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 336    ctgcatcagctgcggcttcct 356
              |||||||||||||||||||||
Sbjct: 184045 ctgcatcagctgcggcttcct 184025
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>ref|NM_106297.1| Arabidopsis thaliana cinnamoyl-CoA reductase AT1G76470 mRNA,
           complete cds
          Length = 983

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 351 cttccttctcttttacctcc 370
           ||||||||||||||||||||
Sbjct: 864 cttccttctcttttacctcc 845
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>ref|NM_103819.1| Arabidopsis thaliana unknown protein AT1G49290 mRNA, complete cds
          Length = 1017

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 351 cttccttctcttttacctcc 370
           ||||||||||||||||||||
Sbjct: 703 cttccttctcttttacctcc 684
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>gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, complete sequence
          Length = 210051

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 339    catcagctgcggcttccttctctt 362
              |||||||||| |||||||||||||
Sbjct: 109167 catcagctgctgcttccttctctt 109190
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>gb|AE007249.1| Sinorhizobium meliloti 1021 plasmid pSymA section 55 of 121 of the
            complete plasmid sequence
          Length = 10029

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 381  cctccctcggcttgtgctca 400
            ||||||||||||||||||||
Sbjct: 9576 cctccctcggcttgtgctca 9557
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>ref|NM_029070.1| Mus musculus RIKEN cDNA 4930511J11 gene (4930511J11Rik), mRNA
          Length = 1407

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 366 cctcctccgagctcacctcc 385
           ||||||||||||||||||||
Sbjct: 866 cctcctccgagctcacctcc 885
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>emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 in linkage group 9,
              complete sequence
          Length = 218171

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    ttccttctcttttacctcct 371
              ||||||||||||||||||||
Sbjct: 174362 ttccttctcttttacctcct 174381
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>gb|DQ459168.1| Arabidopsis thaliana unknown (At1g49290) gene, complete cds
          Length = 1017

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 351 cttccttctcttttacctcc 370
           ||||||||||||||||||||
Sbjct: 703 cttccttctcttttacctcc 684
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>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete
              sequence
          Length = 125021

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 351    cttccttctcttttacctcc 370
              ||||||||||||||||||||
Sbjct: 110987 cttccttctcttttacctcc 110968
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>gb|AC123851.4| Mus musculus BAC clone RP23-323K4 from chromosome 16, complete sequence
          Length = 230221

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    cctcctccgagctcacctcc 385
              ||||||||||||||||||||
Sbjct: 168533 cctcctccgagctcacctcc 168552
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>gb|AE004137.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 45
            of 251 of the complete chromosome
          Length = 10291

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  cacccaaaagtatcaacaga 134
            ||||||||||||||||||||
Sbjct: 5985 cacccaaaagtatcaacaga 5966
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>emb|Z99290.1|HS299C21 Human DNA sequence from clone RP1-299C21 on chromosome 6q16, complete
             sequence
          Length = 77183

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   tggctgtttctggggatgtg 454
             ||||||||||||||||||||
Sbjct: 29907 tggctgtttctggggatgtg 29926
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    gctgcggcttccttctcttt 363
              ||||||||||||||||||||
Sbjct: 477500 gctgcggcttccttctcttt 477481
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>gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14G6 genomic sequence, complete
             sequence
          Length = 100806

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   cttccttctcttttacctcc 370
             ||||||||||||||||||||
Sbjct: 26376 cttccttctcttttacctcc 26395
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>dbj|AK015757.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930511J11 product:hypothetical
           PMP-22/EMP/MP20 and claudin family containing protein,
           full insert sequence
          Length = 1407

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 366 cctcctccgagctcacctcc 385
           ||||||||||||||||||||
Sbjct: 866 cctcctccgagctcacctcc 885
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>gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete
             sequence
          Length = 94487

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   cttccttctcttttacctcc 370
             ||||||||||||||||||||
Sbjct: 15387 cttccttctcttttacctcc 15368
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>gb|BC027071.1| Mus musculus RIKEN cDNA 4930511J11 gene, mRNA (cDNA clone MGC:38714
           IMAGE:5357758), complete cds
          Length = 1393

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 366 cctcctccgagctcacctcc 385
           ||||||||||||||||||||
Sbjct: 838 cctcctccgagctcacctcc 857
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>dbj|AP001021.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-793A3, complete
              sequence
          Length = 222596

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 378    tcacctccctcggcttgtgctcag 401
              ||||||||||| ||||||||||||
Sbjct: 176651 tcacctccctcagcttgtgctcag 176674
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>dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-119P12, complete
             sequence
          Length = 186978

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 378   tcacctccctcggcttgtgctcag 401
             ||||||||||| ||||||||||||
Sbjct: 18732 tcacctccctcagcttgtgctcag 18755


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,042,755
Number of Sequences: 3902068
Number of extensions: 4042755
Number of successful extensions: 72637
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72465
Number of HSP's gapped (non-prelim): 172
length of query: 525
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 502
effective length of database: 17,143,297,704
effective search space: 8605935447408
effective search space used: 8605935447408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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