>UL49_BHV1C (P30022) Tegument protein UL49 homolog|
          Length = 258

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +1

Query: 268 SRRGELDAAXXXXXXXXMPPLRDPVTQEDAGDGGAGRSSPPLRRPRAVPWRAGVA 432
           +RR    A+         PP+  P T+  +G  GA    PP  RPRA P    VA
Sbjct: 91  ARRSSSRASSRPPRAAADPPVLRPATRGSSGGAGAVAVGPP--RPRAPPGANAVA 143

>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 707

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +1

Query: 322 PPLRDPVTQEDAGDGGAG-----RSSPPLRRPRAVPWRAGV 429
           PP R  V    AG GG G     R  PPL +P A P+   V
Sbjct: 27  PPGRQVVMLLTAGSGGRGGGGGRRQQPPLAQPSASPYPEAV 67

>RELB_CHICK (P51509) Transcription factor RelB homolog|
          Length = 549

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 337 PVTQEDAGDGGAGRSSPPLRRPRAVPW 417
           P+  +   +GG GR+SP  R P  + W
Sbjct: 514 PICSQGTSEGGGGRTSPRYRPPPPLKW 540

>MYCN_HUMAN (P04198) N-myc proto-oncogene protein|
          Length = 464

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = -3

Query: 426 ASAPRHGPRAAEGRG*PASAAVPGV 352
           ASAP  GP  A G G  A A  PGV
Sbjct: 210 ASAPAAGPAVASGAGIAAPAGAPGV 234

>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 538

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 322 PPLRDPVTQEDAGDGGAGRSSPPLRRPRAVP 414
           PP RDP      G+GG+G  +P    P + P
Sbjct: 163 PPYRDPGPSSSDGNGGSGEVAPTEGAPDSSP 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,464,317
Number of Sequences: 219361
Number of extensions: 666883
Number of successful extensions: 1583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)