ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DUFFY_MOUSE (Q9QUI6) Duffy antigen/chemokine receptor (CD234 ant... 33 0.41
2DUFFY_MACMU (Q95LF2) Duffy antigen/chemokine receptor (CD234 ant... 32 1.5
3DUFFY_PAPHA (Q95LG5) Duffy antigen/chemokine receptor (CD234 ant... 32 1.5
4DUFFY_HUMAN (Q16570) Duffy antigen/chemokine receptor (Fy glycop... 32 1.5
5DUFFY_PANTR (Q95LF3) Duffy antigen/chemokine receptor (CD234 ant... 31 2.0
6TRIO_HUMAN (O75962) Triple functional domain protein (PTPRF-inte... 31 2.6
7DUFFY_SAGIM (Q95LF7) Duffy antigen/chemokine receptor (CD234 ant... 31 2.6
8DUFFY_GORGO (Q95LF9) Duffy antigen/chemokine receptor (CD234 ant... 31 2.6
9DUFFY_CEBAP (Q95LF4) Duffy antigen/chemokine receptor (CD234 ant... 30 3.4
10XYLB_PSEPU (P39849) Aryl-alcohol dehydrogenase (EC 1.1.1.90) (Be... 29 7.7
11GSB_DROME (P09082) Protein gooseberry (Protein gooseberry distal... 29 7.7
12DUFFY_SAIBB (Q95LF5) Duffy antigen/chemokine receptor (CD234 ant... 29 10.0

>DUFFY_MOUSE (Q9QUI6) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 334

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
 Frame = -2

Query: 526 RTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAHARTLAHLTEP 359
           R+  +L++TC++  ++  M   TE+ ++ + VATPLLLA   H +   R+L+ L+ P
Sbjct: 265 RSKTVLLYTCQSQKILDAMLNVTEALSMLHCVATPLLLALFCH-QTTRRSLSSLSLP 320



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>DUFFY_MACMU (Q95LF2) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 335

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 547 LQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAHARTLAH 371
           L L+   R+  LL+ TC A   + L+    E+ A+ + VATPLLLA       H  T   
Sbjct: 259 LGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVATPLLLALF----CHQATRTL 314

Query: 370 LTEPPLP 350
           L   PLP
Sbjct: 315 LPSLPLP 321



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>DUFFY_PAPHA (Q95LG5) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 547 LQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAHARTLAH 371
           L L+   R+  LL+ TC A   + L+    E+ A+ + VATPLLLA       H  T   
Sbjct: 260 LGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVATPLLLALF----CHQATRTL 315

Query: 370 LTEPPLP 350
           L   PLP
Sbjct: 316 LPSLPLP 322



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>DUFFY_HUMAN (Q16570) Duffy antigen/chemokine receptor (Fy glycoprotein) (GpFy)|
           (Glycoprotein D) (Plasmodium vivax receptor) (CD234
           antigen)
          Length = 336

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 547 LQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAHARTLAH 371
           L L+   R+  LL+ TC A   + L+    E+ A+ + VATPLLLA       H  T   
Sbjct: 260 LGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVATPLLLALF----CHQATRTL 315

Query: 370 LTEPPLP 350
           L   PLP
Sbjct: 316 LPSLPLP 322



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>DUFFY_PANTR (Q95LF3) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 547 LQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAHARTLAH 371
           L L+   R+  LL+ TC A   + L+    E+ A+ + VATPLLLA       H  T   
Sbjct: 260 LGLDFLVRSKLLLLSTCLARQALDLLLNLAEALAILHCVATPLLLALF----CHQATRTL 315

Query: 370 LTEPPLP 350
           L   PLP
Sbjct: 316 LPSLPLP 322



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>TRIO_HUMAN (O75962) Triple functional domain protein (PTPRF-interacting|
           protein)
          Length = 3038

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 57  SPDSLSISLNIA*KASKLLTIIPSRKQHDNITMPVWKKRKRTVHKPTKTCKSKLEGS--- 227
           S DSL+ S N +     +L +I     H      +W+ RK  +H+  + C  + E     
Sbjct: 461 SSDSLTASANYSKAVHHVLDVIHEVLHHQRHVRTIWQHRKVRLHQRLQLCVFQQEVQQVL 520

Query: 228 EWLQN 242
           +W++N
Sbjct: 521 DWIEN 525



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>DUFFY_SAGIM (Q95LF7) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -2

Query: 547 LQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAHARTLAH 371
           L L+   R+  LL+ TC A  V+ L+    E+ A+ + VATPLLLA   H     RTL  
Sbjct: 260 LGLDFLVRSKLLLLPTCLAQQVLDLLLNLAEALAIVHCVATPLLLALFCHQA--TRTLV- 316

Query: 370 LTEPPLP 350
              P LP
Sbjct: 317 ---PSLP 320



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>DUFFY_GORGO (Q95LF9) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -2

Query: 547 LQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAHARTLAH 371
           L L+   R+  LL+ TC A   + L+    E+ A+ + VATPL+LA   H     RTL  
Sbjct: 260 LGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVATPLILALFYHQA--TRTL-- 315

Query: 370 LTEPPLP 350
           L   PLP
Sbjct: 316 LPSLPLP 322



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>DUFFY_CEBAP (Q95LF4) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 547 LQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAHARTLAH 371
           L L+   R+  LL+ TC A  V+ L+    E+  + + VATPLLLA       H  T   
Sbjct: 260 LGLDFLVRSKLLLLPTCLAQQVLDLLLNLAEALTIVHCVATPLLLALF----CHQATRTL 315

Query: 370 LTEPPLP 350
           L   PLP
Sbjct: 316 LPSLPLP 322



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>XYLB_PSEPU (P39849) Aryl-alcohol dehydrogenase (EC 1.1.1.90) (Benzyl alcohol|
           dehydrogenase) (BADH)
          Length = 366

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 449 LTLCGCNSIAACQAGAPTGACKNTGAPNRTTSSVNG 342
           LT   C S  AC +G PT +C N+  PN    SV G
Sbjct: 85  LTFYTCGSCDACLSGDPT-SCANSFGPNFMGRSVTG 119



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>GSB_DROME (P09082) Protein gooseberry (Protein gooseberry distal) (BSH9)|
          Length = 427

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
 Frame = +2

Query: 158 GMEEEEKDSSQTHKDM*IKARRFRMASESTQDSAKEPSCSRWKY-----------CWPLK 304
           G E+E +D ++    +  K RR R    + Q  A E   +R +Y              L 
Sbjct: 166 GSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLT 225

Query: 305 QKS*ILWFLNRRSHLRKR 358
           +    +WF NRR+ LRK+
Sbjct: 226 EARVQVWFSNRRARLRKQ 243



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>DUFFY_SAIBB (Q95LF5) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 511 LIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAHARTLAHLTEPPLP 350
           L+ TC A  V+ L+    E+ A+ + VATPLLLA       H  T   L   PLP
Sbjct: 272 LLPTCLAQQVLDLLLNLAEALAIVHCVATPLLLALF----CHQTTRTLLPSLPLP 322


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,387,674
Number of Sequences: 219361
Number of extensions: 1728426
Number of successful extensions: 4843
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4842
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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