ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart49e01 |
|---|---|
| Clone Library Name | barley_pub |
>BIOD_MYCTU (O06620) Dethiobiotin synthetase (EC 6.3.3.3) (Dethiobiotin| synthase) (DTB synthetase) (DTBS) Length = 226 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -2 Query: 271 CSVARYGVSRGNDDVAVLSELAGVTCASGM 182 C + G +RG+DD+A + LAGVT +G+ Sbjct: 36 CKPVQTGTARGDDDLAEVGRLAGVTQLAGL 65
>BIOD_MYCBO (O52587) Dethiobiotin synthetase (EC 6.3.3.3) (Dethiobiotin| synthase) (DTB synthetase) (DTBS) Length = 226 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -2 Query: 271 CSVARYGVSRGNDDVAVLSELAGVTCASGM 182 C + G +RG+DD+A + LAGVT +G+ Sbjct: 36 CKPVQTGTARGDDDLAEVGRLAGVTQLAGL 65
>MSRB_STAHJ (Q4L6D3) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)| Length = 142 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = -2 Query: 370 YRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVAVL 218 ++++Y NHFD + + G FT+ F +C + S +D++ L Sbjct: 26 FQNEYWNHFDKGIYVDKISGKPLFTSEEKFESNCGWPSFSKSIDDDEIIEL 76
>PURL_DEIRA (Q9RXT4) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 747 Score = 29.6 bits (65), Expect = 4.0 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%) Frame = -2 Query: 394 VHGVVGQTYRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVA--- 224 V+GVV D + H+ +PT+GG+ TF S P +V G+ R ++D+A Sbjct: 143 VNGVV------DGIAHYGNAIGVPTVGGEVTFHPSYQENPLVNVMALGLLR-HEDLATGT 195 Query: 223 ---VLSELAGVTCASGMDGKG 170 V +++ V +G DG G Sbjct: 196 MGEVGNQIVYVGSKTGRDGLG 216
>HLDE_WOLSU (Q7M9U1) Bifunctional protein hldE [Includes: D-beta-D-heptose| 7-phosphate kinase (EC 2.7.1.-) (D-beta-D-heptose 7-phosphotransferase); D-beta-D-heptose 1-phosphate adenosyltransferase (EC 2.7.7.-)] Length = 474 Score = 29.6 bits (65), Expect = 4.0 Identities = 24/67 (35%), Positives = 34/67 (50%) Frame = -2 Query: 355 VNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVAVLSELAGVTCASGMDG 176 V DV+ T+GG A S+L A + SV GV +D+A EL G GM+ Sbjct: 36 VQVIDVKRETKTLGG-ACNVMSNLIALEASVLSCGVV--GEDLAG-RELLGFLQELGMES 91 Query: 175 KGVVCKK 155 KG++ +K Sbjct: 92 KGIITQK 98
>LIP2_ARATH (Q67ZU1) Triacylglycerol lipase 2 precursor (EC 3.1.1.3)| Length = 418 Score = 29.3 bits (64), Expect = 5.2 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 18/126 (14%) Frame = -2 Query: 427 LAFKFDALTDDVHGVVGQTYRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYG- 251 +++ A+ D +HG+ GQ + Y+ H S+ T+ G A+F+ L S A Sbjct: 165 VSYDLPAMFDHIHGLTGQ--KIHYLGH-----SLGTLIGFASFSEKGLVDQVRSAAMLSP 217 Query: 250 ------VSRGNDDVAVLSELAGVTCA---------SGMDGKGV--VCKK*NASCMHMVSV 122 ++ D+A + LA T SG+ G + +C K C +VSV Sbjct: 218 VAYLSHMTTVIGDIAAKTFLAEATSILGWPEFNPKSGLVGDFIKAICLKAGIDCYDLVSV 277 Query: 121 VLAVHC 104 + +C Sbjct: 278 ITGKNC 283
>LRP_CAEEL (Q04833) Low-density lipoprotein receptor-related protein precursor| (LRP) Length = 4753 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 8/55 (14%) Frame = +1 Query: 55 EFMSFAYFCVYSTWQ-----PCNARPVQHSPY---ACKKRFISCTQHLCRPCHWR 195 EF C++STW+ C +H+ +C+ F C H C P W+ Sbjct: 3104 EFRCSNQHCIHSTWECDGDNDCLDGSDEHANCTYSSCQPDFFQCANHKCVPNSWK 3158
>PTH_SYNP6 (Q5N2J4) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 208 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = -3 Query: 276 QTAAWRAMGSAVETTMSRCYLSSLVSPAPVA 184 Q A A+ S VET M+R SL +PAPVA Sbjct: 178 QEATETALRSGVETAMNRYNARSLEAPAPVA 208
>HYPF2_RALEU (O07451) Carbamoyltransferase hypF2 (EC 2.1.3.-) (Carbamoyl| phosphate-converting enzyme hypF2) ([NiFe]-hydrogenase maturation factor hypF2) (Hydrogenase maturation protein hypF2) Length = 806 Score = 29.3 bits (64), Expect = 5.2 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 19/83 (22%) Frame = +1 Query: 79 CVYSTWQPCNARPVQHSPYACKKRFISCTQHLCRPCH---WRR*HQRAQIA--------- 222 C+ + P N R + FI+CTQ C P + W + RA + Sbjct: 124 CLAELFDPANRR--------YRYAFINCTQ--CGPRYTLTWALPYDRATTSMAPFPQCRP 173 Query: 223 -------PRHRRFHG*PHSAPRC 270 P HRRFH P++ P C Sbjct: 174 CLDEYNDPEHRRFHAEPNACPDC 196
>MSRB_STAS1 (Q49XN4) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)| Length = 142 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/51 (21%), Positives = 25/51 (49%) Frame = -2 Query: 370 YRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVAVL 218 ++++Y NHF+ + + G FT+ F DC + + ++++ L Sbjct: 26 FQNEYWNHFEKGIYVDKISGKPLFTSEEKFESDCGWPSFSKALADEEIVEL 76
>MSRB_STAES (Q8CSK6) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)| Length = 142 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/51 (21%), Positives = 25/51 (49%) Frame = -2 Query: 370 YRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVAVL 218 ++++Y NHF+ + + G FT+ F +C + + +D++ L Sbjct: 26 FQNEYWNHFEKGIYVDKLSGKPLFTSEDKFESNCGWPSFSKALNDDEIVEL 76
>MSRB_STAEQ (Q5HPB4) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)| Length = 142 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/51 (21%), Positives = 25/51 (49%) Frame = -2 Query: 370 YRSDYVNHFDVRASMPTMGGDATFTTSSLFAPDCSVARYGVSRGNDDVAVL 218 ++++Y NHF+ + + G FT+ F +C + + +D++ L Sbjct: 26 FQNEYWNHFEKGIYVDKLSGKPLFTSEDKFESNCGWPSFSKALNDDEIVEL 76
>ACM1_RAT (P08482) Muscarinic acetylcholine receptor M1| Length = 460 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/52 (32%), Positives = 22/52 (42%) Frame = -3 Query: 222 CYLSSLVSPAPVAWTAKVLCARNKTLLACIW*VLYWPCIAWLPSGVHTEISK 67 CY++S V+P A K + LL C W W I P VH S+ Sbjct: 407 CYVNSTVNPMCYALCNKAFRDTFRLLLLCRWDKRRWRKIPKRPGSVHRTPSR 458
>ACM1_MOUSE (P12657) Muscarinic acetylcholine receptor M1| Length = 460 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/52 (32%), Positives = 22/52 (42%) Frame = -3 Query: 222 CYLSSLVSPAPVAWTAKVLCARNKTLLACIW*VLYWPCIAWLPSGVHTEISK 67 CY++S V+P A K + LL C W W I P VH S+ Sbjct: 407 CYVNSTVNPMCYASCNKAFRDHFRLLLLCRWDKRRWRKIPKRPGSVHRTPSR 458 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,298,360 Number of Sequences: 219361 Number of extensions: 1264008 Number of successful extensions: 3446 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3328 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3445 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
