ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.001
2dbj|AK071684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.001
3dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.001
4gb|AY104299.1| Zea mays PCO075569 mRNA sequence 44 0.057
5gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 42 0.23
6emb|AL021331.1|HS366N23 Human DNA sequence from clone RP3-366N23... 40 0.89
7gb|AC058785.8|AC058785 Arabidopsis thaliana chromosome 1 BAC F13... 40 0.89
8ref|XM_450198.1| Oryza sativa (japonica cultivar-group), mRNA 38 3.5
9gb|AY333070.1| Drosophila virilis antennapedia (Antp), CG10013 (... 38 3.5
10emb|AL359390.14| Human DNA sequence from clone RP11-139E24 on ch... 38 3.5

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 54       gcacttacaatgatgaggggatgtg 78
                |||||||||||||||||||||||||
Sbjct: 21236823 gcacttacaatgatgaggggatgtg 21236847



to top

>dbj|AK071684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B15, full
            insert sequence
          Length = 1256

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 54   gcacttacaatgatgaggggatgtg 78
            |||||||||||||||||||||||||
Sbjct: 1041 gcacttacaatgatgaggggatgtg 1017



to top

>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone: P0705E11
          Length = 140729

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 54     gcacttacaatgatgaggggatgtg 78
              |||||||||||||||||||||||||
Sbjct: 107580 gcacttacaatgatgaggggatgtg 107604



to top

>gb|AY104299.1| Zea mays PCO075569 mRNA sequence
          Length = 2139

 Score = 44.1 bits (22), Expect = 0.057
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 56   acttacaatgatgaggggatgtgctg 81
            ||||||||||| ||||||||||||||
Sbjct: 1955 acttacaatgacgaggggatgtgctg 1930



to top

>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 64    tgatgaggggatgtgctgttt 84
             |||||||||||||||||||||
Sbjct: 10184 tgatgaggggatgtgctgttt 10204



to top

>emb|AL021331.1|HS366N23 Human DNA sequence from clone RP3-366N23 on chromosome 6q27 Contains
             the UNC93A gene for unc-93 homolog A (C. elegans), the
             gene for NYD-TSPG protein,  a Mitotic Feedback Control
             Protein MADP2 Homolog LIKE pseudogene and the 3' end  of
             the TCP10 gene for t-complex 10 (mouse), complete sequence
          Length = 98517

 Score = 40.1 bits (20), Expect = 0.89
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 51    acggcacttacaatgatgagggga 74
             |||||||||||||| |||||||||
Sbjct: 40880 acggcacttacaatcatgagggga 40903



to top

>gb|AC058785.8|AC058785 Arabidopsis thaliana chromosome 1 BAC F13N6 genomic sequence, complete
             sequence
          Length = 90698

 Score = 40.1 bits (20), Expect = 0.89
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    caatagtacgtatgacacaa 51
             ||||||||||||||||||||
Sbjct: 18466 caatagtacgtatgacacaa 18485



to top

>ref|XM_450198.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 330

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 60  acaatgatgaggggatgtg 78
           |||||||||||||||||||
Sbjct: 301 acaatgatgaggggatgtg 283



to top

>gb|AY333070.1| Drosophila virilis antennapedia (Antp), CG10013 (CG10013), CG31217
             (CG31217), and ultrabithorax (Ubx) genes, complete cds
          Length = 308092

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     catagcaccaagtaggaac 22
             |||||||||||||||||||
Sbjct: 60001 catagcaccaagtaggaac 60019



to top

>emb|AL359390.14| Human DNA sequence from clone RP11-139E24 on chromosome 1, complete
             sequence
          Length = 83750

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 61    caatgatgaggggatgtgctgtt 83
             |||||| ||||||||||||||||
Sbjct: 50395 caatgaagaggggatgtgctgtt 50373


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 422,957
Number of Sequences: 3902068
Number of extensions: 422957
Number of successful extensions: 24039
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24018
Number of HSP's gapped (non-prelim): 21
length of query: 84
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 63
effective length of database: 17,151,101,840
effective search space: 1080519415920
effective search space used: 1080519415920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top