ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart49d07 |
|---|---|
| Clone Library Name | barley_pub |
>VAX2_MOUSE (Q9WTP9) Ventral anterior homeobox 2 (Ventral retina homeodomain| protein) Length = 292 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Frame = +1 Query: 292 ALMIHVPGFPGLAETHR-----NPVHSLPRLASTGIASAAWPKP 408 +L+ PG PGL +HR +P +S PRL ASA+ P P Sbjct: 199 SLLALTPGLPGLPASHRGTSLVDPRNSSPRLNPMPSASASSPLP 242
>SYL_PORGI (Q7MW49) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 925 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -3 Query: 221 EYLGLTRANYALRDAVFSRPR 159 ++LG + NY LRDA+FSR R Sbjct: 465 KHLGCVKVNYRLRDAIFSRQR 485
>SYI_ENTFA (Q836V1) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 926 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/62 (32%), Positives = 25/62 (40%) Frame = +2 Query: 11 WSFIYSMEKLLQLATQCNKPSRHALKQQESIFKTWMHLHLHLQEKN*FRDEVLKTRRHAA 190 WSF+ E+ +QLA P +E + TW FRD VLK A Sbjct: 767 WSFLQEEEEYVQLA---EFPGYETFTNEEELMDTWAAFMD-------FRDNVLKALEEAR 816 Query: 191 HS 196 HS Sbjct: 817 HS 818
>MURB_TREPA (O83128) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 354 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Frame = -3 Query: 464 GSPTITQTVWTTFPNDTDFGFGHAALAMP--VDANLGRLCTGFLCVSAKPGNP 312 G P + T F D+G+ + P V+ + GR LCV PGNP Sbjct: 186 GGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGNP 238
>EURL_MOUSE (Q9D7G4) Protein EURL homolog| Length = 290 Score = 29.6 bits (65), Expect = 4.0 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 2 KANWSFIYSMEKLLQLATQCNKPSRHAL 85 K NW Y+ K L L ++C+K S+H L Sbjct: 93 KINWIVQYAQNKNLDLESECSKTSQHPL 120
>CAC1E_DISOM (P56699) Probable voltage-dependent R-type calcium channel alpha-1E| subunit (Voltage-gated calcium channel alpha subunit Cav2.3) (DOE-1) Length = 2223 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Frame = -1 Query: 373 TPTSAGCARGFCASPPS-RETQERGSSAPSYGLASRPRXXXXXXXXXXXSPRSTLVLP 203 +P + C+ G CA P R +R S +PS G + RPR P S+ P Sbjct: 2009 SPERSVCSTGQCAHPSQHRGLDQRLSRSPSPGYSHRPREQVNSSVSESPVPSSSGTSP 2066
>SYL_BACFR (Q64MG4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 943 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/63 (30%), Positives = 30/63 (47%) Frame = -3 Query: 347 GFLCVSAKPGNPGTWIISAFIWPRLAAALESDQQRVFKPLTAEYLGLTRANYALRDAVFS 168 G + S +PG P ++ + + A A + + A LG + N+ LRDA+FS Sbjct: 431 GIMMNSPRPGAPEGGLVLNGLTVKEAIAKTKEY------IKATGLGRVKVNFRLRDAIFS 484 Query: 167 RPR 159 R R Sbjct: 485 RQR 487
>RL11_ENCCU (Q8SSG9) 60S ribosomal protein L11| Length = 165 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = -3 Query: 428 FPNDTDFGFG---HAALAMPVDANLGRLCTGFLCVSAKPGN 315 F N+ FGFG H L + D N+G F + A+PG+ Sbjct: 88 FSNNGCFGFGIEEHIDLGLKYDPNIGIFGMDFFVILARPGD 128
>SYL_BACTN (Q8A329) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 944 Score = 28.9 bits (63), Expect = 6.8 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -3 Query: 215 LGLTRANYALRDAVFSRPR 159 LG + NY LRDA+FSR R Sbjct: 470 LGRVKVNYRLRDAIFSRQR 488
>BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kDa| bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragment) Length = 3214 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = +1 Query: 313 GFPGLAETHRNPVHSLPRLASTG 381 GFP LAET ++P+ LP +AS G Sbjct: 11 GFPRLAETLQHPMCPLPLVASAG 33
>MGR5_RAT (P31424) Metabotropic glutamate receptor 5 precursor (mGluR5)| Length = 1203 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 371 ANLGRLCTGFLCVSAKPGNPGTWIISAFIWPR 276 AN+ L + L +A PG PGT I S+++ P+ Sbjct: 1066 ANISELNSMMLSTAATPGPPGTPICSSYLIPK 1097
>ARPA_ECOLI (P23325) Ankyrin-repeat protein A (Ankyrin-like regulatory protein)| Length = 728 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = -3 Query: 344 FLCVSAKPGNPGTWIISAFIWPRLAAALESDQQRVFKPLTAE 219 FL +S K N T I++A P+LAA D ++V+K L+A+ Sbjct: 435 FLAISRKDKNVVTSILNAL--PKLAATHHLDNEQVYKFLSAK 474
>VAX2_HUMAN (Q9UIW0) Ventral anterior homeobox 2| Length = 290 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Frame = +1 Query: 292 ALMIHVPGFPGLAETHR-----NPVHSLPRLASTGIASAAWPKP 408 +L+ P PGL +HR +P +S PRL ASA+ P P Sbjct: 199 SLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPPLP 242
>SALM_DROVI (P39806) Homeotic protein spalt-major| Length = 1402 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +1 Query: 310 PGFPGLAETHRNPVHSLPRLASTGIASAAWPKP 408 P FPGL +R P+ L L +T ++A P P Sbjct: 548 PAFPGLPGIYRPPMELLKSLGATAGSTAGLPHP 580 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,698,803 Number of Sequences: 219361 Number of extensions: 1164755 Number of successful extensions: 3319 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3206 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3319 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
