ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart49d06 |
|---|---|
| Clone Library Name | barley_pub |
>AMR1_ARATH (Q9ZVJ2) Protein At2g38710| Length = 214 Score = 112 bits (281), Expect = 5e-25 Identities = 51/81 (62%), Positives = 66/81 (81%) Frame = -3 Query: 512 NVRRSGTYLPEVAAHEGWTQLEAIDSLMRKAGYNGTITESLRKKIRVTRYQSTLYTMQYG 333 N +RS TYLPEV AHEGWT++EAIDSL+RKAGYNG ITE++R++I +TRYQSTL++M Y Sbjct: 129 NTKRSATYLPEVPAHEGWTKIEAIDSLVRKAGYNGVITEAVRRRINLTRYQSTLFSMHYS 188 Query: 332 EYTAYVKKNRGEINGASIVNG 270 EY +YVK RG + ++NG Sbjct: 189 EYLSYVKATRGVV--GPVING 207
>AMER1_MOUSE (Q9JHT5) AMME syndrome candidate gene 1 protein homolog| Length = 344 Score = 74.3 bits (181), Expect = 2e-13 Identities = 32/63 (50%), Positives = 43/63 (68%) Frame = -3 Query: 506 RRSGTYLPEVAAHEGWTQLEAIDSLMRKAGYNGTITESLRKKIRVTRYQSTLYTMQYGEY 327 +R+ TYLPEVA +GW ++ IDSL+RK GY IT RK I++TRY+S T+ Y EY Sbjct: 261 KRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEY 320 Query: 326 TAY 318 A+ Sbjct: 321 LAH 323
>AMER1_HUMAN (Q9Y4X0) AMME syndrome candidate gene 1 protein| Length = 333 Score = 74.3 bits (181), Expect = 2e-13 Identities = 32/63 (50%), Positives = 43/63 (68%) Frame = -3 Query: 506 RRSGTYLPEVAAHEGWTQLEAIDSLMRKAGYNGTITESLRKKIRVTRYQSTLYTMQYGEY 327 +R+ TYLPEVA +GW ++ IDSL+RK GY IT RK I++TRY+S T+ Y EY Sbjct: 250 KRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEY 309 Query: 326 TAY 318 A+ Sbjct: 310 LAH 312
>Y5902_DROME (Q9VCF0) Protein CG5902| Length = 243 Score = 74.3 bits (181), Expect = 2e-13 Identities = 33/66 (50%), Positives = 44/66 (66%) Frame = -3 Query: 506 RRSGTYLPEVAAHEGWTQLEAIDSLMRKAGYNGTITESLRKKIRVTRYQSTLYTMQYGEY 327 +R+ TYLP+VA +GW QL+ IDSL+RK GY IT RK I++TRY+S M Y EY Sbjct: 169 KRTATYLPQVATEQGWDQLQTIDSLLRKGGYRAAITPETRKSIKLTRYRSQEIQMHYKEY 228 Query: 326 TAYVKK 309 Y ++ Sbjct: 229 REYQER 234
>AMER1_CAEEL (Q22004) Hypothetical protein R166.3 in chromosome II| Length = 200 Score = 67.8 bits (164), Expect = 2e-11 Identities = 30/68 (44%), Positives = 45/68 (66%) Frame = -3 Query: 503 RSGTYLPEVAAHEGWTQLEAIDSLMRKAGYNGTITESLRKKIRVTRYQSTLYTMQYGEYT 324 RS +LPEVA +GW +E ID L+RK+GY G I ++LR +R+ R+QS+ + Y +Y Sbjct: 129 RSAVFLPEVAQEQGWNHVETIDHLIRKSGYGGHINDALRSALRIVRFQSSKLVLDYKDYV 188 Query: 323 AYVKKNRG 300 Y K++ G Sbjct: 189 NY-KQSHG 195
>YKQ3_SCHPO (Q9P6M2) Hypothetical protein C688.03c in chrmosome I| Length = 204 Score = 52.0 bits (123), Expect = 1e-06 Identities = 28/61 (45%), Positives = 36/61 (59%) Frame = -3 Query: 509 VRRSGTYLPEVAAHEGWTQLEAIDSLMRKAGYNGTITESLRKKIRVTRYQSTLYTMQYGE 330 +R S TYLP VAA + W Q E ++SL+ KAGY G+I +I TRY+S Y E Sbjct: 139 IRYSSTYLPSVAAEQRWDQEETLESLIHKAGYYGSIRS---LQITATRYKSLEIGCTYEE 195 Query: 329 Y 327 Y Sbjct: 196 Y 196
>Y464_KLULA (Q9URS8) Hypothetical protein KLLA0D02464g| Length = 227 Score = 40.4 bits (93), Expect = 0.003 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = -3 Query: 512 NVRRSGTYLPEVAAHEGWTQLEAIDSLMRKAGYNGTITESLRKKIR----VTRYQSTLYT 345 N R S T+LPEV +GW Q E ++L+ KAG + E ++ + V RY+ T Sbjct: 151 NSRMSATFLPEVIPEQGWDQRETFENLIEKAGCWNYLEEVMKHWEKYFDEVIRYEGTKSE 210 Query: 344 MQYGEY 327 + + E+ Sbjct: 211 IAWDEF 216
>YO289_YEAST (Q12012) Protein YOR289W| Length = 251 Score = 39.3 bits (90), Expect = 0.006 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Frame = -3 Query: 500 SGTYLPEVAAHEGWTQLEAIDSLMRKAGYNGTITESLRK----KIRVTRYQSTLYTMQYG 333 S T+LP+V + W + + +L+ KAGY G I+E + I V RY+ ++ Y Sbjct: 181 SATFLPDVMPEQHWNKEDTFANLIEKAGYWGNISEVMDNFETYFIEVIRYEGKKSSITYE 240 Query: 332 EYTAYVK 312 E+ +K Sbjct: 241 EFNKQLK 247
>VATC_DESSY (O06502) V-type ATP synthase subunit C (EC 3.6.3.14) (V-type ATPase| subunit C) Length = 364 Score = 37.4 bits (85), Expect = 0.025 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = -3 Query: 497 GTYLPEVAAHEGWTQLEAIDSLMRKAGYNGTITESLRKKIRVTRYQSTLYTMQYGEYTAY 318 GT LP+V A LE I ++ Y + L +I VTR+++ LY M YG+ +Y Sbjct: 149 GTMLPKVKAMAEAKTLEEILVILEGTPYEEVYQKLLLGEIDVTRFETELYRMHYGKLLSY 208 Query: 317 VKKNRGE 297 + + Sbjct: 209 ALSRKDD 215
>YV4Q_CAEEL (O45435) Hypothetical protein F32B6.9 in chromosome IV| Length = 413 Score = 33.1 bits (74), Expect = 0.46 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -2 Query: 246 LSVAGNIIIYNLAWKQLVWEFVWKNQFLPLICHHAFR 136 +S +GN+I L WK +W WK + LI +++ R Sbjct: 3 ISYSGNVIRILLRWKGSIWRTAWKELLIYLILYYSVR 39
>VATC_PYRKO (Q5JDR9) V-type ATP synthase subunit C (EC 3.6.3.14) (V-type ATPase| subunit C) Length = 365 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/67 (26%), Positives = 30/67 (44%) Frame = -3 Query: 497 GTYLPEVAAHEGWTQLEAIDSLMRKAGYNGTITESLRKKIRVTRYQSTLYTMQYGEYTAY 318 G LP+V A LE I ++ Y G E + I V+ +++ LY M Y + Y Sbjct: 150 GPMLPKVKAMAEAKTLEEILVILEGTPYEGPYQELIAGNIDVSTFETELYRMYYKKLLNY 209 Query: 317 VKKNRGE 297 + + + Sbjct: 210 ARSRKDD 216
>LGP1_HUMAN (Q8N2G8) Protein D11Lgp1 homolog precursor| Length = 530 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Frame = -2 Query: 219 YNLAWKQLVWEFVWKNQFLPLICHHAFRSKE-----CGVPCQRPPCHLRQ 85 + +AW LVW W+ + L H +S++ C QRP C LR+ Sbjct: 37 HRVAWGALVWAATWQRRRLEQSTLHVHQSQQQALRWCLQGAQRPHCSLRR 86
>Y488_METKA (Q8TY18) Protein MK0488| Length = 207 Score = 31.2 bits (69), Expect = 1.8 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -3 Query: 503 RSGTYLPEVAAHEGWTQLEAIDSLMRKAG 417 RSG LP+V EGW ++E + KAG Sbjct: 140 RSGLLLPQVPVEEGWDEIEFLSHACLKAG 168
>Y1056_AERPE (Q9YD56) Protein APE1056| Length = 203 Score = 30.8 bits (68), Expect = 2.3 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = -3 Query: 500 SGTYLPEVAAHEGWTQLEAIDSLMRKAGYNGTITESLRKKIRVTRYQSTLY 348 +G LP+VA EGW + + KAG GT LR+ + + R+++ ++ Sbjct: 127 AGLLLPQVAVDEGWDPILFLTWACIKAGLPGTCW--LREDVEIYRFRAAVW 175
>YCEL_CAEEL (Q94175) Hypothetical protein C43G2.4 in chromosome IV| Length = 399 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -2 Query: 246 LSVAGNIIIYNLAWKQLVWEFVWKNQFLPLICHHAFR 136 +S +GN L WK +W VW+ FL L + R Sbjct: 3 ISYSGNFFRLLLRWKGSIWRSVWRELFLFLFLFYFIR 39
>ZNFX1_MOUSE (Q8R151) NFX1-type zinc finger-containing protein 1| Length = 1909 Score = 30.0 bits (66), Expect = 3.9 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -2 Query: 153 CHHAFRSKECGVPCQRPPCHL 91 C H +K C PC RPPC++ Sbjct: 1510 CQHYQCTKLCSEPCNRPPCYV 1530
>ZNFX1_HUMAN (Q9P2E3) NFX1-type zinc finger-containing protein 1| Length = 1918 Score = 30.0 bits (66), Expect = 3.9 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -2 Query: 153 CHHAFRSKECGVPCQRPPCHL 91 C H +K C PC RPPC++ Sbjct: 1518 CQHYQCTKLCSEPCNRPPCYV 1538
>MPP4_RAT (Q9QYH1) MAGUK p55 subfamily member 4 (Discs large homolog 6)| (rDLG6) Length = 441 Score = 30.0 bits (66), Expect = 3.9 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = -2 Query: 273 WIQTRPVIYLSVAGNIIIYNLAWKQLVWEFVWKNQFLPLICHHAFRSKE 127 W Q R + +++ +I N K+ EF W + P C + RSKE Sbjct: 135 WWQARKISDIAICAGLIPSNHLLKRKQREFWWSQPYQPHTCLKSTRSKE 183
>YBM9_SCHPO (Q10333) Hypothetical protein C582.09 in chromosome II| Length = 238 Score = 29.3 bits (64), Expect = 6.7 Identities = 22/117 (18%), Positives = 47/117 (40%) Frame = +1 Query: 109 LTWHPTFFGTKCMMADQWQELIFPNKFPHQLLPSQIINNYITCYRQINHWPGLNPLTMDA 288 L+WH + G+ ++W++L F +L + +YI C + NPL+ + Sbjct: 37 LSWHLFYGGSSLSTVNKWKKLESNISFSRKLFSIGKVLDYI-CKVYFDSLKLQNPLSGNK 95 Query: 289 PLISPLFFLTYAVYSPYCMVYRVLW*RVTRIFFLKDSVMVPL*PAFLMSESIASSCV 459 + + F ++ Y + W T + S + ++ ++ SSC+ Sbjct: 96 SALPTISFTKDVAFAGYATAELIGWFNKTELMPCSHSKQISTIGKQCLAVALLSSCL 152
>GLTL1_MOUSE (Q9JJ61) Putative polypeptide| N-acetylgalactosaminyltransferase-like protein 1 (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase-like protein 1) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like protein 1) (Polypeptide G Length = 558 Score = 29.3 bits (64), Expect = 6.7 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +3 Query: 102 GAVDMAPHILWNEMHDGRSMARTDFSKQIPTPI 200 G D + H W ++ + M RTD +K I TP+ Sbjct: 259 GGFDWSLHFKWEQIPLEQKMTRTDLTKPIRTPV 291
>V216_FOWPV (Q9J519) Putative ankyrin repeat protein FPV216| Length = 296 Score = 29.3 bits (64), Expect = 6.7 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +3 Query: 186 IPTPIASKPNYK*LYYLLQTDKSLAWFESINYGCPVNFTSVLLDICSIF-TVLHG 347 IP P++ L Y ++ D A I YG VN S L I ++ +VLHG Sbjct: 65 IPFPLSENSYVNPLIYAIECDNHDAILSLIRYGADVNTYSNYLVITPLYISVLHG 119
>ORC3_MOUSE (Q9JK30) Origin recognition complex subunit 3 (Origin recognition| complex subunit Latheo) Length = 715 Score = 28.9 bits (63), Expect = 8.7 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -2 Query: 366 LPKYPVHHAVR*IYCICQEEQ 304 LPKYP+ +R +YC C E++ Sbjct: 432 LPKYPLGRQIRELYCTCLEKK 452 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,457,954 Number of Sequences: 219361 Number of extensions: 1716724 Number of successful extensions: 4374 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4235 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4372 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
