ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OSH1_YEAST (P35845) Oxysterol-binding protein homolog 1 31 1.6
2RAD9_SCHPO (P26306) DNA repair protein rad9 30 2.7
3GDB1_WHEAT (P04729) Gamma-gliadin B-I precursor 30 2.7
4NPBL_CAEEL (Q95XZ5) Nipped-B-like protein pqn-85 (Prion-like-(Q/... 30 3.5
5OPGB_XANAC (Q8PQA7) Phosphoglycerol transferase I (EC 2.7.8.20) ... 30 4.6
6GTSE1_HUMAN (Q9NYZ3) G2 and S phase expressed protein 1 (B99 hom... 30 4.6
7RTP1_HUMAN (P59025) Receptor-transporting protein 1 30 4.6
8FG17B_BRARE (Q6SJP8) Fibroblast growth factor 17b precursor (FGF... 29 6.0
9MIAA_CHLPN (Q9Z6Z6) tRNA delta(2)-isopentenylpyrophosphate trans... 29 7.8
10HEM6_SYNP6 (Q5N3S5) Coproporphyrinogen 3 oxidase, aerobic (EC 1.... 29 7.8
11RTP1_MACFA (Q95JK0) Receptor-transporting protein 1 29 7.8

>OSH1_YEAST (P35845) Oxysterol-binding protein homolog 1|
          Length = 1188

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 449  KKIRDTKGEKFTPKWFKMTEDISPTPWGDLEVYEYNGRYTEHR 321
            KK R+ KGE++ PKWF   E     P      +++NG Y   R
Sbjct: 1138 KKEREQKGEEYRPKWFVQEEH----PVTKSLYWKFNGEYWNKR 1176



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>RAD9_SCHPO (P26306) DNA repair protein rad9|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -1

Query: 341 GRYTEHRAAIDSSSVVVAEETDVSSIEFNPWQYGDSPSQ*FQRV 210
           G+ +E  A    ++VV ++E +VSS+  N WQ+  +P+  F  V
Sbjct: 286 GKNSEIEAQFILATVVGSDEQEVSSMMGNRWQHSSTPASLFNSV 329



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>GDB1_WHEAT (P04729) Gamma-gliadin B-I precursor|
          Length = 304

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 256 LNSMELTSVSSATTTLELSIAARCSVYLPLYSYTSRSPHGVG 381
           L   ++  + + T+    ++   CSV +PLYS T+  P GVG
Sbjct: 257 LQPHQIAHLEAVTSIALRTLPTMCSVNVPLYSATTSVPFGVG 298



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>NPBL_CAEEL (Q95XZ5) Nipped-B-like protein pqn-85|
           (Prion-like-(Q/n-rich)-domain-bearing protein 85) (SCC2
           homolog)
          Length = 2203

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 398 MTEDISPTPWGDLEVYEYNGRYTEHRAAIDSSSVVVAEETDVSSIEFN 255
           MTEDI+ T         YN  +      + SSSV ++E T  SS+  N
Sbjct: 455 MTEDITRTTAPSTSSSSYNNHHQNSIVMMTSSSVSMSEATQSSSVTMN 502



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>OPGB_XANAC (Q8PQA7) Phosphoglycerol transferase I (EC 2.7.8.20)|
           (Phosphatidylglycerol--membrane-oligosaccharide
           glycerophosphotransferase)
          Length = 702

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +3

Query: 150 WISAQGLKAFLMRSNIWVASDPLKSLGRRVAIL--PRVELDGADVRLLGDDHARAVYRGP 323
           W+ A  L  FL+  + W   D L   G   A L   R ++DGA V         AV+ G 
Sbjct: 24  WLKAGLLSLFLLLLSAWGLVDRLSGDGINAATLYHLRADMDGAGVSDFSG--YIAVFVGM 81

Query: 324 -VLGVSAVVLVHLQ--VAPRGRGDVF 392
            +L +S ++LV ++    PRG G VF
Sbjct: 82  LLLSLSPLLLVRIRRFQRPRGGGAVF 107



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>GTSE1_HUMAN (Q9NYZ3) G2 and S phase expressed protein 1 (B99 homolog)|
          Length = 720

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -2

Query: 475 RLKNNNEPRRKSGTPRGRSSLQNGSR*RKTSPLPRGATWRCTSTTADTPSTGPR 314
           R+  ++ P R+S  P  +S L      R+ S LP  A+ RC+     TP T PR
Sbjct: 483 RVTVHSTPVRRSSGPAPQSLLSA----RRVSALPTPASRRCSGLPPMTPKTMPR 532



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>RTP1_HUMAN (P59025) Receptor-transporting protein 1|
          Length = 263

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 142 GFRAFVVLYMTFHFFCSWC-HTVQDVIVYLM*SIFCCRKSR 23
           G++ ++ L+ +  F CSWC HT Q   V ++  +F  R  R
Sbjct: 79  GWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQR 119



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>FG17B_BRARE (Q6SJP8) Fibroblast growth factor 17b precursor (FGF-17b)|
          Length = 215

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 121 LYMTFHFFCSWCH 83
           LY++FHFF  WCH
Sbjct: 9   LYISFHFFVVWCH 21



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>MIAA_CHLPN (Q9Z6Z6) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 342

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 27/98 (27%), Positives = 42/98 (42%)
 Frame = +3

Query: 117 YNTTKARKPPVWISAQGLKAFLMRSNIWVASDPLKSLGRRVAILPRVELDGADVRLLGDD 296
           +NTT + +  V +  Q L   L +  I + S P  S    V++     +DG  V +    
Sbjct: 8   FNTTSSPECDVCLDPQKLFVKLFKRTIVLLSGPTGSGKTDVSLALAPMIDGEIVSV---- 63

Query: 297 HARAVYRGPVLGVSAVVLVHLQVAPRGRGDVFRHLEPF 410
            +  VY+G  +G + V L   Q  P    D+    EPF
Sbjct: 64  DSMQVYQGMDIGTAKVSLKARQEIPHHLIDIRHVQEPF 101



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>HEM6_SYNP6 (Q5N3S5) Coproporphyrinogen 3 oxidase, aerobic (EC 1.3.3.3)|
           (Coproporphyrinogen III oxidase, aerobic)
           (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 342

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = -1

Query: 428 GEKFTPKWFKMTEDISPTPWGDLE----VYEYNGRYTEHRAAIDSSSV 297
           G  F P +  + E    TPWGD E    +Y   GRY E     D  ++
Sbjct: 243 GRTFLPAYSPIVERRKDTPWGDRERQFQLYR-RGRYVEFNLVYDRGTI 289



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>RTP1_MACFA (Q95JK0) Receptor-transporting protein 1|
          Length = 263

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 142 GFRAFVVLYMTFHFFCSWC-HTVQDVIVYLM*SIFCCRKSR 23
           G++ +V L+ +  F CSWC HT Q   + ++  +F  R  R
Sbjct: 79  GWKQYVELHASGRFHCSWCWHTWQSPHLVILFHMFLDRAQR 119


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,413,218
Number of Sequences: 219361
Number of extensions: 1471258
Number of successful extensions: 4901
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4901
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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