Clone Name | rbart49d03 |
---|---|
Clone Library Name | barley_pub |
>OSH1_YEAST (P35845) Oxysterol-binding protein homolog 1| Length = 1188 Score = 31.2 bits (69), Expect = 1.6 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -1 Query: 449 KKIRDTKGEKFTPKWFKMTEDISPTPWGDLEVYEYNGRYTEHR 321 KK R+ KGE++ PKWF E P +++NG Y R Sbjct: 1138 KKEREQKGEEYRPKWFVQEEH----PVTKSLYWKFNGEYWNKR 1176
>RAD9_SCHPO (P26306) DNA repair protein rad9| Length = 426 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = -1 Query: 341 GRYTEHRAAIDSSSVVVAEETDVSSIEFNPWQYGDSPSQ*FQRV 210 G+ +E A ++VV ++E +VSS+ N WQ+ +P+ F V Sbjct: 286 GKNSEIEAQFILATVVGSDEQEVSSMMGNRWQHSSTPASLFNSV 329
>GDB1_WHEAT (P04729) Gamma-gliadin B-I precursor| Length = 304 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +1 Query: 256 LNSMELTSVSSATTTLELSIAARCSVYLPLYSYTSRSPHGVG 381 L ++ + + T+ ++ CSV +PLYS T+ P GVG Sbjct: 257 LQPHQIAHLEAVTSIALRTLPTMCSVNVPLYSATTSVPFGVG 298
>NPBL_CAEEL (Q95XZ5) Nipped-B-like protein pqn-85| (Prion-like-(Q/n-rich)-domain-bearing protein 85) (SCC2 homolog) Length = 2203 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = -1 Query: 398 MTEDISPTPWGDLEVYEYNGRYTEHRAAIDSSSVVVAEETDVSSIEFN 255 MTEDI+ T YN + + SSSV ++E T SS+ N Sbjct: 455 MTEDITRTTAPSTSSSSYNNHHQNSIVMMTSSSVSMSEATQSSSVTMN 502
>OPGB_XANAC (Q8PQA7) Phosphoglycerol transferase I (EC 2.7.8.20)| (Phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase) Length = 702 Score = 29.6 bits (65), Expect = 4.6 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 5/86 (5%) Frame = +3 Query: 150 WISAQGLKAFLMRSNIWVASDPLKSLGRRVAIL--PRVELDGADVRLLGDDHARAVYRGP 323 W+ A L FL+ + W D L G A L R ++DGA V AV+ G Sbjct: 24 WLKAGLLSLFLLLLSAWGLVDRLSGDGINAATLYHLRADMDGAGVSDFSG--YIAVFVGM 81 Query: 324 -VLGVSAVVLVHLQ--VAPRGRGDVF 392 +L +S ++LV ++ PRG G VF Sbjct: 82 LLLSLSPLLLVRIRRFQRPRGGGAVF 107
>GTSE1_HUMAN (Q9NYZ3) G2 and S phase expressed protein 1 (B99 homolog)| Length = 720 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = -2 Query: 475 RLKNNNEPRRKSGTPRGRSSLQNGSR*RKTSPLPRGATWRCTSTTADTPSTGPR 314 R+ ++ P R+S P +S L R+ S LP A+ RC+ TP T PR Sbjct: 483 RVTVHSTPVRRSSGPAPQSLLSA----RRVSALPTPASRRCSGLPPMTPKTMPR 532
>RTP1_HUMAN (P59025) Receptor-transporting protein 1| Length = 263 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -2 Query: 142 GFRAFVVLYMTFHFFCSWC-HTVQDVIVYLM*SIFCCRKSR 23 G++ ++ L+ + F CSWC HT Q V ++ +F R R Sbjct: 79 GWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQR 119
>FG17B_BRARE (Q6SJP8) Fibroblast growth factor 17b precursor (FGF-17b)| Length = 215 Score = 29.3 bits (64), Expect = 6.0 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -2 Query: 121 LYMTFHFFCSWCH 83 LY++FHFF WCH Sbjct: 9 LYISFHFFVVWCH 21
>MIAA_CHLPN (Q9Z6Z6) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 342 Score = 28.9 bits (63), Expect = 7.8 Identities = 27/98 (27%), Positives = 42/98 (42%) Frame = +3 Query: 117 YNTTKARKPPVWISAQGLKAFLMRSNIWVASDPLKSLGRRVAILPRVELDGADVRLLGDD 296 +NTT + + V + Q L L + I + S P S V++ +DG V + Sbjct: 8 FNTTSSPECDVCLDPQKLFVKLFKRTIVLLSGPTGSGKTDVSLALAPMIDGEIVSV---- 63 Query: 297 HARAVYRGPVLGVSAVVLVHLQVAPRGRGDVFRHLEPF 410 + VY+G +G + V L Q P D+ EPF Sbjct: 64 DSMQVYQGMDIGTAKVSLKARQEIPHHLIDIRHVQEPF 101
>HEM6_SYNP6 (Q5N3S5) Coproporphyrinogen 3 oxidase, aerobic (EC 1.3.3.3)| (Coproporphyrinogen III oxidase, aerobic) (Coproporphyrinogenase) (Coprogen oxidase) Length = 342 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Frame = -1 Query: 428 GEKFTPKWFKMTEDISPTPWGDLE----VYEYNGRYTEHRAAIDSSSV 297 G F P + + E TPWGD E +Y GRY E D ++ Sbjct: 243 GRTFLPAYSPIVERRKDTPWGDRERQFQLYR-RGRYVEFNLVYDRGTI 289
>RTP1_MACFA (Q95JK0) Receptor-transporting protein 1| Length = 263 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -2 Query: 142 GFRAFVVLYMTFHFFCSWC-HTVQDVIVYLM*SIFCCRKSR 23 G++ +V L+ + F CSWC HT Q + ++ +F R R Sbjct: 79 GWKQYVELHASGRFHCSWCWHTWQSPHLVILFHMFLDRAQR 119 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,413,218 Number of Sequences: 219361 Number of extensions: 1471258 Number of successful extensions: 4901 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4802 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4901 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)