ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009302.1| Triticum aestivum clone wlm1.pk0014.e3:fis, full ... 597 e-167
2dbj|AK119251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
3dbj|AK060769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 72 2e-09
5gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare str... 72 2e-09
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
7gb|AY103776.1| Zea mays PCO077793 mRNA sequence 68 3e-08
8gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete... 42 1.7
9emb|AL807373.1|NC21D9 Neurospora crassa DNA linkage group V cosm... 42 1.7
10gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, ... 42 1.7
11gb|AC084652.1|CBRG45O11 Caenorhabditis briggsae cosmid G45O11, c... 42 1.7
12gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, r... 42 1.7
13gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34... 42 1.7
14ref|XM_478238.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
15ref|XM_362059.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.6
16gb|AC149790.1| Pan troglodytes chromosome X clone PTB-089K20, co... 40 6.6
17ref|XM_452372.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C03938g ... 40 6.6
18ref|XM_804221.1| Trypanosoma cruzi strain CL Brener protein kina... 40 6.6
19ref|XM_804530.1| Trypanosoma cruzi strain CL Brener protein kina... 40 6.6
20emb|AL390037.16| Human DNA sequence from clone RP5-851M4 on chro... 40 6.6
21ref|XM_792977.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.6
22emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.6
23gb|AC023344.4|AC023344 Homo sapiens BAC clone RP11-395G23 from 8... 40 6.6
24dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
25dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
26emb|AL807248.7| Mouse DNA sequence from clone RP23-400M20 on chr... 40 6.6
27gb|AC012435.13| Homo sapiens chromosome 15, clone RP11-10O17, co... 40 6.6
28dbj|AP003353.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 6.6

>gb|BT009302.1| Triticum aestivum clone wlm1.pk0014.e3:fis, full insert mRNA sequence
          Length = 1264

 Score =  597 bits (301), Expect = e-167
 Identities = 435/472 (92%), Gaps = 12/472 (2%)
 Strand = Plus / Minus

                                                                        
Query: 24   ctagacttacgacaacagaatatggactacatcaaatacacaatcacatcctgaactgta 83
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 ctagacttacgacaacagaatatggactacatcaaatacacaatcacatcctgaactgta 1150

                                                                        
Query: 84   tgacaccatgaacagaaaaa-gtggaaagtcatatataacactacaaaggcacgaaaacc 142
            | ||| |||||| ||||||| |||||||||||||||  | ||||||| ||||||||||||
Sbjct: 1149 tcacagcatgaagagaaaaaagtggaaagtcatata--atactacaa-ggcacgaaaacc 1093

                                                                        
Query: 143  gccggtatggatatcagcacaaggcctgaaagcgtttttgatgagaagt--aatatatgg 200
             |||||||||||  |||||||||||||||||||||||| ||||||||    |||||||||
Sbjct: 1092 accggtatggat--cagcacaaggcctgaaagcgttttagatgagaaaataaatatatgg 1035

                                                                        
Query: 201  gtggcttcagaccctttgaaatcattgggaaggcgagtcgccatactgccacgggttgaa 260
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 gtggcttcagaccctttcaaatcattgggaaggcgagtcgccatactgccacgggttgaa 975

                                                                        
Query: 261  ctcgatggagctgacgtccgtctcctcggcgacgaccacgctagagctgtctatcgcggc 320
            |||||||||||||||||||||||||||||| |||    | ||||||||||||||||| ||
Sbjct: 974  ctcgatggagctgacgtccgtctcctcggcaacg---gcactagagctgtctatcgcagc 918

                                                                        
Query: 321  ccggtgctcggtgtatctgccgttgtactcgtacacctccaggtcgccccacggggtagg 380
            ||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct: 917  ccggtgctcggcgtatctgccattgtactcatacacctccagatcgccccacggggtagg 858

                                                                        
Query: 381  ggagatgtcttccgtcatcttgaaccattttggagtgaacttctcccccttggtgtcccg 440
            |||||||||||| ||||| |||||||||||||| || |||| ||||||||||||||||||
Sbjct: 857  ggagatgtcttcggtcattttgaaccattttggtgtaaactgctcccccttggtgtcccg 798

                                                                
Query: 441  gattttcttctcggctcgttgttgttcttc-agcctgctcttatgtgcccca 491
            |||||||||||| |||| |||||||||||| ||||||||||| |||||||||
Sbjct: 797  gattttcttctcagctctttgttgttcttcaagcctgctcttgtgtgcccca 746



to top

>dbj|AK119251.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D09, full
           insert sequence
          Length = 821

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 190/239 (79%), Gaps = 4/239 (1%)
 Strand = Plus / Minus

                                                                       
Query: 244 tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 303
           ||||||||||||||||| ||||| ||  ||||||| || || ||| || |   ||| || 
Sbjct: 583 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 527

                                                                       
Query: 304 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 363
           |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| 
Sbjct: 526 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 467

                                                                       
Query: 364 tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 423
           |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | |
Sbjct: 466 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 407

                                                                      
Query: 424 tcccccttggtgtcccggattttcttctcggctcgttgttgttcttc-agcctgctctt 481
           ||||||||||  || ||  || | ||||| |||| |||||| ||||| |||||||||||
Sbjct: 406 tcccccttggcctctcgtgttcttttctcagctctttgttgctcttcaagcctgctctt 348



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 38  acagaatatggactacatcaaatacacaatcacatcctgaac 79
           |||| |||||||||||||| ||||||| ||||| ||||||||
Sbjct: 794 acagtatatggactacatcgaatacaccatcacttcctgaac 753



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 118 ataacactacaaaggcacgaaaac 141
           |||| |||||||||||||||||||
Sbjct: 718 ataatactacaaaggcacgaaaac 695



to top

>dbj|AK060769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B01, full
            insert sequence
          Length = 1898

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 190/239 (79%), Gaps = 4/239 (1%)
 Strand = Plus / Minus

                                                                        
Query: 244  tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 303
            ||||||||||||||||| ||||| ||  ||||||| || || ||| || |   ||| || 
Sbjct: 1660 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 1604

                                                                        
Query: 304  gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 363
            |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| 
Sbjct: 1603 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 1544

                                                                        
Query: 364  tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 423
            |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | |
Sbjct: 1543 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 1484

                                                                       
Query: 424  tcccccttggtgtcccggattttcttctcggctcgttgttgttcttc-agcctgctctt 481
            ||||||||||  || ||  || | ||||| |||| |||||| ||||| |||||||||||
Sbjct: 1483 tcccccttggcctctcgtgttcttttctcagctctttgttgctcttcaagcctgctctt 1425



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 38   acagaatatggactacatcaaatacacaatcacatcctgaac 79
            |||| |||||||||||||| ||||||| ||||| ||||||||
Sbjct: 1871 acagtatatggactacatcgaatacaccatcacttcctgaac 1830



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 118  ataacactacaaaggcacgaaaac 141
            |||| |||||||||||||||||||
Sbjct: 1795 ataatactacaaaggcacgaaaac 1772



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 152/190 (80%), Gaps = 3/190 (1%)
 Strand = Plus / Minus

                                                                           
Query: 244     tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 303
               ||||||||||||||||| ||||| ||  ||||||| || || ||| || |   ||| || 
Sbjct: 9196136 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 9196080

                                                                           
Query: 304     gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 363
               |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| 
Sbjct: 9196079 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 9196020

                                                                           
Query: 364     tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 423
               |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | |
Sbjct: 9196019 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 9195960

                         
Query: 424     tcccccttgg 433
               ||||||||||
Sbjct: 9195959 tcccccttgg 9195950



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                         
Query: 38      acagaatatggactacatcaaatacacaatcacatcctgaac 79
               |||| |||||||||||||| ||||||| ||||| ||||||||
Sbjct: 9196347 acagtatatggactacatcgaatacaccatcacttcctgaac 9196306



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 118     ataacactacaaaggcacgaaaac 141
               |||| |||||||||||||||||||
Sbjct: 9196271 ataatactacaaaggcacgaaaac 9196248



to top

>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032O19, from chromosome 3, complete sequence
          Length = 142248

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 152/190 (80%), Gaps = 3/190 (1%)
 Strand = Plus / Plus

                                                                         
Query: 244   tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 303
             ||||||||||||||||| ||||| ||  ||||||| || || ||| || |   ||| || 
Sbjct: 90255 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 90311

                                                                         
Query: 304   gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 363
             |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| 
Sbjct: 90312 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 90371

                                                                         
Query: 364   tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 423
             |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | |
Sbjct: 90372 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 90431

                       
Query: 424   tcccccttgg 433
             ||||||||||
Sbjct: 90432 tcccccttgg 90441



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 38    acagaatatggactacatcaaatacacaatcacatcctgaac 79
             |||| |||||||||||||| ||||||| ||||| ||||||||
Sbjct: 90044 acagtatatggactacatcgaatacaccatcacttcctgaac 90085



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 118   ataacactacaaaggcacgaaaac 141
             |||| |||||||||||||||||||
Sbjct: 90120 ataatactacaaaggcacgaaaac 90143



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 152/190 (80%), Gaps = 3/190 (1%)
 Strand = Plus / Minus

                                                                           
Query: 244     tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 303
               ||||||||||||||||| ||||| ||  ||||||| || || ||| || |   ||| || 
Sbjct: 9193969 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 9193913

                                                                           
Query: 304     gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 363
               |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| 
Sbjct: 9193912 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 9193853

                                                                           
Query: 364     tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 423
               |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | |
Sbjct: 9193852 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 9193793

                         
Query: 424     tcccccttgg 433
               ||||||||||
Sbjct: 9193792 tcccccttgg 9193783



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                         
Query: 38      acagaatatggactacatcaaatacacaatcacatcctgaac 79
               |||| |||||||||||||| ||||||| ||||| ||||||||
Sbjct: 9194180 acagtatatggactacatcgaatacaccatcacttcctgaac 9194139



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 118     ataacactacaaaggcacgaaaac 141
               |||| |||||||||||||||||||
Sbjct: 9194104 ataatactacaaaggcacgaaaac 9194081



to top

>gb|AY103776.1| Zea mays PCO077793 mRNA sequence
          Length = 1843

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                        
Query: 304  gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 363
            |||| |||||| || ||||||||||| |||||| |||||||||| || || |  ||||||
Sbjct: 1493 gagcggtctatggcagcccggtgctctgtgtatttgccgttgtattcataaatttccagg 1434

                                  
Query: 364  tcgccccacggggtaggggaga 385
            || |||||||| ||||||||||
Sbjct: 1433 tcaccccacggtgtaggggaga 1412



to top

>gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete sequence
          Length = 164461

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   aaaagtggaaagtcatatata 120
             |||||||||||||||||||||
Sbjct: 28931 aaaagtggaaagtcatatata 28951



to top

>emb|AL807373.1|NC21D9 Neurospora crassa DNA linkage group V cosmid contig 21D9
          Length = 55380

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     aatgaatttccaaacttcttt 23
             |||||||||||||||||||||
Sbjct: 27518 aatgaatttccaaacttcttt 27498



to top

>gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR07D23,
              complete sequence
          Length = 176610

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 100    aaaagtggaaagtcatatata 120
              |||||||||||||||||||||
Sbjct: 147680 aaaagtggaaagtcatatata 147660



to top

>gb|AC084652.1|CBRG45O11 Caenorhabditis briggsae cosmid G45O11, complete sequence
          Length = 26703

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 443  ttttcttctcggctcgttgtt 463
            |||||||||||||||||||||
Sbjct: 9515 ttttcttctcggctcgttgtt 9535



to top

>gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR24A22,
              complete sequence
          Length = 183007

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 100    aaaagtggaaagtcatatata 120
              |||||||||||||||||||||
Sbjct: 178824 aaaagtggaaagtcatatata 178844



to top

>gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34 of 83 of the complete
             sequence
          Length = 271507

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   aaaagtggaaagtcatatata 120
             |||||||||||||||||||||
Sbjct: 87881 aaaagtggaaagtcatatata 87861



to top

>ref|XM_478238.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 436 tcccggattttcttctcggc 455
           ||||||||||||||||||||
Sbjct: 287 tcccggattttcttctcggc 306



to top

>ref|XM_362059.1| Magnaporthe grisea 70-15 hypothetical protein (MG04504.4) partial
           cds
          Length = 693

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 447 cttctcggctcgttgttgttcttc 470
           ||||||||||||||||||| ||||
Sbjct: 324 cttctcggctcgttgttgtgcttc 301



to top

>gb|AC149790.1| Pan troglodytes chromosome X clone PTB-089K20, complete sequence
          Length = 47909

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aatttccaaacttctttcta 26
             ||||||||||||||||||||
Sbjct: 38586 aatttccaaacttctttcta 38567



to top

>ref|XM_452372.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C03938g predicted mRNA
          Length = 1782

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  tcaaatacacaatcacatcc 74
           ||||||||||||||||||||
Sbjct: 421 tcaaatacacaatcacatcc 440



to top

>ref|XM_804221.1| Trypanosoma cruzi strain CL Brener protein kinase
           (Tc00.1047053507837.20) partial mRNA
          Length = 1434

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 356 cctccaggtcgccccacggg 375
           ||||||||||||||||||||
Sbjct: 364 cctccaggtcgccccacggg 345



to top

>ref|XM_804530.1| Trypanosoma cruzi strain CL Brener protein kinase
           (Tc00.1047053508405.70) partial mRNA
          Length = 1434

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 356 cctccaggtcgccccacggg 375
           ||||||||||||||||||||
Sbjct: 364 cctccaggtcgccccacggg 345



to top

>emb|AL390037.16| Human DNA sequence from clone RP5-851M4 on chromosome 20 Contains ESTs,
             STSs and GSSs, complete sequence
          Length = 79531

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     atttccaaacttctttctag 27
             ||||||||||||||||||||
Sbjct: 37700 atttccaaacttctttctag 37719



to top

>ref|XM_792977.1| PREDICTED: Strongylocentrotus purpuratus similar to Mitogen-activated
            protein kinase kinase kinase kinase 5 (MAPK/ERK kinase
            kinase kinase 5) (MEK kinase kinase 5) (MEKKK 5)
            (LOC593505), mRNA
          Length = 2643

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 205  cttcagaccctttgaaatcattgg 228
            |||||| |||||||||||||||||
Sbjct: 1240 cttcagcccctttgaaatcattgg 1217



to top

>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tcaaatacacaatcacatcc 74
              ||||||||||||||||||||
Sbjct: 360212 tcaaatacacaatcacatcc 360193



to top

>gb|AC023344.4|AC023344 Homo sapiens BAC clone RP11-395G23 from 8, complete sequence
          Length = 186751

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      aatttccaaacttctttcta 26
              ||||||||||||||||||||
Sbjct: 175148 aatttccaaacttctttcta 175129



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 436      tcccggattttcttctcggc 455
                ||||||||||||||||||||
Sbjct: 18757364 tcccggattttcttctcggc 18757383



to top

>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0055I24
          Length = 155872

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   tcccggattttcttctcggc 455
             ||||||||||||||||||||
Sbjct: 89652 tcccggattttcttctcggc 89671



to top

>emb|AL807248.7| Mouse DNA sequence from clone RP23-400M20 on chromosome X, complete
              sequence
          Length = 190178

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    agaccctttgaaatcattgg 228
              ||||||||||||||||||||
Sbjct: 102734 agaccctttgaaatcattgg 102753



to top

>gb|AC012435.13| Homo sapiens chromosome 15, clone RP11-10O17, complete sequence
          Length = 132994

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    gactacatcaaatacacaat 67
             ||||||||||||||||||||
Sbjct: 46341 gactacatcaaatacacaat 46360



to top

>dbj|AP003353.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1491A8
          Length = 159490

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aatttccaaacttctttcta 26
             ||||||||||||||||||||
Sbjct: 51883 aatttccaaacttctttcta 51864


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,980,266
Number of Sequences: 3902068
Number of extensions: 3980266
Number of successful extensions: 75209
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75041
Number of HSP's gapped (non-prelim): 163
length of query: 491
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 469
effective length of database: 17,147,199,772
effective search space: 8042036693068
effective search space used: 8042036693068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top