Clone Name | rbart49d03 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009302.1| Triticum aestivum clone wlm1.pk0014.e3:fis, full insert mRNA sequence Length = 1264 Score = 597 bits (301), Expect = e-167 Identities = 435/472 (92%), Gaps = 12/472 (2%) Strand = Plus / Minus Query: 24 ctagacttacgacaacagaatatggactacatcaaatacacaatcacatcctgaactgta 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1209 ctagacttacgacaacagaatatggactacatcaaatacacaatcacatcctgaactgta 1150 Query: 84 tgacaccatgaacagaaaaa-gtggaaagtcatatataacactacaaaggcacgaaaacc 142 | ||| |||||| ||||||| ||||||||||||||| | ||||||| |||||||||||| Sbjct: 1149 tcacagcatgaagagaaaaaagtggaaagtcatata--atactacaa-ggcacgaaaacc 1093 Query: 143 gccggtatggatatcagcacaaggcctgaaagcgtttttgatgagaagt--aatatatgg 200 ||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 1092 accggtatggat--cagcacaaggcctgaaagcgttttagatgagaaaataaatatatgg 1035 Query: 201 gtggcttcagaccctttgaaatcattgggaaggcgagtcgccatactgccacgggttgaa 260 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1034 gtggcttcagaccctttcaaatcattgggaaggcgagtcgccatactgccacgggttgaa 975 Query: 261 ctcgatggagctgacgtccgtctcctcggcgacgaccacgctagagctgtctatcgcggc 320 |||||||||||||||||||||||||||||| ||| | ||||||||||||||||| || Sbjct: 974 ctcgatggagctgacgtccgtctcctcggcaacg---gcactagagctgtctatcgcagc 918 Query: 321 ccggtgctcggtgtatctgccgttgtactcgtacacctccaggtcgccccacggggtagg 380 ||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct: 917 ccggtgctcggcgtatctgccattgtactcatacacctccagatcgccccacggggtagg 858 Query: 381 ggagatgtcttccgtcatcttgaaccattttggagtgaacttctcccccttggtgtcccg 440 |||||||||||| ||||| |||||||||||||| || |||| |||||||||||||||||| Sbjct: 857 ggagatgtcttcggtcattttgaaccattttggtgtaaactgctcccccttggtgtcccg 798 Query: 441 gattttcttctcggctcgttgttgttcttc-agcctgctcttatgtgcccca 491 |||||||||||| |||| |||||||||||| ||||||||||| ||||||||| Sbjct: 797 gattttcttctcagctctttgttgttcttcaagcctgctcttgtgtgcccca 746
>dbj|AK119251.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D09, full insert sequence Length = 821 Score = 73.8 bits (37), Expect = 5e-10 Identities = 190/239 (79%), Gaps = 4/239 (1%) Strand = Plus / Minus Query: 244 tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 303 ||||||||||||||||| ||||| || ||||||| || || ||| || | ||| || Sbjct: 583 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 527 Query: 304 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 363 |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| Sbjct: 526 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 467 Query: 364 tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 423 |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | | Sbjct: 466 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 407 Query: 424 tcccccttggtgtcccggattttcttctcggctcgttgttgttcttc-agcctgctctt 481 |||||||||| || || || | ||||| |||| |||||| ||||| ||||||||||| Sbjct: 406 tcccccttggcctctcgtgttcttttctcagctctttgttgctcttcaagcctgctctt 348 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 38 acagaatatggactacatcaaatacacaatcacatcctgaac 79 |||| |||||||||||||| ||||||| ||||| |||||||| Sbjct: 794 acagtatatggactacatcgaatacaccatcacttcctgaac 753 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ataacactacaaaggcacgaaaac 141 |||| ||||||||||||||||||| Sbjct: 718 ataatactacaaaggcacgaaaac 695
>dbj|AK060769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B01, full insert sequence Length = 1898 Score = 73.8 bits (37), Expect = 5e-10 Identities = 190/239 (79%), Gaps = 4/239 (1%) Strand = Plus / Minus Query: 244 tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 303 ||||||||||||||||| ||||| || ||||||| || || ||| || | ||| || Sbjct: 1660 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 1604 Query: 304 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 363 |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| Sbjct: 1603 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 1544 Query: 364 tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 423 |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | | Sbjct: 1543 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 1484 Query: 424 tcccccttggtgtcccggattttcttctcggctcgttgttgttcttc-agcctgctctt 481 |||||||||| || || || | ||||| |||| |||||| ||||| ||||||||||| Sbjct: 1483 tcccccttggcctctcgtgttcttttctcagctctttgttgctcttcaagcctgctctt 1425 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 38 acagaatatggactacatcaaatacacaatcacatcctgaac 79 |||| |||||||||||||| ||||||| ||||| |||||||| Sbjct: 1871 acagtatatggactacatcgaatacaccatcacttcctgaac 1830 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ataacactacaaaggcacgaaaac 141 |||| ||||||||||||||||||| Sbjct: 1795 ataatactacaaaggcacgaaaac 1772
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 2e-09 Identities = 152/190 (80%), Gaps = 3/190 (1%) Strand = Plus / Minus Query: 244 tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 303 ||||||||||||||||| ||||| || ||||||| || || ||| || | ||| || Sbjct: 9196136 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 9196080 Query: 304 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 363 |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| Sbjct: 9196079 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 9196020 Query: 364 tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 423 |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | | Sbjct: 9196019 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 9195960 Query: 424 tcccccttgg 433 |||||||||| Sbjct: 9195959 tcccccttgg 9195950 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 38 acagaatatggactacatcaaatacacaatcacatcctgaac 79 |||| |||||||||||||| ||||||| ||||| |||||||| Sbjct: 9196347 acagtatatggactacatcgaatacaccatcacttcctgaac 9196306 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ataacactacaaaggcacgaaaac 141 |||| ||||||||||||||||||| Sbjct: 9196271 ataatactacaaaggcacgaaaac 9196248
>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032O19, from chromosome 3, complete sequence Length = 142248 Score = 71.9 bits (36), Expect = 2e-09 Identities = 152/190 (80%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 244 tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 303 ||||||||||||||||| ||||| || ||||||| || || ||| || | ||| || Sbjct: 90255 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 90311 Query: 304 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 363 |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| Sbjct: 90312 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 90371 Query: 364 tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 423 |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | | Sbjct: 90372 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 90431 Query: 424 tcccccttgg 433 |||||||||| Sbjct: 90432 tcccccttgg 90441 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 38 acagaatatggactacatcaaatacacaatcacatcctgaac 79 |||| |||||||||||||| ||||||| ||||| |||||||| Sbjct: 90044 acagtatatggactacatcgaatacaccatcacttcctgaac 90085 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ataacactacaaaggcacgaaaac 141 |||| ||||||||||||||||||| Sbjct: 90120 ataatactacaaaggcacgaaaac 90143
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 2e-09 Identities = 152/190 (80%), Gaps = 3/190 (1%) Strand = Plus / Minus Query: 244 tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 303 ||||||||||||||||| ||||| || ||||||| || || ||| || | ||| || Sbjct: 9193969 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 9193913 Query: 304 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 363 |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| Sbjct: 9193912 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 9193853 Query: 364 tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 423 |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | | Sbjct: 9193852 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 9193793 Query: 424 tcccccttgg 433 |||||||||| Sbjct: 9193792 tcccccttgg 9193783 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 38 acagaatatggactacatcaaatacacaatcacatcctgaac 79 |||| |||||||||||||| ||||||| ||||| |||||||| Sbjct: 9194180 acagtatatggactacatcgaatacaccatcacttcctgaac 9194139 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ataacactacaaaggcacgaaaac 141 |||| ||||||||||||||||||| Sbjct: 9194104 ataatactacaaaggcacgaaaac 9194081
>gb|AY103776.1| Zea mays PCO077793 mRNA sequence Length = 1843 Score = 67.9 bits (34), Expect = 3e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 304 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 363 |||| |||||| || ||||||||||| |||||| |||||||||| || || | |||||| Sbjct: 1493 gagcggtctatggcagcccggtgctctgtgtatttgccgttgtattcataaatttccagg 1434 Query: 364 tcgccccacggggtaggggaga 385 || |||||||| |||||||||| Sbjct: 1433 tcaccccacggtgtaggggaga 1412
>gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete sequence Length = 164461 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 aaaagtggaaagtcatatata 120 ||||||||||||||||||||| Sbjct: 28931 aaaagtggaaagtcatatata 28951
>emb|AL807373.1|NC21D9 Neurospora crassa DNA linkage group V cosmid contig 21D9 Length = 55380 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 aatgaatttccaaacttcttt 23 ||||||||||||||||||||| Sbjct: 27518 aatgaatttccaaacttcttt 27498
>gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR07D23, complete sequence Length = 176610 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 aaaagtggaaagtcatatata 120 ||||||||||||||||||||| Sbjct: 147680 aaaagtggaaagtcatatata 147660
>gb|AC084652.1|CBRG45O11 Caenorhabditis briggsae cosmid G45O11, complete sequence Length = 26703 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 ttttcttctcggctcgttgtt 463 ||||||||||||||||||||| Sbjct: 9515 ttttcttctcggctcgttgtt 9535
>gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR24A22, complete sequence Length = 183007 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 aaaagtggaaagtcatatata 120 ||||||||||||||||||||| Sbjct: 178824 aaaagtggaaagtcatatata 178844
>gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34 of 83 of the complete sequence Length = 271507 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 aaaagtggaaagtcatatata 120 ||||||||||||||||||||| Sbjct: 87881 aaaagtggaaagtcatatata 87861
>ref|XM_478238.1| Oryza sativa (japonica cultivar-group), mRNA Length = 414 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 tcccggattttcttctcggc 455 |||||||||||||||||||| Sbjct: 287 tcccggattttcttctcggc 306
>ref|XM_362059.1| Magnaporthe grisea 70-15 hypothetical protein (MG04504.4) partial cds Length = 693 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 447 cttctcggctcgttgttgttcttc 470 ||||||||||||||||||| |||| Sbjct: 324 cttctcggctcgttgttgtgcttc 301
>gb|AC149790.1| Pan troglodytes chromosome X clone PTB-089K20, complete sequence Length = 47909 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aatttccaaacttctttcta 26 |||||||||||||||||||| Sbjct: 38586 aatttccaaacttctttcta 38567
>ref|XM_452372.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C03938g predicted mRNA Length = 1782 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tcaaatacacaatcacatcc 74 |||||||||||||||||||| Sbjct: 421 tcaaatacacaatcacatcc 440
>ref|XM_804221.1| Trypanosoma cruzi strain CL Brener protein kinase (Tc00.1047053507837.20) partial mRNA Length = 1434 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 cctccaggtcgccccacggg 375 |||||||||||||||||||| Sbjct: 364 cctccaggtcgccccacggg 345
>ref|XM_804530.1| Trypanosoma cruzi strain CL Brener protein kinase (Tc00.1047053508405.70) partial mRNA Length = 1434 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 cctccaggtcgccccacggg 375 |||||||||||||||||||| Sbjct: 364 cctccaggtcgccccacggg 345
>emb|AL390037.16| Human DNA sequence from clone RP5-851M4 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 79531 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 atttccaaacttctttctag 27 |||||||||||||||||||| Sbjct: 37700 atttccaaacttctttctag 37719
>ref|XM_792977.1| PREDICTED: Strongylocentrotus purpuratus similar to Mitogen-activated protein kinase kinase kinase kinase 5 (MAPK/ERK kinase kinase kinase 5) (MEK kinase kinase 5) (MEKKK 5) (LOC593505), mRNA Length = 2643 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 205 cttcagaccctttgaaatcattgg 228 |||||| ||||||||||||||||| Sbjct: 1240 cttcagcccctttgaaatcattgg 1217
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1753957 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tcaaatacacaatcacatcc 74 |||||||||||||||||||| Sbjct: 360212 tcaaatacacaatcacatcc 360193
>gb|AC023344.4|AC023344 Homo sapiens BAC clone RP11-395G23 from 8, complete sequence Length = 186751 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aatttccaaacttctttcta 26 |||||||||||||||||||| Sbjct: 175148 aatttccaaacttctttcta 175129
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 tcccggattttcttctcggc 455 |||||||||||||||||||| Sbjct: 18757364 tcccggattttcttctcggc 18757383
>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0055I24 Length = 155872 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 tcccggattttcttctcggc 455 |||||||||||||||||||| Sbjct: 89652 tcccggattttcttctcggc 89671
>emb|AL807248.7| Mouse DNA sequence from clone RP23-400M20 on chromosome X, complete sequence Length = 190178 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 agaccctttgaaatcattgg 228 |||||||||||||||||||| Sbjct: 102734 agaccctttgaaatcattgg 102753
>gb|AC012435.13| Homo sapiens chromosome 15, clone RP11-10O17, complete sequence Length = 132994 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 gactacatcaaatacacaat 67 |||||||||||||||||||| Sbjct: 46341 gactacatcaaatacacaat 46360
>dbj|AP003353.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1491A8 Length = 159490 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aatttccaaacttctttcta 26 |||||||||||||||||||| Sbjct: 51883 aatttccaaacttctttcta 51864 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,980,266 Number of Sequences: 3902068 Number of extensions: 3980266 Number of successful extensions: 75209 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75041 Number of HSP's gapped (non-prelim): 163 length of query: 491 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 469 effective length of database: 17,147,199,772 effective search space: 8042036693068 effective search space used: 8042036693068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)