ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p... 37 0.028
2GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: ... 34 0.18
3GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-... 33 0.24
4GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-... 33 0.24
5POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 33 0.40
6GIS2_YEAST (P53849) Zinc-finger protein GIS2 33 0.40
7GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; C... 33 0.40
8GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (M... 32 0.68
9GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b) 32 0.68
10ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5 32 0.89
11CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (... 32 0.89
12CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP)... 32 0.89
13CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP)... 32 0.89
14COAT_FMVD (P09519) Probable coat protein 32 0.89
15GRP2_NICSY (P27484) Glycine-rich protein 2 32 0.89
16CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP)... 32 0.89
17COAT_SOCMV (P15627) Coat protein 32 0.89
18CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP)... 30 2.0
19GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (... 30 2.0
20ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9 30 2.6
21LARK_DROME (Q94901) RNA-binding protein lark 30 2.6
22ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9 30 2.6
23GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein... 30 3.4
24GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein... 30 3.4
25GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein... 30 3.4
26ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11 29 4.4
27RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro... 29 4.4
28RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro... 29 5.8
29RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro... 29 5.8
30RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p... 29 5.8
31RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro... 29 5.8
32RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p... 29 5.8
33ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7 29 5.8
34RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro... 29 5.8
35RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro... 29 5.8
36GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains:... 29 5.8
37GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains:... 29 5.8
38GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains:... 29 5.8
39COAT_CERV (P05399) Probable coat protein 28 7.6
40GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15... 28 7.6
41GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15... 28 7.6
42GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15... 28 7.6
43GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (... 28 7.6
44COAT_CAMVN (Q00956) Coat protein 28 7.6
45COAT_CAMVC (P03543) Coat protein 28 7.6
46COAT_CAMVS (P03542) Coat protein 28 7.6
47COAT_CAMVD (P03544) Coat protein 28 7.6
48YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 28 9.9 
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)|
          Length = 271

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKA 280
           CF C E GH SRECPN+A
Sbjct: 45  CFRCGEEGHMSRECPNEA 62



 Score = 35.4 bits (80), Expect = 0.062
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKA 280
           CF C E+GH SR+CPN A
Sbjct: 72  CFRCGEAGHMSRDCPNSA 89



 Score = 33.5 bits (75), Expect = 0.24
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPN 286
           C+ C ESGH SRECP+
Sbjct: 198 CYKCGESGHMSRECPS 213



 Score = 32.0 bits (71), Expect = 0.68
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPN 286
           C+ C ++GH SR+CPN
Sbjct: 170 CYKCGDAGHISRDCPN 185



 Score = 32.0 bits (71), Expect = 0.68
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPN 286
           C+ C ++GH SR+CPN
Sbjct: 142 CYKCGDAGHISRDCPN 157



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPN 286
           C+ C E+GH SR+CP+
Sbjct: 255 CYKCGEAGHISRDCPS 270



 Score = 29.6 bits (65), Expect = 3.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           C+ C + GH SRECP
Sbjct: 224 CYKCGKPGHISRECP 238



 Score = 29.6 bits (65), Expect = 3.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPN 286
           C+ C + GH SR+CP+
Sbjct: 99  CYKCGQEGHLSRDCPS 114



 Score = 28.1 bits (61), Expect = 9.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           C +C + GH++RECP
Sbjct: 18  CRNCGKEGHYARECP 32
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>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp24; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 656

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKAH*AAQP-VRSECP 244
           CF C + GHF++ C   AH  A+P V   CP
Sbjct: 548 CFKCGKKGHFAKNCHEHAHNNAEPKVPGLCP 578
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>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline|
           helicase 2)
          Length = 974

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKA 280
           CF+C E GH S ECPN A
Sbjct: 475 CFNCGEQGHRSNECPNPA 492



 Score = 28.5 bits (62), Expect = 7.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           C++C + GH SR+CP +
Sbjct: 398 CYNCQQPGHNSRDCPEE 414



 Score = 28.5 bits (62), Expect = 7.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           C++C + GH SR+CP +
Sbjct: 284 CYNCQQPGHNSRDCPEE 300
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>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline|
           helicase 1)
          Length = 763

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKA 280
           CF+C E GH S ECPN A
Sbjct: 264 CFNCGEQGHRSNECPNPA 281
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>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT|
           1-94 [Includes: Protease (EC 3.4.23.-); Reverse
           transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 32.7 bits (73), Expect = 0.40
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPN 286
           C++C++ GHF R+CPN
Sbjct: 232 CYNCNQPGHFKRDCPN 247
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>GIS2_YEAST (P53849) Zinc-finger protein GIS2|
          Length = 153

 Score = 32.7 bits (73), Expect = 0.40
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           CF+C+++GH SRECP
Sbjct: 67  CFNCNQTGHISRECP 81



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           C++C+E+GH S++CP
Sbjct: 137 CYNCNETGHISKDCP 151



 Score = 29.3 bits (64), Expect = 4.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPN 286
           C++C ++GH SR+C N
Sbjct: 118 CYTCGQAGHMSRDCQN 133
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>GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 519

 Score = 32.7 bits (73), Expect = 0.40
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKAH 277
           C  C E GH++RECP K H
Sbjct: 490 CAYCKEKGHWARECPRKKH 508
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>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKAH*AAQPVRSECPL 241
           C+ C + GH++R+CP K   A  P    CP+
Sbjct: 346 CYRCLKEGHWARDCPTK---ATGPPPGPCPI 373
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>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)|
          Length = 201

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -3

Query: 333 CFSCSESGHFSREC 292
           C+SC ESGHF+R+C
Sbjct: 182 CYSCGESGHFARDC 195



 Score = 28.5 bits (62), Expect = 7.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 333 CFSCSESGHFSREC 292
           CF C E GH +REC
Sbjct: 138 CFKCGEPGHMAREC 151
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>ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5|
          Length = 475

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKAH*AAQ 265
           C  C   GHF+R+CP K H A Q
Sbjct: 445 CLYCGYPGHFARDCPVKPHQALQ 467
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>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           CF C  SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 29.3 bits (64), Expect = 4.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKA 280
           C+ C ESGH +REC  +A
Sbjct: 158 CYRCGESGHLARECTIEA 175
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>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           CF C  SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 29.3 bits (64), Expect = 4.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKA 280
           C+ C ESGH +REC  +A
Sbjct: 158 CYRCGESGHLARECTIEA 175
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>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           CF C  SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 29.3 bits (64), Expect = 4.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKA 280
           C+ C ESGH +REC  +A
Sbjct: 158 CYRCGESGHLARECTIEA 175
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>COAT_FMVD (P09519) Probable coat protein|
          Length = 489

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           C+ C+E GH++ ECPN+
Sbjct: 411 CWICTEEGHYANECPNR 427
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>GRP2_NICSY (P27484) Glycine-rich protein 2|
          Length = 214

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 333 CFSCSESGHFSREC 292
           CF C ESGHF+R+C
Sbjct: 159 CFKCGESGHFARDC 172



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 333 CFSCSESGHFSREC 292
           C+ C E GHF+REC
Sbjct: 196 CYKCGEDGHFAREC 209
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>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 178

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           CF C  SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 29.3 bits (64), Expect = 4.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKA 280
           C+ C ESGH +REC  +A
Sbjct: 159 CYRCGESGHLARECTIEA 176
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>COAT_SOCMV (P15627) Coat protein|
          Length = 441

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKAH*AAQPVR 256
           C+ C E GH++ ECP K +  AQ ++
Sbjct: 383 CWLCHEEGHYANECPKKDNKKAQTLK 408
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>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 172

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           CF C  +GH++RECP
Sbjct: 6   CFKCGRTGHWARECP 20



 Score = 29.3 bits (64), Expect = 4.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKA 280
           C+ C ESGH +REC  +A
Sbjct: 153 CYRCGESGHLARECTIEA 170
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>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKAH*AAQPVRSECPL 241
           C+ C + GH++R+CP K      P    CP+
Sbjct: 346 CYRCLKEGHWARDCPTK---TTGPPPGPCPI 373
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>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9|
          Length = 273

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPN 286
           CF C E GH SR CP+
Sbjct: 186 CFVCGEMGHLSRSCPD 201
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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           C+ C  SGH+S+ECP
Sbjct: 170 CYRCGRSGHWSKECP 184
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>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9|
          Length = 271

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPN 286
           CF C E GH SR CP+
Sbjct: 186 CFVCGEMGHLSRSCPD 201
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>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 428

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKAH*AAQPVRSECPL 241
           CF C ++GH+SR+C        +P    CPL
Sbjct: 356 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 381
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>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKAH*AAQPVRSECPL 241
           CF C ++GH+SR+C        +P    CPL
Sbjct: 357 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 382
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>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKAH*AAQPVRSECPL 241
           CF C ++GH+SR+C        +P    CPL
Sbjct: 357 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 382
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>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11|
          Length = 1644

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 8/35 (22%)
 Frame = -3

Query: 333  CFSCSESGHFSRECP--------NKAH*AAQPVRS 253
            CF C ++GH  RECP        N +  AAQ VR+
Sbjct: 1359 CFICGDAGHVRRECPEVKLARQRNSSVAAAQLVRN 1393
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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           C+ C + GH+S+ECP
Sbjct: 162 CYRCGQEGHWSKECP 176
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>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           C+ C + GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           C+ C + GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           C+ C + GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           C+ C + GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           C+ C + GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7|
          Length = 542

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           C+ C++ GH+  ECP +
Sbjct: 349 CYHCAQKGHYGHECPER 365
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>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           C+ C + GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 CFSCSESGHFSRECP 289
           C+ C + GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           C  C E GH++R+CP K
Sbjct: 503 CAYCKEKGHWARDCPKK 519
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>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           C  C E GH++R+CP K
Sbjct: 503 CAYCKEKGHWARDCPKK 519
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>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 538

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           C  C E GH++R+CP K
Sbjct: 504 CAYCKEKGHWARDCPKK 520
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>COAT_CERV (P05399) Probable coat protein|
          Length = 494

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           C+ C+  GH++ ECPN+
Sbjct: 420 CWVCNIEGHYANECPNR 436
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>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 333 CFSCSESGHFSREC 292
           CF C + GHFS++C
Sbjct: 402 CFKCKQPGHFSKQC 415
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>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 333 CFSCSESGHFSREC 292
           CF C + GHFS++C
Sbjct: 402 CFKCKQPGHFSKQC 415
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>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 333 CFSCSESGHFSREC 292
           CF C + GHFS++C
Sbjct: 402 CFKCKQPGHFSKQC 415
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>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core|
           protein p24; Core protein p12 (p15)]
          Length = 432

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNKAH*AAQPVRSECPL 241
           CF C + GH+SR+C        +P    CPL
Sbjct: 362 CFRCGKVGHWSRDCTQ-----PRPPPGPCPL 387
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>COAT_CAMVN (Q00956) Coat protein|
          Length = 488

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           C+ C+  GH++ ECPN+
Sbjct: 412 CWICNIEGHYANECPNR 428
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>COAT_CAMVC (P03543) Coat protein|
          Length = 488

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           C+ C+  GH++ ECPN+
Sbjct: 412 CWICNIEGHYANECPNR 428
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>COAT_CAMVS (P03542) Coat protein|
          Length = 489

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           C+ C+  GH++ ECPN+
Sbjct: 414 CWICNIEGHYANECPNR 430
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>COAT_CAMVD (P03544) Coat protein|
          Length = 490

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           C+ C+  GH++ ECPN+
Sbjct: 413 CWICNIEGHYANECPNR 429
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>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III|
          Length = 2186

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 333 CFSCSESGHFSRECPNK 283
           CF C+E GH +  CP K
Sbjct: 591 CFRCNEMGHIAWNCPKK 607


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,111,040
Number of Sequences: 219361
Number of extensions: 535160
Number of successful extensions: 1457
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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