ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF528524.1| Triticum aestivum putative glutamate decarboxylas... 70 5e-09
2emb|AL035451.6|HS145B8 Human DNA sequence from clone RP6-145B8 o... 42 1.0
3ref|NM_104543.2| Arabidopsis thaliana carboxylic ester hydrolase... 40 4.1
4gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.1
5gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 4.1
6gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.1
7ref|XM_715656.1| Candida albicans SC5314 hypothetical protein (C... 40 4.1
8ref|XM_715529.1| Candida albicans SC5314 hypothetical protein (C... 40 4.1
9emb|AL391417.7| Human DNA sequence from clone RP11-15J23 on chro... 40 4.1
10emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chr... 40 4.1
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
12emb|BX813398.1|CNS0AC29 Arabidopsis thaliana Full-length cDNA Co... 40 4.1
13emb|BX841928.1|CNS09Y4F Arabidopsis thaliana Full-length cDNA Co... 40 4.1
14gb|AC009323.4|AC009323 Arabidopsis thaliana chromosome I BAC F25... 40 4.1
15gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 4.1
16gb|AC145911.4| Gallus gallus BAC clone CH261-47H12 from chromoso... 40 4.1

>gb|AF528524.1| Triticum aestivum putative glutamate decarboxylase 1 mRNA, partial
           cds
          Length = 383

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 278 gcagacgccctgggtcttcttcctggcggcgacgg 312
           |||||||||||||||||||||||||||||||||||
Sbjct: 383 gcagacgccctgggtcttcttcctggcggcgacgg 349



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>emb|AL035451.6|HS145B8 Human DNA sequence from clone RP6-145B8 on chromosome Xq21.2-22.3
             Contains a thiopurine S-methyltransferase (TPMT)
             pseudogene, a stress-induced-phosphoprotein 1 (STIP1)
             pseudogene, a NADH dehydrogenase (ubiquinone) 1 alpha
             subcomplex (NDUFA5) pseudogene and the 5' end of the CHM
             gene for choroideremia (Rab escort protein 1), complete
             sequence
          Length = 115039

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   caagagaagcatagcataaaa 216
             |||||||||||||||||||||
Sbjct: 33987 caagagaagcatagcataaaa 34007



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>ref|NM_104543.2| Arabidopsis thaliana carboxylic ester hydrolase/ hydrolase, acting
           on ester bonds AT1G56670 mRNA, complete cds
          Length = 1207

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 aaattattacggaaataaaa 233
           ||||||||||||||||||||
Sbjct: 596 aaattattacggaaataaaa 615



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>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01,
              complete sequence
          Length = 173074

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 189    tcacggacaagagaagcatagcat 212
              |||||||||||||||||| |||||
Sbjct: 167846 tcacggacaagagaagcaaagcat 167823



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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 179     ttaaaaaccgtcacggacaa 198
               ||||||||||||||||||||
Sbjct: 1847240 ttaaaaaccgtcacggacaa 1847259



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>gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0092E21, complete sequence
          Length = 132649

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 189   tcacggacaagagaagcatagcat 212
             |||||||||||||||||| |||||
Sbjct: 39580 tcacggacaagagaagcaaagcat 39557



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>ref|XM_715656.1| Candida albicans SC5314 hypothetical protein (CaO19_11790), mRNA
          Length = 2289

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 ataaaattattacggaaata 230
           ||||||||||||||||||||
Sbjct: 595 ataaaattattacggaaata 614



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>ref|XM_715529.1| Candida albicans SC5314 hypothetical protein (CaO19_4315), mRNA
          Length = 2283

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 ataaaattattacggaaata 230
           ||||||||||||||||||||
Sbjct: 586 ataaaattattacggaaata 605



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>emb|AL391417.7| Human DNA sequence from clone RP11-15J23 on chromosome 6 Contains a
            novel pseudogene, complete sequence
          Length = 91355

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 197  aagagaagcatagcataaaa 216
            ||||||||||||||||||||
Sbjct: 6130 aagagaagcatagcataaaa 6111



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>emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chromosome 6q21-22.2 Contains
              2 putative novel genes, complete sequence
          Length = 141924

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     acacagaactgctgctaggt 64
              ||||||||||||||||||||
Sbjct: 137787 acacagaactgctgctaggt 137806



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 189      tcacggacaagagaagcatagcat 212
                |||||||||||||||||| |||||
Sbjct: 20496101 tcacggacaagagaagcaaagcat 20496078



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>emb|BX813398.1|CNS0AC29 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB15ZC05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1207

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 aaattattacggaaataaaa 233
           ||||||||||||||||||||
Sbjct: 596 aaattattacggaaataaaa 615



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>emb|BX841928.1|CNS09Y4F Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL47ZA02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1146

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 aaattattacggaaataaaa 233
           ||||||||||||||||||||
Sbjct: 596 aaattattacggaaataaaa 615



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>gb|AC009323.4|AC009323 Arabidopsis thaliana chromosome I BAC F25P12 genomic sequence, complete
             sequence
          Length = 141748

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   aaattattacggaaataaaa 233
             ||||||||||||||||||||
Sbjct: 74065 aaattattacggaaataaaa 74046



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     aaattattacggaaataaaa 233
               ||||||||||||||||||||
Sbjct: 1279630 aaattattacggaaataaaa 1279611



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>gb|AC145911.4| Gallus gallus BAC clone CH261-47H12 from chromosome unknown, complete
             sequence
          Length = 210020

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    gggaacccaaataaacacag 50
             ||||||||||||||||||||
Sbjct: 40348 gggaacccaaataaacacag 40367


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,967,836
Number of Sequences: 3902068
Number of extensions: 2967836
Number of successful extensions: 57660
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57619
Number of HSP's gapped (non-prelim): 41
length of query: 312
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 290
effective length of database: 17,147,199,772
effective search space: 4972687933880
effective search space used: 4972687933880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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