Clone Name | rbart49c08 |
---|---|
Clone Library Name | barley_pub |
>gb|AF528524.1| Triticum aestivum putative glutamate decarboxylase 1 mRNA, partial cds Length = 383 Score = 69.9 bits (35), Expect = 5e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 278 gcagacgccctgggtcttcttcctggcggcgacgg 312 ||||||||||||||||||||||||||||||||||| Sbjct: 383 gcagacgccctgggtcttcttcctggcggcgacgg 349
>emb|AL035451.6|HS145B8 Human DNA sequence from clone RP6-145B8 on chromosome Xq21.2-22.3 Contains a thiopurine S-methyltransferase (TPMT) pseudogene, a stress-induced-phosphoprotein 1 (STIP1) pseudogene, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex (NDUFA5) pseudogene and the 5' end of the CHM gene for choroideremia (Rab escort protein 1), complete sequence Length = 115039 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 caagagaagcatagcataaaa 216 ||||||||||||||||||||| Sbjct: 33987 caagagaagcatagcataaaa 34007
>ref|NM_104543.2| Arabidopsis thaliana carboxylic ester hydrolase/ hydrolase, acting on ester bonds AT1G56670 mRNA, complete cds Length = 1207 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aaattattacggaaataaaa 233 |||||||||||||||||||| Sbjct: 596 aaattattacggaaataaaa 615
>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01, complete sequence Length = 173074 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tcacggacaagagaagcatagcat 212 |||||||||||||||||| ||||| Sbjct: 167846 tcacggacaagagaagcaaagcat 167823
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 ttaaaaaccgtcacggacaa 198 |||||||||||||||||||| Sbjct: 1847240 ttaaaaaccgtcacggacaa 1847259
>gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092E21, complete sequence Length = 132649 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tcacggacaagagaagcatagcat 212 |||||||||||||||||| ||||| Sbjct: 39580 tcacggacaagagaagcaaagcat 39557
>ref|XM_715656.1| Candida albicans SC5314 hypothetical protein (CaO19_11790), mRNA Length = 2289 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 ataaaattattacggaaata 230 |||||||||||||||||||| Sbjct: 595 ataaaattattacggaaata 614
>ref|XM_715529.1| Candida albicans SC5314 hypothetical protein (CaO19_4315), mRNA Length = 2283 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 ataaaattattacggaaata 230 |||||||||||||||||||| Sbjct: 586 ataaaattattacggaaata 605
>emb|AL391417.7| Human DNA sequence from clone RP11-15J23 on chromosome 6 Contains a novel pseudogene, complete sequence Length = 91355 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 aagagaagcatagcataaaa 216 |||||||||||||||||||| Sbjct: 6130 aagagaagcatagcataaaa 6111
>emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chromosome 6q21-22.2 Contains 2 putative novel genes, complete sequence Length = 141924 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 acacagaactgctgctaggt 64 |||||||||||||||||||| Sbjct: 137787 acacagaactgctgctaggt 137806
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tcacggacaagagaagcatagcat 212 |||||||||||||||||| ||||| Sbjct: 20496101 tcacggacaagagaagcaaagcat 20496078
>emb|BX813398.1|CNS0AC29 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB15ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1207 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aaattattacggaaataaaa 233 |||||||||||||||||||| Sbjct: 596 aaattattacggaaataaaa 615
>emb|BX841928.1|CNS09Y4F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL47ZA02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1146 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aaattattacggaaataaaa 233 |||||||||||||||||||| Sbjct: 596 aaattattacggaaataaaa 615
>gb|AC009323.4|AC009323 Arabidopsis thaliana chromosome I BAC F25P12 genomic sequence, complete sequence Length = 141748 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 aaattattacggaaataaaa 233 |||||||||||||||||||| Sbjct: 74065 aaattattacggaaataaaa 74046
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 aaattattacggaaataaaa 233 |||||||||||||||||||| Sbjct: 1279630 aaattattacggaaataaaa 1279611
>gb|AC145911.4| Gallus gallus BAC clone CH261-47H12 from chromosome unknown, complete sequence Length = 210020 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 gggaacccaaataaacacag 50 |||||||||||||||||||| Sbjct: 40348 gggaacccaaataaacacag 40367 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,967,836 Number of Sequences: 3902068 Number of extensions: 2967836 Number of successful extensions: 57660 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57619 Number of HSP's gapped (non-prelim): 41 length of query: 312 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 290 effective length of database: 17,147,199,772 effective search space: 4972687933880 effective search space used: 4972687933880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)