>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory particle non-ATPase subunit 7)
           (OsRPN7)
          Length = 389

 Score =  143 bits (360), Expect = 3e-34
 Identities = 73/77 (94%), Positives = 75/77 (97%)
 Frame = -3

Query: 508 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 329
           SVTMEAMA+AFGVTVDFID ELSRFIAAGKLHCKIDKVA VLETNRPDARNAFYQ+TIKQ
Sbjct: 313 SVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQATIKQ 372

Query: 328 GDFLLNRIQKLSRVIDL 278
           GDFLLNRIQKLSRVIDL
Sbjct: 373 GDFLLNRIQKLSRVIDL 389

>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6|
          Length = 387

 Score =  142 bits (357), Expect = 7e-34
 Identities = 71/77 (92%), Positives = 75/77 (97%)
 Frame = -3

Query: 508 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 329
           SVT+EAMA AFGV+VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDA+NA YQ+TIKQ
Sbjct: 311 SVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQ 370

Query: 328 GDFLLNRIQKLSRVIDL 278
           GDFLLNRIQKLSRVIDL
Sbjct: 371 GDFLLNRIQKLSRVIDL 387

>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit S10) (p42A)
          Length = 389

 Score =  114 bits (286), Expect = 1e-25
 Identities = 56/77 (72%), Positives = 67/77 (87%)
 Frame = -3

Query: 508 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 329
           S+T+  MA AFGV VDFIDQELSRFIAAG+LHCKIDKV  ++ETNRPD++N  YQ TIK+
Sbjct: 313 SLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKK 372

Query: 328 GDFLLNRIQKLSRVIDL 278
           GD LLNR+QKLSRVI++
Sbjct: 373 GDLLLNRVQKLSRVINM 389

>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit S10) (Rpn7 protein)
          Length = 389

 Score =  114 bits (284), Expect = 2e-25
 Identities = 53/77 (68%), Positives = 69/77 (89%)
 Frame = -3

Query: 508 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 329
           S+T++ MA +FGVTV++IDQEL+RFIAAG+LH K+D+V G++ETNRPD +N  YQ+TIKQ
Sbjct: 313 SLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNRPDNKNWQYQATIKQ 372

Query: 328 GDFLLNRIQKLSRVIDL 278
           GD LLNRIQKLSRVI++
Sbjct: 373 GDLLLNRIQKLSRVINI 389

>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit S10) (p42A) (Proteasome
           regulatory particle subunit p44S10) (Phosphonoformate
           immuno-associated protein 4) (Breast cancer-associated
           protein SGA-113M)
          Length = 389

 Score =  113 bits (282), Expect = 3e-25
 Identities = 55/77 (71%), Positives = 67/77 (87%)
 Frame = -3

Query: 508 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 329
           S+T+  MA AFGV V+FIDQELSRFIAAG+LHCKIDKV  ++ETNRPD++N  YQ TIK+
Sbjct: 313 SLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKK 372

Query: 328 GDFLLNRIQKLSRVIDL 278
           GD LLNR+QKLSRVI++
Sbjct: 373 GDLLLNRVQKLSRVINM 389

>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7|
          Length = 409

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 41/82 (50%), Positives = 61/82 (74%)
 Frame = -3

Query: 508 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 329
           ++++++MAA+FGV+VD+ID++L+ FI   KL+C ID+V GV+ TNRPD +N  YQ  +KQ
Sbjct: 328 ALSIDSMAASFGVSVDYIDRDLASFIPDNKLNCVIDRVNGVVFTNRPDEKNRQYQEVVKQ 387

Query: 328 GDFLLNRIQKLSRVIDL*AFFV 263
           GD LLN++QK    +   AF V
Sbjct: 388 GDVLLNKLQKYQATVMRGAFKV 409

>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit rpn-7)
          Length = 410

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 42/76 (55%), Positives = 56/76 (73%)
 Frame = -3

Query: 508 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 329
           +V ++ MA  FGV+  FID+EL R IA G+L C+ID V GV+E N  D++N  Y++ IK 
Sbjct: 334 TVRIDMMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHLYKAVIKD 393

Query: 328 GDFLLNRIQKLSRVID 281
           GD LLNRIQKL+RVI+
Sbjct: 394 GDILLNRIQKLARVIN 409

>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7|
          Length = 429

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 36/77 (46%), Positives = 57/77 (74%)
 Frame = -3

Query: 508 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 329
           ++++++MA+AFGV+V F+D +L +FI   +L+C ID+V G++ETNRPD +NA Y   +KQ
Sbjct: 347 TLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQ 406

Query: 328 GDFLLNRIQKLSRVIDL 278
           GD LL ++QK    + L
Sbjct: 407 GDGLLTKLQKYGAAVRL 423

>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (GPS1 protein)
          Length = 471

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = -3

Query: 508 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 329
           S  M  MAAAF  TV  ++ EL++ I  G ++ +ID  + +L     D R+  ++ ++  
Sbjct: 363 SADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLM 422

Query: 328 G 326
           G
Sbjct: 423 G 423

>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (MFH protein)
          Length = 471

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = -3

Query: 508 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 329
           S  M  MAAAF  TV  ++ EL++ I  G ++ +ID  + +L     D R+  ++ ++  
Sbjct: 363 SADMHKMAAAFNTTVAALEDELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSLLM 422

Query: 328 G 326
           G
Sbjct: 423 G 423

>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)|
           (Constitutive photomorphogenesis protein 11) (FUSCA
           protein 6) (FUSCA6)
          Length = 441

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -3

Query: 508 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 329
           SV +  MA AF  +V  +++EL   I   ++  +ID    +L     D RNA +Q  ++ 
Sbjct: 352 SVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQM 411

Query: 328 GD 323
           G+
Sbjct: 412 GN 413

>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S|
           proteasome regulatory subunit p55)
          Length = 455

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 19/74 (25%), Positives = 38/74 (51%)
 Frame = -3

Query: 505 VTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 326
           +TM+ MA    ++VD  +  LS  +    +  K+D++AGV+   RP   N       ++ 
Sbjct: 372 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKL 431

Query: 325 DFLLNRIQKLSRVI 284
           + L++ + K + +I
Sbjct: 432 NSLMSLVNKTTHLI 445

>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S|
           proteasome regulatory subunit p55)
          Length = 455

 Score = 36.2 bits (82), Expect = 0.053
 Identities = 18/74 (24%), Positives = 38/74 (51%)
 Frame = -3

Query: 505 VTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 326
           +TM+ MA    ++VD  +  LS  +    +  K+D++AG++   RP   N       ++ 
Sbjct: 372 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKL 431

Query: 325 DFLLNRIQKLSRVI 284
           + L++ + K + +I
Sbjct: 432 NSLMSLVNKTTHLI 445

>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S|
           proteasome regulatory subunit p55)
          Length = 455

 Score = 36.2 bits (82), Expect = 0.053
 Identities = 18/74 (24%), Positives = 38/74 (51%)
 Frame = -3

Query: 505 VTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 326
           +TM+ MA    ++VD  +  LS  +    +  K+D++AG++   RP   N       ++ 
Sbjct: 372 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKL 431

Query: 325 DFLLNRIQKLSRVI 284
           + L++ + K + +I
Sbjct: 432 NSLMSLVNKTTHLI 445

>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit|
           1b) (Dch1-2)
          Length = 525

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -3

Query: 508 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 329
           S  M  MA AF  +V  ++ E+ + I  G++  +ID    +L     D RN+ ++  +  
Sbjct: 412 SADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERALIM 471

Query: 328 G 326
           G
Sbjct: 472 G 472

>CRT_CLOAB (P52046) 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) (Crotonase)|
          Length = 261

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -3

Query: 409 KIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVI 284
           K  KVA V+  NRP A NA    T+K+ D+++  I+  S V+
Sbjct: 10  KEGKVA-VVTINRPKALNALNSDTLKEMDYVIGEIENDSEVL 50

>TRME_PHOLL (Q7MAX1) tRNA modification GTPase trmE|
          Length = 454

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -3

Query: 466 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 326
           +DF D+E+  F++ GK+  K+D+V   LE  R  AR     S +++G
Sbjct: 174 IDFPDEEID-FLSDGKIEAKLDEVIVELERVRSQARQG---SLLREG 216

>DHC24_HUMAN (Q15392) 24-dehydrocholesterol reductase precursor (EC 1.3.1.-)|
           (3-beta-hydroxysterol delta-24-reductase) (Seladin-1)
           (Diminuto/dwarf1 homolog)
          Length = 516

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 259 FGAAPWHNPTLPKLPLQDFALVPAEYWQYCTLRFKSIKGKE 137
           F A PW   TL  L   +  ++PA+  +Y  LRF+ ++G E
Sbjct: 211 FYAVPWSCGTLGFLVAAEIRIIPAK--KYVKLRFEPVRGLE 249


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,527,419
Number of Sequences: 219361
Number of extensions: 1558029
Number of successful extensions: 3748
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3746
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)