ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
2dbj|AK104327.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 6e-65
3dbj|AK068887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 6e-65
4dbj|AB037149.1| Oryza sativa (japonica cultivar-group) OsRPN7 mR... 256 6e-65
5ref|XM_472939.1| Oryza sativa (japonica cultivar-group), predic... 254 2e-64
6gb|AY107400.1| Zea mays PCO125916 mRNA sequence 224 2e-55
7gb|BT016822.1| Zea mays clone Contig655 mRNA sequence 220 3e-54
8gb|AY104803.1| Zea mays PCO064157 mRNA sequence 220 3e-54
9emb|AL442114.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 190 3e-45
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
11dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
12dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
13emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4,... 182 7e-43
14emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4,... 182 7e-43
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 182 7e-43
16ref|NM_118615.2| Arabidopsis thaliana unknown protein AT4G24820 ... 123 6e-25
17ref|NM_202882.1| Arabidopsis thaliana unknown protein AT4G24820 ... 123 6e-25
18gb|AY230838.1| Arabidopsis thaliana 26S proteasome subunit RPN7 ... 123 6e-25
19gb|BT011969.1| Arabidopsis thaliana At4g24820 mRNA sequence 123 6e-25
20gb|BT000653.1| Arabidopsis thaliana clone RAFL05-08-I15 (R09884)... 123 6e-25
21gb|AY093269.1| Arabidopsis thaliana putative proteasome regulato... 123 6e-25
22gb|AY054500.1| Arabidopsis thaliana putative proteasome regulato... 123 6e-25
23gb|AY087847.1| Arabidopsis thaliana clone 38927 mRNA, complete s... 123 6e-25
24emb|BX828527.1|CNS0A4CR Arabidopsis thaliana Full-length cDNA Co... 115 1e-22
25emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, ... 96 1e-16
26emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC... 96 1e-16
27emb|BX829322.1|CNS0A3GW Arabidopsis thaliana Full-length cDNA Co... 72 2e-09
28ref|NM_025550.2| Mus musculus proteasome (prosome, macropain) 26... 44 0.44
29gb|AC116479.14| Mus musculus, clone RP23-397F3, complete sequence 44 0.44
30dbj|AK010287.1| Mus musculus ES cells cDNA, RIKEN full-length en... 44 0.44
31dbj|AK002343.1| Mus musculus adult male kidney cDNA, RIKEN full-... 44 0.44
32gb|BC006869.1| Mus musculus proteasome (prosome, macropain) 26S ... 44 0.44
33gb|AC154515.2| Mus musculus BAC clone RP24-81I13 from chromosome... 44 0.44
34dbj|AK211149.1| Mus musculus cDNA, clone:Y2G0120M22, strand:plus... 44 0.44
35dbj|AK206699.1| Mus musculus cDNA, clone:Y2G0105K15, strand:plus... 44 0.44
36dbj|AK183447.1| Mus musculus cDNA, clone:Y0G0125O22, strand:minu... 44 0.44
37dbj|AK178742.1| Mus musculus cDNA, clone:Y0G0107M03, strand:plus... 44 0.44
38emb|AJ252147.1|MMU252147 Mus musculus mRNA for putative KIAA0107... 44 0.44
39gb|BC108599.1| Xenopus laevis cDNA clone MGC:131117 IMAGE:798324... 42 1.7
40gb|U50070.2| Caenorhabditis elegans cosmid F26D12, complete sequ... 42 1.7
41gb|AC117633.6| Mus musculus, clone RP23-200C8, complete sequence 42 1.7
42emb|AL596180.8| Mouse DNA sequence from clone RP23-243J8 on chro... 42 1.7
43emb|CR857902.1| Pongo pygmaeus mRNA; cDNA DKFZp469H2415 (from cl... 42 1.7
44ref|NM_002439.2| Homo sapiens mutS homolog 3 (E. coli) (MSH3), mRNA 42 1.7
45gb|AY275681.1| Homo sapiens mutS homolog 3 (E. coli) (MSH3) gene... 42 1.7
46dbj|AK033468.1| Mus musculus adult male colon cDNA, RIKEN full-l... 42 1.7
47dbj|D61419.2| Homo sapiens hMSH3 gene for hMSH3 protein, complet... 42 1.7
48gb|AC022493.12|AC022493 Homo sapiens 5 BAC RP11-241J12 (Roswell ... 42 1.7
49gb|AC110216.10| Mus musculus chromosome 18, clone RP24-502I6, co... 42 1.7
50gb|J04810.1|HUMDUG Human MSH3 gene, complete cds 42 1.7
51gb|U61981.1|HSU61981 Human putative mismatch repair/binding prot... 42 1.7
52gb|AC149391.2| Phakopsora pachyrhizi clone JGIAFNA-5B17, complet... 40 6.9
53gb|U42580.4|PBU42580 Paramecium bursaria Chlorella virus 1, comp... 40 6.9
54gb|BT014513.1| Lycopersicon esculentum clone 133900F, mRNA sequence 40 6.9
55gb|DP000008.1| Bos taurus target 1 genomic scaffold 40 6.9
56gb|AC024809.1| Caenorhabditis elegans cosmid Y53G8AR, complete s... 40 6.9
57gb|AC147055.2| Homo sapiens BAC clone RP11-1267H10 from 4, compl... 40 6.9
58gb|AC113244.19| Mus musculus chromosome 19, clone RP23-172E2, co... 40 6.9
59emb|BX548027.16| Zebrafish DNA sequence from clone DKEY-16F17 in... 40 6.9
60ref|XM_757387.1| Ustilago maydis 521 hypothetical protein (UM063... 40 6.9
61emb|CR710212.2|CNS0GAY8 Tetraodon nigroviridis full-length cDNA 40 6.9
62emb|AL136973.7| Human DNA sequence from clone RP3-414O8 on chrom... 40 6.9
63emb|AJ308233.1|TNI308233 Tetraodon nigroviridis aw502783-like ge... 40 6.9
64gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, co... 40 6.9
65emb|BX539340.7| Zebrafish DNA sequence from clone DKEY-57K2 in l... 40 6.9
66emb|BX005282.24| Zebrafish DNA sequence from clone DKEY-37M22 in... 40 6.9
67gb|AC074198.6| Homo sapiens BAC clone RP11-75A5 from 4, complete... 40 6.9
68gb|AF525215.1| Takifugu rubripes Mx (Mx) gene, complete cds 40 6.9
69gb|AC156365.3| Bos taurus clone RP42-18L9, complete sequence 40 6.9
70gb|AC134921.2| Homo sapiens BAC clone RP11-597F18 from 4, comple... 40 6.9
71gb|AC148053.3| Carollia perspicillata clone 594J14, complete seq... 40 6.9
72dbj|AP006147.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 6.9
73gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 40 6.9 
>dbj|AK071215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084I15, full
            insert sequence
          Length = 1371

 Score =  268 bits (135), Expect = 2e-68
 Identities = 210/235 (89%)
 Strand = Plus / Minus

                                                                        
Query: 276  tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 335
            |||| |||||||||||| ||||| ||||| ||||| ||||||| |||||| || ||||||
Sbjct: 1199 tacaagtcaatgactcgtgacagtttctggatgcggttcagcaagaagtccccttgcttg 1140

                                                                        
Query: 336  atggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccagca 395
            |||||||  ||||||||||||||||  || ||||||||||| |||||||| |||||||||
Sbjct: 1139 atggtcgcttggtagaaggcattcctagcgtcaggtcggtttgtctccagaacaccagca 1080

                                                                        
Query: 396  accttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcctggtct 455
            |||||||| |||||||||||||| |||||||| ||||| || ||||||||||||||||||
Sbjct: 1079 accttatcgatcttgcagtgaagcttcccagctgcaatgaaccgcgacaattcctggtct 1020

                                                                   
Query: 456  atgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacactct 510
            ||||||||||| |||||||||||||| || ||||| || ||||||||||||||||
Sbjct: 1019 atgaaatcaacagtcacaccaaatgctgcggccatcgcttccattgtcacactct 965
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>dbj|AK104327.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F11, full
            insert sequence
          Length = 1510

 Score =  256 bits (129), Expect = 6e-65
 Identities = 210/237 (88%)
 Strand = Plus / Minus

                                                                        
Query: 274  cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 333
            ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 1292 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 1233

                                                                        
Query: 334  tgatggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccag 393
            ||||||| | ||||||||| ||||| |  |||||||| ||||||||||||||||| | ||
Sbjct: 1232 tgatggttgcctggtagaaagcatttctggcatcaggccggttcgtctccaggacgcaag 1173

                                                                        
Query: 394  caaccttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcctggt 453
            |||||||||| ||||||||||| || || ||||||||||| ||||| ||||||||| |||
Sbjct: 1172 caaccttatcgatcttgcagtggagctttccagcagcaatgaagcgtgacaattccaggt 1113

                                                                     
Query: 454  ctatgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacactct 510
            ||||||||||||| |||||||||||||| | ||||||||| ||||| ||||||||||
Sbjct: 1112 ctatgaaatcaacggtcacaccaaatgcagaagccattgcttccatcgtcacactct 1056
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>dbj|AK068887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002M12, full
            insert sequence
          Length = 1515

 Score =  256 bits (129), Expect = 6e-65
 Identities = 210/237 (88%)
 Strand = Plus / Minus

                                                                        
Query: 274  cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 333
            ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 1297 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 1238

                                                                        
Query: 334  tgatggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccag 393
            ||||||| | ||||||||| ||||| |  |||||||| ||||||||||||||||| | ||
Sbjct: 1237 tgatggttgcctggtagaaagcatttctggcatcaggccggttcgtctccaggacgcaag 1178

                                                                        
Query: 394  caaccttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcctggt 453
            |||||||||| ||||||||||| || || ||||||||||| ||||| ||||||||| |||
Sbjct: 1177 caaccttatcgatcttgcagtggagctttccagcagcaatgaagcgtgacaattccaggt 1118

                                                                     
Query: 454  ctatgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacactct 510
            ||||||||||||| |||||||||||||| | ||||||||| ||||| ||||||||||
Sbjct: 1117 ctatgaaatcaacggtcacaccaaatgcagaagccattgcttccatcgtcacactct 1061
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>dbj|AB037149.1| Oryza sativa (japonica cultivar-group) OsRPN7 mRNA for 26S proteasome
            regulatory particle non-ATPase subunit7, complete cds
          Length = 1547

 Score =  256 bits (129), Expect = 6e-65
 Identities = 210/237 (88%)
 Strand = Plus / Minus

                                                                        
Query: 274  cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 333
            ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 1255 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 1196

                                                                        
Query: 334  tgatggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccag 393
            ||||||| | ||||||||| ||||| |  |||||||| ||||||||||||||||| | ||
Sbjct: 1195 tgatggttgcctggtagaaagcatttctggcatcaggccggttcgtctccaggacgcaag 1136

                                                                        
Query: 394  caaccttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcctggt 453
            |||||||||| ||||||||||| || || ||||||||||| ||||| ||||||||| |||
Sbjct: 1135 caaccttatcgatcttgcagtggagctttccagcagcaatgaagcgtgacaattccaggt 1076

                                                                     
Query: 454  ctatgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacactct 510
            ||||||||||||| |||||||||||||| | ||||||||| ||||| ||||||||||
Sbjct: 1075 ctatgaaatcaacggtcacaccaaatgcagaagccattgcttccatcgtcacactct 1019
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>ref|XM_472939.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1170

 Score =  254 bits (128), Expect = 2e-64
 Identities = 209/236 (88%)
 Strand = Plus / Minus

                                                                        
Query: 275  ctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgctt 334
            |||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||||
Sbjct: 1170 ctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgctt 1111

                                                                        
Query: 335  gatggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccagc 394
            |||||| | ||||||||| ||||| |  |||||||| ||||||||||||||||| | |||
Sbjct: 1110 gatggttgcctggtagaaagcatttctggcatcaggccggttcgtctccaggacgcaagc 1051

                                                                        
Query: 395  aaccttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcctggtc 454
            ||||||||| ||||||||||| || || ||||||||||| ||||| ||||||||| ||||
Sbjct: 1050 aaccttatcgatcttgcagtggagctttccagcagcaatgaagcgtgacaattccaggtc 991

                                                                    
Query: 455  tatgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacactct 510
            |||||||||||| |||||||||||||| | ||||||||| ||||| ||||||||||
Sbjct: 990  tatgaaatcaacggtcacaccaaatgcagaagccattgcttccatcgtcacactct 935
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>gb|AY107400.1| Zea mays PCO125916 mRNA sequence
          Length = 1443

 Score =  224 bits (113), Expect = 2e-55
 Identities = 206/237 (86%)
 Strand = Plus / Minus

                                                                        
Query: 274  cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 333
            |||||||||| || ||||| ||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 1215 cctacaggtcgataactcgtgacagcttctggatgcggttcagcaggaagtctccttgct 1156

                                                                        
Query: 334  tgatggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccag 393
            ||||||| | |||||||||||| ||||  ||||||||||||||||| |||| ||| ||||
Sbjct: 1155 tgatggttgcctggtagaaggcgttcctagcatcaggtcggttcgtttccaagacgccag 1096

                                                                        
Query: 394  caaccttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcctggt 453
            |||| || || ||||||||||| || |||||||| ||||| ||||| |||| ||||||||
Sbjct: 1095 caactttgtctatcttgcagtggagcttcccagcggcaatgaagcgtgacagttcctggt 1036

                                                                     
Query: 454  ctatgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacactct 510
            |||| || || ||||| || |||||||| |||||||| || ||||||||||||||||
Sbjct: 1035 ctataaagtcgactgtgacgccaaatgcagcagccatggcttccattgtcacactct 979
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>gb|BT016822.1| Zea mays clone Contig655 mRNA sequence
          Length = 1636

 Score =  220 bits (111), Expect = 3e-54
 Identities = 204/235 (86%)
 Strand = Plus / Minus

                                                                        
Query: 276  tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 335
            |||||||||||||| || || |||||||| ||||| ||||||| |||||| || ||||||
Sbjct: 1292 tacaggtcaatgacccgtgaaagcttctggatgcggttcagcaagaagtccccttgcttg 1233

                                                                        
Query: 336  atggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccagca 395
            ||||||| ||||||||| |||||||   ||||||||||||| |||||||| |||||||||
Sbjct: 1232 atggtcgcctggtagaaagcattcctctcatcaggtcggttagtctccagaacaccagca 1173

                                                                        
Query: 396  accttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcctggtct 455
            |||||||||||||||||||| || |||||||| ||||| || || |||| ||||||||| 
Sbjct: 1172 accttatcaatcttgcagtgcagcttcccagctgcaatgaaccgtgacagttcctggtca 1113

                                                                   
Query: 456  atgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacactct 510
            ||||||||||| || ||||| || || |  |||||||| ||||||||||||||||
Sbjct: 1112 atgaaatcaacagttacaccgaacgcagtggccattgcttccattgtcacactct 1058
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>gb|AY104803.1| Zea mays PCO064157 mRNA sequence
          Length = 1631

 Score =  220 bits (111), Expect = 3e-54
 Identities = 204/235 (86%)
 Strand = Plus / Minus

                                                                        
Query: 276  tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 335
            |||||||||||||| || || |||||||| ||||| ||||||| |||||| || ||||||
Sbjct: 1307 tacaggtcaatgacccgtgaaagcttctggatgcggttcagcaagaagtccccttgcttg 1248

                                                                        
Query: 336  atggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccagca 395
            ||||||| ||||||||| |||||||   ||||||||||||| |||||||| |||||||||
Sbjct: 1247 atggtcgcctggtagaaagcattcctctcatcaggtcggttagtctccagaacaccagca 1188

                                                                        
Query: 396  accttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcctggtct 455
            |||||||||||||||||||| || |||||||| ||||| || || |||| ||||||||| 
Sbjct: 1187 accttatcaatcttgcagtgcagcttcccagctgcaatgaaccgtgacagttcctggtca 1128

                                                                   
Query: 456  atgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacactct 510
            ||||||||||| || ||||| || || |  |||||||| ||||||||||||||||
Sbjct: 1127 atgaaatcaacagttacaccgaacgcagtggccattgcttccattgtcacactct 1073
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>emb|AL442114.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811E11, complete
             sequence
          Length = 59348

 Score =  190 bits (96), Expect = 3e-45
 Identities = 156/176 (88%)
 Strand = Plus / Minus

                                                                         
Query: 274   cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 333
             ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 13176 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 13117

                                                                         
Query: 334   tgatggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccag 393
             ||||||| | ||||||||| ||||| |  |||||||| ||||||||||||||||| ||||
Sbjct: 13116 tgatggttgcctggtagaaagcatttctggcatcaggccggttcgtctccaggacgccag 13057

                                                                     
Query: 394   caaccttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcc 449
             |||||||||| ||||||||||| || || ||||||||||| ||||| |||||||||
Sbjct: 13056 caaccttatcgatcttgcagtggagctttccagcagcaatgaagcgtgacaattcc 13001



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                         
Query: 451   ggtctatgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacactct 510
             |||||||||||||||| |||||||||||||| | ||||||||| ||||| ||||||||||
Sbjct: 12895 ggtctatgaaatcaacggtcacaccaaatgcagaagccattgcttccatcgtcacactct 12836
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  186 bits (94), Expect = 5e-44
 Identities = 154/174 (88%)
 Strand = Plus / Minus

                                                                            
Query: 276      tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 335
                |||| |||||||||||| ||||| ||||| ||||| ||||||| |||||| || ||||||
Sbjct: 23484974 tacaagtcaatgactcgtgacagtttctggatgcggttcagcaagaagtccccttgcttg 23484915

                                                                            
Query: 336      atggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccagca 395
                |||||||  ||||||||||||||||  || ||||||||||| |||||||| |||||||||
Sbjct: 23484914 atggtcgcttggtagaaggcattcctagcgtcaggtcggtttgtctccagaacaccagca 23484855

                                                                      
Query: 396      accttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcc 449
                |||||||| |||||||||||||| |||||||| ||||| || ||||||||||||
Sbjct: 23484854 accttatcgatcttgcagtgaagcttcccagctgcaatgaaccgcgacaattcc 23484801



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                            
Query: 449      ctggtctatgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacact 508
                |||||||||||||||||| |||||||||||||| || ||||| || ||||||||||||||
Sbjct: 23484687 ctggtctatgaaatcaacagtcacaccaaatgctgcggccatcgcttccattgtcacact 23484628

                  
Query: 509      ct 510
                ||
Sbjct: 23484627 ct 23484626
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>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1791_B03
          Length = 166214

 Score =  186 bits (94), Expect = 5e-44
 Identities = 154/174 (88%)
 Strand = Plus / Minus

                                                                         
Query: 276   tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 335
             |||| |||||||||||| ||||| ||||| ||||| ||||||| |||||| || ||||||
Sbjct: 50657 tacaagtcaatgactcgtgacagtttctggatgcggttcagcaagaagtccccttgcttg 50598

                                                                         
Query: 336   atggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccagca 395
             |||||||  ||||||||||||||||  || ||||||||||| |||||||| |||||||||
Sbjct: 50597 atggtcgcttggtagaaggcattcctagcgtcaggtcggtttgtctccagaacaccagca 50538

                                                                   
Query: 396   accttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcc 449
             |||||||| |||||||||||||| |||||||| ||||| || ||||||||||||
Sbjct: 50537 accttatcgatcttgcagtgaagcttcccagctgcaatgaaccgcgacaattcc 50484



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                         
Query: 449   ctggtctatgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacact 508
             |||||||||||||||||| |||||||||||||| || ||||| || ||||||||||||||
Sbjct: 50370 ctggtctatgaaatcaacagtcacaccaaatgctgcggccatcgcttccattgtcacact 50311

               
Query: 509   ct 510
             ||
Sbjct: 50310 ct 50309
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>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1653_F07, complete sequence
          Length = 110109

 Score =  186 bits (94), Expect = 5e-44
 Identities = 154/174 (88%)
 Strand = Plus / Minus

                                                                          
Query: 276    tacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttg 335
              |||| |||||||||||| ||||| ||||| ||||| ||||||| |||||| || ||||||
Sbjct: 103649 tacaagtcaatgactcgtgacagtttctggatgcggttcagcaagaagtccccttgcttg 103590

                                                                          
Query: 336    atggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccagca 395
              |||||||  ||||||||||||||||  || ||||||||||| |||||||| |||||||||
Sbjct: 103589 atggtcgcttggtagaaggcattcctagcgtcaggtcggtttgtctccagaacaccagca 103530

                                                                    
Query: 396    accttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcc 449
              |||||||| |||||||||||||| |||||||| ||||| || ||||||||||||
Sbjct: 103529 accttatcgatcttgcagtgaagcttcccagctgcaatgaaccgcgacaattcc 103476



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                          
Query: 449    ctggtctatgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacact 508
              |||||||||||||||||| |||||||||||||| || ||||| || ||||||||||||||
Sbjct: 103362 ctggtctatgaaatcaacagtcacaccaaatgctgcggccatcgcttccattgtcacact 103303

                
Query: 509    ct 510
              ||
Sbjct: 103302 ct 103301
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>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09,
             complete sequence
          Length = 120583

 Score =  182 bits (92), Expect = 7e-43
 Identities = 155/176 (88%)
 Strand = Plus / Minus

                                                                         
Query: 274   cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 333
             ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 41133 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 41074

                                                                         
Query: 334   tgatggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccag 393
             ||||||| | ||||||||| ||||| |  |||||||| ||||||||||||||||| | ||
Sbjct: 41073 tgatggttgcctggtagaaagcatttctggcatcaggccggttcgtctccaggacgcaag 41014

                                                                     
Query: 394   caaccttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcc 449
             |||||||||| ||||||||||| || || ||||||||||| ||||| |||||||||
Sbjct: 41013 caaccttatcgatcttgcagtggagctttccagcagcaatgaagcgtgacaattcc 40958



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                         
Query: 451   ggtctatgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacactct 510
             |||||||||||||||| |||||||||||||| | ||||||||| ||||| ||||||||||
Sbjct: 40852 ggtctatgaaatcaacggtcacaccaaatgcagaagccattgcttccatcgtcacactct 40793
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>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15,
              complete sequence
          Length = 150864

 Score =  182 bits (92), Expect = 7e-43
 Identities = 155/176 (88%)
 Strand = Plus / Minus

                                                                          
Query: 274    cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 333
              ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 107946 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 107887

                                                                          
Query: 334    tgatggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccag 393
              ||||||| | ||||||||| ||||| |  |||||||| ||||||||||||||||| | ||
Sbjct: 107886 tgatggttgcctggtagaaagcatttctggcatcaggccggttcgtctccaggacgcaag 107827

                                                                      
Query: 394    caaccttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcc 449
              |||||||||| ||||||||||| || || ||||||||||| ||||| |||||||||
Sbjct: 107826 caaccttatcgatcttgcagtggagctttccagcagcaatgaagcgtgacaattcc 107771



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                          
Query: 451    ggtctatgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacactct 510
              |||||||||||||||| |||||||||||||| | ||||||||| ||||| ||||||||||
Sbjct: 107665 ggtctatgaaatcaacggtcacaccaaatgcagaagccattgcttccatcgtcacactct 107606
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  182 bits (92), Expect = 7e-43
 Identities = 155/176 (88%)
 Strand = Plus / Minus

                                                                            
Query: 274      cctacaggtcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgct 333
                ||||||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||
Sbjct: 24218721 cctacaggtcaatgactcgtgatagcttctggatgcggttcagcaggaagtccccttgct 24218662

                                                                            
Query: 334      tgatggtcgactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccag 393
                ||||||| | ||||||||| ||||| |  |||||||| ||||||||||||||||| | ||
Sbjct: 24218661 tgatggttgcctggtagaaagcatttctggcatcaggccggttcgtctccaggacgcaag 24218602

                                                                        
Query: 394      caaccttatcaatcttgcagtgaagtttcccagcagcaataaagcgcgacaattcc 449
                |||||||||| ||||||||||| || || ||||||||||| ||||| |||||||||
Sbjct: 24218601 caaccttatcgatcttgcagtggagctttccagcagcaatgaagcgtgacaattcc 24218546



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                            
Query: 451      ggtctatgaaatcaactgtcacaccaaatgcggcagccattgcctccattgtcacactct 510
                |||||||||||||||| |||||||||||||| | ||||||||| ||||| ||||||||||
Sbjct: 24218440 ggtctatgaaatcaacggtcacaccaaatgcagaagccattgcttccatcgtcacactct 24218381
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>ref|NM_118615.2| Arabidopsis thaliana unknown protein AT4G24820 transcript variant
            AT4G24820.1 mRNA, complete cds
          Length = 1595

 Score =  123 bits (62), Expect = 6e-25
 Identities = 143/170 (84%)
 Strand = Plus / Minus

                                                                        
Query: 294  gacagcttctgtatgcgattcagcaggaagtctccctgcttgatggtcgactggtagaag 353
            ||||||||||| || || || |||| ||| || || |||||||| || | |||||| |  
Sbjct: 1268 gacagcttctggattcggtttagcaagaaatccccttgcttgattgttgcctggtaaagt 1209

                                                                        
Query: 354  gcattccgtgcatcaggtcggttcgtctccaggacaccagcaaccttatcaatcttgcag 413
            ||||||  ||||||||| ||||| |||||||  ||||| |||||||| || ||||| |||
Sbjct: 1208 gcattctttgcatcaggacggtttgtctccaaaacacctgcaaccttgtctatcttacag 1149

                                                              
Query: 414  tgaagtttcccagcagcaataaagcgcgacaattcctggtctatgaaatc 463
            ||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1148 tgaagcttcccagcagcaatgaagcgcgacaactcctggtctatgaaatc 1099
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>ref|NM_202882.1| Arabidopsis thaliana unknown protein AT4G24820 transcript variant
            AT4G24820.2 mRNA, complete cds
          Length = 1462

 Score =  123 bits (62), Expect = 6e-25
 Identities = 143/170 (84%)
 Strand = Plus / Minus

                                                                        
Query: 294  gacagcttctgtatgcgattcagcaggaagtctccctgcttgatggtcgactggtagaag 353
            ||||||||||| || || || |||| ||| || || |||||||| || | |||||| |  
Sbjct: 1268 gacagcttctggattcggtttagcaagaaatccccttgcttgattgttgcctggtaaagt 1209

                                                                        
Query: 354  gcattccgtgcatcaggtcggttcgtctccaggacaccagcaaccttatcaatcttgcag 413
            ||||||  ||||||||| ||||| |||||||  ||||| |||||||| || ||||| |||
Sbjct: 1208 gcattctttgcatcaggacggtttgtctccaaaacacctgcaaccttgtctatcttacag 1149

                                                              
Query: 414  tgaagtttcccagcagcaataaagcgcgacaattcctggtctatgaaatc 463
            ||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1148 tgaagcttcccagcagcaatgaagcgcgacaactcctggtctatgaaatc 1099
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>gb|AY230838.1| Arabidopsis thaliana 26S proteasome subunit RPN7 (RPN7) mRNA,
            complete cds
          Length = 1421

 Score =  123 bits (62), Expect = 6e-25
 Identities = 143/170 (84%)
 Strand = Plus / Minus

                                                                        
Query: 294  gacagcttctgtatgcgattcagcaggaagtctccctgcttgatggtcgactggtagaag 353
            ||||||||||| || || || |||| ||| || || |||||||| || | |||||| |  
Sbjct: 1178 gacagcttctggattcggtttagcaagaaatccccttgcttgattgttgcctggtaaagt 1119

                                                                        
Query: 354  gcattccgtgcatcaggtcggttcgtctccaggacaccagcaaccttatcaatcttgcag 413
            ||||||  ||||||||| ||||| |||||||  ||||| |||||||| || ||||| |||
Sbjct: 1118 gcattctttgcatcaggacggtttgtctccaaaacacctgcaaccttgtctatcttacag 1059

                                                              
Query: 414  tgaagtttcccagcagcaataaagcgcgacaattcctggtctatgaaatc 463
            ||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1058 tgaagcttcccagcagcaatgaagcgcgacaactcctggtctatgaaatc 1009
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>gb|BT011969.1| Arabidopsis thaliana At4g24820 mRNA sequence
          Length = 1161

 Score =  123 bits (62), Expect = 6e-25
 Identities = 143/170 (84%)
 Strand = Plus / Minus

                                                                        
Query: 294  gacagcttctgtatgcgattcagcaggaagtctccctgcttgatggtcgactggtagaag 353
            ||||||||||| || || || |||| ||| || || |||||||| || | |||||| |  
Sbjct: 1142 gacagcttctggattcggtttagcaagaaatccccttgcttgattgttgcctggtaaagt 1083

                                                                        
Query: 354  gcattccgtgcatcaggtcggttcgtctccaggacaccagcaaccttatcaatcttgcag 413
            ||||||  ||||||||| ||||| |||||||  ||||| |||||||| || ||||| |||
Sbjct: 1082 gcattctttgcatcaggacggtttgtctccaaaacacctgcaaccttgtctatcttacag 1023

                                                              
Query: 414  tgaagtttcccagcagcaataaagcgcgacaattcctggtctatgaaatc 463
            ||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1022 tgaagcttcccagcagcaatgaagcgcgacaactcctggtctatgaaatc 973
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>gb|BT000653.1| Arabidopsis thaliana clone RAFL05-08-I15 (R09884) putative proteasome
            regulatory subunit (At4g24820) mRNA, complete cds
          Length = 1443

 Score =  123 bits (62), Expect = 6e-25
 Identities = 143/170 (84%)
 Strand = Plus / Minus

                                                                        
Query: 294  gacagcttctgtatgcgattcagcaggaagtctccctgcttgatggtcgactggtagaag 353
            ||||||||||| || || || |||| ||| || || |||||||| || | |||||| |  
Sbjct: 1195 gacagcttctggattcggtttagcaagaaatccccttgcttgattgttgcctggtaaagt 1136

                                                                        
Query: 354  gcattccgtgcatcaggtcggttcgtctccaggacaccagcaaccttatcaatcttgcag 413
            ||||||  ||||||||| ||||| |||||||  ||||| |||||||| || ||||| |||
Sbjct: 1135 gcattctttgcatcaggacggtttgtctccaaaacacctgcaaccttgtctatcttacag 1076

                                                              
Query: 414  tgaagtttcccagcagcaataaagcgcgacaattcctggtctatgaaatc 463
            ||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1075 tgaagcttcccagcagcaatgaagcgcgacaactcctggtctatgaaatc 1026
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>gb|AY093269.1| Arabidopsis thaliana putative proteasome regulatory subunit
            (At4g24820) mRNA, complete cds
          Length = 1446

 Score =  123 bits (62), Expect = 6e-25
 Identities = 143/170 (84%)
 Strand = Plus / Minus

                                                                        
Query: 294  gacagcttctgtatgcgattcagcaggaagtctccctgcttgatggtcgactggtagaag 353
            ||||||||||| || || || |||| ||| || || |||||||| || | |||||| |  
Sbjct: 1145 gacagcttctggattcggtttagcaagaaatccccttgcttgattgttgcctggtaaagt 1086

                                                                        
Query: 354  gcattccgtgcatcaggtcggttcgtctccaggacaccagcaaccttatcaatcttgcag 413
            ||||||  ||||||||| ||||| |||||||  ||||| |||||||| || ||||| |||
Sbjct: 1085 gcattctttgcatcaggacggtttgtctccaaaacacctgcaaccttgtctatcttacag 1026

                                                              
Query: 414  tgaagtttcccagcagcaataaagcgcgacaattcctggtctatgaaatc 463
            ||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1025 tgaagcttcccagcagcaatgaagcgcgacaactcctggtctatgaaatc 976
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>gb|AY054500.1| Arabidopsis thaliana putative proteasome regulatory subunit
            (At4g24820; F6I7.30) mRNA, complete cds
          Length = 1595

 Score =  123 bits (62), Expect = 6e-25
 Identities = 143/170 (84%)
 Strand = Plus / Minus

                                                                        
Query: 294  gacagcttctgtatgcgattcagcaggaagtctccctgcttgatggtcgactggtagaag 353
            ||||||||||| || || || |||| ||| || || |||||||| || | |||||| |  
Sbjct: 1268 gacagcttctggattcggtttagcaagaaatccccttgcttgattgttgcctggtaaagt 1209

                                                                        
Query: 354  gcattccgtgcatcaggtcggttcgtctccaggacaccagcaaccttatcaatcttgcag 413
            ||||||  ||||||||| ||||| |||||||  ||||| |||||||| || ||||| |||
Sbjct: 1208 gcattctttgcatcaggacggtttgtctccaaaacacctgcaaccttgtctatcttacag 1149

                                                              
Query: 414  tgaagtttcccagcagcaataaagcgcgacaattcctggtctatgaaatc 463
            ||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1148 tgaagcttcccagcagcaatgaagcgcgacaactcctggtctatgaaatc 1099
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>gb|AY087847.1| Arabidopsis thaliana clone 38927 mRNA, complete sequence
          Length = 1482

 Score =  123 bits (62), Expect = 6e-25
 Identities = 143/170 (84%)
 Strand = Plus / Minus

                                                                        
Query: 294  gacagcttctgtatgcgattcagcaggaagtctccctgcttgatggtcgactggtagaag 353
            ||||||||||| || || || |||| ||| || || |||||||| || | |||||| |  
Sbjct: 1248 gacagcttctggattcggtttagcaagaaatccccttgcttgattgttgcctggtaaagt 1189

                                                                        
Query: 354  gcattccgtgcatcaggtcggttcgtctccaggacaccagcaaccttatcaatcttgcag 413
            ||||||  ||||||||| ||||| |||||||  ||||| |||||||| || ||||| |||
Sbjct: 1188 gcattctttgcatcaggacggtttgtctccaaaacacctgcaaccttgtctatcttacag 1129

                                                              
Query: 414  tgaagtttcccagcagcaataaagcgcgacaattcctggtctatgaaatc 463
            ||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1128 tgaagcttcccagcagcaatgaagcgcgacaactcctggtctatgaaatc 1079
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>emb|BX828527.1|CNS0A4CR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL13ZB05 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1332

 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                        
Query: 362  tgcatcaggtcggttcgtctccaggacaccagcaaccttatcaatcttgcagtgaagttt 421
            ||||||||| ||||| |||||||  ||||| |||||||| || ||||| |||||||| ||
Sbjct: 1098 tgcatcaggacggtttgtctccaaaacacctgcaaccttgtctatcttacagtgaagctt 1039

                                                      
Query: 422  cccagcagcaataaagcgcgacaattcctggtctatgaaatc 463
            |||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1038 cccagcagcaatgaagcgcgacaactcctggtctatgaaatc 997
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>emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 62
          Length = 197070

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 126/152 (82%)
 Strand = Plus / Plus

                                                                         
Query: 294   gacagcttctgtatgcgattcagcaggaagtctccctgcttgatggtcgactggtagaag 353
             ||||||||||| || || || |||| ||| || || |||||||| || | |||||| |  
Sbjct: 64796 gacagcttctggattcggtttagcaagaaatccccttgcttgattgttgcctggtaaagt 64855

                                                                         
Query: 354   gcattccgtgcatcaggtcggttcgtctccaggacaccagcaaccttatcaatcttgcag 413
             ||||||  ||||||||| ||||| |||||||  ||||| |||||||| || ||||| |||
Sbjct: 64856 gcattctttgcatcaggacggtttgtctccaaaacacctgcaaccttgtctatcttacag 64915

                                             
Query: 414   tgaagtttcccagcagcaataaagcgcgacaa 445
             ||||| |||||||||||||| |||||||||||
Sbjct: 64916 tgaagcttcccagcagcaatgaagcgcgacaa 64947
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>emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC clone  F6I7 (ESSA project)
          Length = 95185

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 126/152 (82%)
 Strand = Plus / Plus

                                                                         
Query: 294   gacagcttctgtatgcgattcagcaggaagtctccctgcttgatggtcgactggtagaag 353
             ||||||||||| || || || |||| ||| || || |||||||| || | |||||| |  
Sbjct: 35372 gacagcttctggattcggtttagcaagaaatccccttgcttgattgttgcctggtaaagt 35431

                                                                         
Query: 354   gcattccgtgcatcaggtcggttcgtctccaggacaccagcaaccttatcaatcttgcag 413
             ||||||  ||||||||| ||||| |||||||  ||||| |||||||| || ||||| |||
Sbjct: 35432 gcattctttgcatcaggacggtttgtctccaaaacacctgcaaccttgtctatcttacag 35491

                                             
Query: 414   tgaagtttcccagcagcaataaagcgcgacaa 445
             ||||| |||||||||||||| |||||||||||
Sbjct: 35492 tgaagcttcccagcagcaatgaagcgcgacaa 35523
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>emb|BX829322.1|CNS0A3GW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL91ZF12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 487

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                       
Query: 362 tgcatcaggtcggttcgtctccaggacaccagcaaccttatcaatcttgcagtgaagttt 421
           ||||||||| ||||| |||||||  | ||| |||||||| |  || || |||||||| ||
Sbjct: 88  tgcatcaggacggtttgtctccaaaaaacctgcaaccttgtttattttacagtgaagctt 29

                                   
Query: 422 cccagcagcaataaagcgcgacaa 445
           ||||||||||||||||||||||||
Sbjct: 28  cccagcagcaataaagcgcgacaa 5
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>ref|NM_025550.2| Mus musculus proteasome (prosome, macropain) 26S subunit, non-ATPase,
            6 (Psmd6), mRNA
          Length = 1313

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 399  ttatcaatcttgcagtgaagtttcccagcagcaataaa 436
            |||||||| |||||||| ||| | ||||||||||||||
Sbjct: 1067 ttatcaattttgcagtggagtcttccagcagcaataaa 1030
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>gb|AC116479.14| Mus musculus, clone RP23-397F3, complete sequence
          Length = 225423

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 399   ttatcaatcttgcagtgaagtttcccagcagcaataaa 436
             |||||||| |||||||| ||| | ||||||||||||||
Sbjct: 10440 ttatcaattttgcagtggagtcttccagcagcaataaa 10403
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>dbj|AK010287.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
            clone:2400006A19 product:PROTEASOME REGULATORY PARTICLE
            SUBUNIT P44S10 homolog [Homo sapiens], full insert
            sequence
          Length = 1329

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 399  ttatcaatcttgcagtgaagtttcccagcagcaataaa 436
            |||||||| |||||||| ||| | ||||||||||||||
Sbjct: 1100 ttatcaattttgcagtggagtcttccagcagcaataaa 1063
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>dbj|AK002343.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:0610008K13 product:PROTEASOME REGULATORY
            PARTICLE SUBUNIT P44S10 homolog [Homo sapiens], full
            insert sequence
          Length = 1331

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 399  ttatcaatcttgcagtgaagtttcccagcagcaataaa 436
            |||||||| |||||||| ||| | ||||||||||||||
Sbjct: 1103 ttatcaattttgcagtggagtcttccagcagcaataaa 1066
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>gb|BC006869.1| Mus musculus proteasome (prosome, macropain) 26S subunit, non-ATPase,
            6, mRNA (cDNA clone MGC:6476 IMAGE:2646325), complete cds
          Length = 1313

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 399  ttatcaatcttgcagtgaagtttcccagcagcaataaa 436
            |||||||| |||||||| ||| | ||||||||||||||
Sbjct: 1067 ttatcaattttgcagtggagtcttccagcagcaataaa 1030
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>gb|AC154515.2| Mus musculus BAC clone RP24-81I13 from chromosome 14, complete sequence
          Length = 172475

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 399    ttatcaatcttgcagtgaagtttcccagcagcaataaa 436
              |||||||| |||||||| ||| | ||||||||||||||
Sbjct: 143693 ttatcaattttgcagtggagtcttccagcagcaataaa 143656
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>dbj|AK211149.1| Mus musculus cDNA, clone:Y2G0120M22, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000022256, based on BLAT search
          Length = 381

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 399 ttatcaatcttgcagtgaagtttcccagcagcaataaa 436
           |||||||| |||||||| ||| | ||||||||||||||
Sbjct: 345 ttatcaattttgcagtggagtcttccagcagcaataaa 308
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>dbj|AK206699.1| Mus musculus cDNA, clone:Y2G0105K15, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000022256, based on BLAT search
          Length = 326

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 399 ttatcaatcttgcagtgaagtttcccagcagcaataaa 436
           |||||||| |||||||| ||| | ||||||||||||||
Sbjct: 187 ttatcaattttgcagtggagtcttccagcagcaataaa 150
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>dbj|AK183447.1| Mus musculus cDNA, clone:Y0G0125O22, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000022256, based on BLAT search
          Length = 418

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 399 ttatcaatcttgcagtgaagtttcccagcagcaataaa 436
           |||||||| |||||||| ||| | ||||||||||||||
Sbjct: 279 ttatcaattttgcagtggagtcttccagcagcaataaa 242
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>dbj|AK178742.1| Mus musculus cDNA, clone:Y0G0107M03, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000022256, based on BLAT search
          Length = 432

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 399 ttatcaatcttgcagtgaagtttcccagcagcaataaa 436
           |||||||| |||||||| ||| | ||||||||||||||
Sbjct: 346 ttatcaattttgcagtggagtcttccagcagcaataaa 309
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>emb|AJ252147.1|MMU252147 Mus musculus mRNA for putative KIAA0107 homologue (KIAA0107 gene)
          Length = 1335

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 399  ttatcaatcttgcagtgaagtttcccagcagcaataaa 436
            |||||||| |||||||| ||| | ||||||||||||||
Sbjct: 1103 ttatcaattttgcagtggagtcttccagcagcaataaa 1066
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>gb|BC108599.1| Xenopus laevis cDNA clone MGC:131117 IMAGE:7983247, complete cds
          Length = 1368

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 300  ttctgtatgcgattcagcaggaagtctccctgcttgatggt 340
            ||||| ||||| || ||||| | ||||||||||||||||||
Sbjct: 1225 ttctggatgcggttgagcagcaggtctccctgcttgatggt 1185
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>gb|U50070.2| Caenorhabditis elegans cosmid F26D12, complete sequence
          Length = 33938

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    aaattgtaataaaaaatggat 30
             |||||||||||||||||||||
Sbjct: 28403 aaattgtaataaaaaatggat 28423
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>gb|AC117633.6| Mus musculus, clone RP23-200C8, complete sequence
          Length = 224221

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 12     attgtaataaaaaatggatga 32
              |||||||||||||||||||||
Sbjct: 175499 attgtaataaaaaatggatga 175479
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>emb|AL596180.8| Mouse DNA sequence from clone RP23-243J8 on chromosome 11 Contains the
             Akap1 gene for A kinase (PRKA) anchor protein 1, complete
             sequence
          Length = 76410

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 239   gtgccaaggagctgctccaaa 259
             |||||||||||||||||||||
Sbjct: 17559 gtgccaaggagctgctccaaa 17539
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>emb|CR857902.1| Pongo pygmaeus mRNA; cDNA DKFZp469H2415 (from clone DKFZp469H2415)
          Length = 4438

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 9    aaaattgtaataaaaaatgga 29
            |||||||||||||||||||||
Sbjct: 2621 aaaattgtaataaaaaatgga 2641
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>ref|NM_002439.2| Homo sapiens mutS homolog 3 (E. coli) (MSH3), mRNA
          Length = 4645

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 9    aaaattgtaataaaaaatgga 29
            |||||||||||||||||||||
Sbjct: 2819 aaaattgtaataaaaaatgga 2839
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>gb|AY275681.1| Homo sapiens mutS homolog 3 (E. coli) (MSH3) gene, complete cds
          Length = 223885

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      aaaattgtaataaaaaatgga 29
              |||||||||||||||||||||
Sbjct: 138683 aaaattgtaataaaaaatgga 138703
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>dbj|AK033468.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030214A21 product:unclassifiable, full
           insert sequence
          Length = 1684

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 239 gtgccaaggagctgctccaaa 259
           |||||||||||||||||||||
Sbjct: 636 gtgccaaggagctgctccaaa 616
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>dbj|D61419.2| Homo sapiens hMSH3 gene for hMSH3 protein, complete cds
          Length = 12089

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 9    aaaattgtaataaaaaatgga 29
            |||||||||||||||||||||
Sbjct: 8243 aaaattgtaataaaaaatgga 8263
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>gb|AC022493.12|AC022493 Homo sapiens 5 BAC RP11-241J12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 153078

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     aaaattgtaataaaaaatgga 29
             |||||||||||||||||||||
Sbjct: 91886 aaaattgtaataaaaaatgga 91866
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>gb|AC110216.10| Mus musculus chromosome 18, clone RP24-502I6, complete sequence
          Length = 201138

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    attgtaataaaaaatggatga 32
             |||||||||||||||||||||
Sbjct: 84533 attgtaataaaaaatggatga 84513
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>gb|J04810.1|HUMDUG Human MSH3 gene, complete cds
          Length = 3528

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 9    aaaattgtaataaaaaatgga 29
            |||||||||||||||||||||
Sbjct: 2627 aaaattgtaataaaaaatgga 2647
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>gb|U61981.1|HSU61981 Human putative mismatch repair/binding protein hMSH3 (hMSH3) mRNA,
            complete cds
          Length = 4374

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 9    aaaattgtaataaaaaatgga 29
            |||||||||||||||||||||
Sbjct: 2555 aaaattgtaataaaaaatgga 2575
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>gb|AC149391.2| Phakopsora pachyrhizi clone JGIAFNA-5B17, complete sequence
          Length = 42251

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 8     caaaattgtaataaaaaatggatg 31
             ||||| ||||||||||||||||||
Sbjct: 35473 caaaaatgtaataaaaaatggatg 35450
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>gb|U42580.4|PBU42580 Paramecium bursaria Chlorella virus 1, complete genome
          Length = 330743

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    tgaaatcaactgtcacacca 476
              ||||||||||||||||||||
Sbjct: 316702 tgaaatcaactgtcacacca 316683
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>gb|BT014513.1| Lycopersicon esculentum clone 133900F, mRNA sequence
          Length = 1278

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 119/152 (78%)
 Strand = Plus / Minus

                                                                        
Query: 282  tcaatgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttgatggtc 341
            |||||||| || || ||||| || |||||||||| || |||||| || |||||||| || 
Sbjct: 1114 tcaatgacacgagaaagcttttgaatgcgattcaacaagaagtccccttgcttgatagtt 1055

                                                                        
Query: 342  gactggtagaaggcattccgtgcatcaggtcggttcgtctccaggacaccagcaacctta 401
            | ||| || |  ||||||  ||||||||| || || || ||||  || || || || |||
Sbjct: 1054 gcctgataaagagcattctttgcatcaggacgattagtttccaatactcctgctacttta 995

                                            
Query: 402  tcaatcttgcagtgaagtttcccagcagcaat 433
            ||||||||||| || |  |||||||| |||||
Sbjct: 994  tcaatcttgcaatgcaacttcccagctgcaat 963
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>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    caattcctggtctatgaaat 462
              ||||||||||||||||||||
Sbjct: 198128 caattcctggtctatgaaat 198109
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>gb|AC024809.1| Caenorhabditis elegans cosmid Y53G8AR, complete sequence
          Length = 57747

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     acaaaattgtaataaaaaat 26
             ||||||||||||||||||||
Sbjct: 23145 acaaaattgtaataaaaaat 23126
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>gb|AC147055.2| Homo sapiens BAC clone RP11-1267H10 from 4, complete sequence
          Length = 184963

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    ctggtcacaaaattgtaata 20
            ||||||||||||||||||||
Sbjct: 8487 ctggtcacaaaattgtaata 8506
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>gb|AC113244.19| Mus musculus chromosome 19, clone RP23-172E2, complete sequence
          Length = 224351

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   cttgtaagggaagcttgggt 227
             ||||||||||||||||||||
Sbjct: 64959 cttgtaagggaagcttgggt 64940
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>emb|BX548027.16| Zebrafish DNA sequence from clone DKEY-16F17 in linkage group 12,
            complete sequence
          Length = 34289

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    acaaaattgtaataaaaaat 26
            ||||||||||||||||||||
Sbjct: 3468 acaaaattgtaataaaaaat 3449
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>ref|XM_757387.1| Ustilago maydis 521 hypothetical protein (UM06333.1) partial mRNA
          Length = 5268

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 149  gatcgatttgaaacgcaaagtgca 172
            |||||||||||| |||||||||||
Sbjct: 1884 gatcgatttgaagcgcaaagtgca 1861
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>emb|CR710212.2|CNS0GAY8 Tetraodon nigroviridis full-length cDNA
          Length = 503

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   acaaaattgtaataaaaaat 26
           ||||||||||||||||||||
Sbjct: 465 acaaaattgtaataaaaaat 484
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>emb|AL136973.7| Human DNA sequence from clone RP3-414O8 on chromosome 6, complete
            sequence
          Length = 62443

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 101  aagtcaaatcctcagatttt 120
            ||||||||||||||||||||
Sbjct: 4255 aagtcaaatcctcagatttt 4274
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>emb|AJ308233.1|TNI308233 Tetraodon nigroviridis aw502783-like gene (partial), af290615-like
             gene, ak000823-like gene, vav-3 gene, amylase-1 gene,
             amylase-2 gene and amylase-3 gene
          Length = 148106

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     acaaaattgtaataaaaaat 26
             ||||||||||||||||||||
Sbjct: 91326 acaaaattgtaataaaaaat 91345
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>gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, complete sequence
          Length = 203330

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   aggaaccaaagcaaagtctt 210
             ||||||||||||||||||||
Sbjct: 68660 aggaaccaaagcaaagtctt 68679
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>emb|BX539340.7| Zebrafish DNA sequence from clone DKEY-57K2 in linkage group 2, complete
              sequence
          Length = 234470

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tcacaaaattgtaataaaaa 24
              ||||||||||||||||||||
Sbjct: 213762 tcacaaaattgtaataaaaa 213743
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>emb|BX005282.24| Zebrafish DNA sequence from clone DKEY-37M22 in linkage group 11,
              complete sequence
          Length = 153270

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tcacaaaattgtaataaaaa 24
              ||||||||||||||||||||
Sbjct: 132649 tcacaaaattgtaataaaaa 132630
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>gb|AC074198.6| Homo sapiens BAC clone RP11-75A5 from 4, complete sequence
          Length = 182178

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    aaccaaagcaaagtcttgta 213
              ||||||||||||||||||||
Sbjct: 114285 aaccaaagcaaagtcttgta 114266
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>gb|AF525215.1| Takifugu rubripes Mx (Mx) gene, complete cds
          Length = 80367

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 285   atgactcgcgacagcttctgtatgcgattcagcaggaagtctccctgcttgatggt 340
             ||||||| |||||||||||| |  |  |||||||| ||||| |||| |||||||||
Sbjct: 62436 atgactctcgacagcttctggactctgttcagcagcaagtcgcccttcttgatggt 62491
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>gb|AC156365.3| Bos taurus clone RP42-18L9, complete sequence
          Length = 153415

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   caattcctggtctatgaaat 462
             ||||||||||||||||||||
Sbjct: 77637 caattcctggtctatgaaat 77618
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>gb|AC134921.2| Homo sapiens BAC clone RP11-597F18 from 4, complete sequence
          Length = 96776

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ctggtcacaaaattgtaata 20
             ||||||||||||||||||||
Sbjct: 16489 ctggtcacaaaattgtaata 16508
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>gb|AC148053.3| Carollia perspicillata clone 594J14, complete sequence
          Length = 125844

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   ttgggtagggtagggttgtg 241
             ||||||||||||||||||||
Sbjct: 59904 ttgggtagggtagggttgtg 59923
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>dbj|AP006147.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT36E18, TM0288,
             complete sequence
          Length = 112234

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   tcacaccaaatgcggcagcc 488
             ||||||||||||||||||||
Sbjct: 99930 tcacaccaaatgcggcagcc 99911
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>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     ttgggtagggtagggttgtg 241
               ||||||||||||||||||||
Sbjct: 1112122 ttgggtagggtagggttgtg 1112141


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,369,932
Number of Sequences: 3902068
Number of extensions: 4369932
Number of successful extensions: 111334
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 111161
Number of HSP's gapped (non-prelim): 175
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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